Wall clock time and date at job start Mon Mar 30 2020 05:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34221 * 116.99958 * 2 1 4 4 O 1.20827 * 120.00210 * 359.97438 * 3 2 1 5 5 C 1.50708 * 120.00229 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.41174 * 2.39269 * 5 3 2 7 7 C 1.50348 * 110.36583 * 240.09106 * 5 3 2 8 8 H 1.08994 * 109.68809 * 322.08248 * 7 5 3 9 9 C 1.51004 * 125.52372 * 96.73389 * 7 5 3 10 10 C 1.56402 * 101.60241 * 156.09689 * 9 7 5 11 11 C 1.55939 * 105.79430 * 334.99312 * 10 9 7 12 12 C 1.50322 * 104.16202 * 352.48014 * 11 10 9 13 13 H 1.09000 * 110.00227 * 279.46123 * 12 11 10 14 14 C 1.50931 * 125.65515 * 145.16130 * 12 11 10 15 15 N 1.49626 * 110.36581 * 124.68565 * 5 3 2 16 16 C 1.46902 * 111.00050 * 4.18028 * 15 5 3 17 17 C 1.53002 * 109.46969 * 177.69980 * 16 15 5 18 18 C 1.50699 * 109.47249 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99864 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00029 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00024 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00072 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47113 * 89.99560 * 22 20 18 24 24 H 1.48497 * 109.47437 * 209.99738 * 22 20 18 25 25 H 1.48501 * 109.47050 * 329.99728 * 22 20 18 26 26 H 1.09001 * 109.46732 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46542 * 299.99933 * 1 2 3 28 28 H 1.08997 * 109.46975 * 60.00287 * 1 2 3 29 29 H 1.08997 * 110.99800 * 274.17513 * 9 7 5 30 30 H 1.08994 * 111.00547 * 38.01886 * 9 7 5 31 31 H 1.09001 * 110.17972 * 94.07118 * 10 9 7 32 32 H 1.08988 * 110.18455 * 215.90939 * 10 9 7 33 33 H 1.08995 * 110.49305 * 233.81305 * 11 10 9 34 34 H 1.09002 * 110.49432 * 111.14974 * 11 10 9 35 35 H 1.08998 * 110.84996 * 322.22997 * 14 12 11 36 36 H 1.08997 * 110.85018 * 85.86697 * 14 12 11 37 37 H 1.08998 * 109.47394 * 297.70018 * 16 15 5 38 38 H 1.09001 * 109.47239 * 57.70194 * 16 15 5 39 39 H 1.08998 * 109.47093 * 300.00223 * 17 16 15 40 40 H 1.09001 * 109.46965 * 60.00046 * 17 16 15 41 41 H 0.97001 * 120.00727 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9996 0.2755 -0.0417 7 6 4.0516 2.0044 1.2224 8 1 3.3763 2.8290 1.4501 9 6 4.5262 1.3558 2.5008 10 6 5.4458 2.4716 3.0971 11 6 5.9203 3.3251 1.8814 12 6 5.4254 2.5649 0.6827 13 1 6.1013 1.7395 0.4595 14 6 4.9350 3.1775 -0.6066 15 7 4.0451 2.0991 -1.1528 16 6 2.9146 2.6744 -1.8938 17 6 3.4433 3.5547 -3.0280 18 6 2.2837 4.1445 -3.7885 19 1 1.2708 3.9148 -3.4922 20 6 2.5157 4.9781 -4.8619 21 7 1.5037 5.4924 -5.5259 22 14 4.2675 5.3760 -5.3740 23 1 4.7319 4.3756 -6.3683 24 1 4.3109 6.7317 -5.9784 25 1 5.1526 5.3369 -4.1821 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.6887 1.1434 3.1653 30 1 5.0961 0.4506 2.2915 31 1 4.8815 3.0911 3.7942 32 1 6.3029 2.0238 3.5997 33 1 7.0079 3.3957 1.8660 34 1 5.4729 4.3186 1.9146 35 1 4.3674 4.0876 -0.4125 36 1 5.7664 3.3742 -1.2835 37 1 2.3067 1.8713 -2.3103 38 1 2.3070 3.2774 -1.2189 39 1 4.0513 4.3578 -2.6114 40 1 4.0509 2.9517 -3.7028 41 1 1.6669 6.0786 -6.2814 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191197275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:28 Heat of formation + Delta-G solvation = -89.019759 kcal Electronic energy + Delta-G solvation = -21563.430720 eV Core-core repulsion = 18442.866853 eV Total energy + Delta-G solvation = -3120.563866 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.54228 -40.61027 -37.89641 -36.93879 -35.13194 -32.94116 -31.78848 -29.52183 -29.05574 -27.41312 -25.99179 -24.00538 -22.66695 -21.61380 -21.19492 -20.59168 -19.02877 -18.76695 -17.73123 -17.56101 -16.70409 -16.44216 -16.10697 -15.85792 -15.31430 -15.11891 -14.87047 -14.65911 -14.35097 -14.08001 -13.66765 -13.30124 -13.13194 -12.99213 -12.80961 -12.76532 -12.21932 -12.12732 -12.03422 -11.94153 -11.76826 -11.73320 -11.71130 -11.57350 -11.34496 -11.23504 -11.01450 -10.80710 -9.47324 -8.34349 -6.40266 0.96663 1.33287 1.35979 1.48568 1.64092 2.33224 2.74878 2.88573 3.00403 3.59509 3.71674 3.86467 4.00567 4.15313 4.19860 4.22931 4.24267 4.35577 4.38648 4.47412 4.57772 4.60995 4.66893 4.70270 4.75733 4.82932 4.89800 4.97995 5.08060 5.14163 5.19722 5.24125 5.30331 5.35822 5.43174 5.52504 5.53740 5.66960 5.84592 6.22131 6.61208 6.66034 7.24063 8.83034 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.006487 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.431250 B = 4315.590422 C = 5610.885847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.448 3.552 4 O -0.530 6.530 5 C 0.092 3.908 6 H 0.140 0.860 7 C -0.125 4.125 8 H 0.056 0.944 9 C -0.097 4.097 10 C -0.114 4.114 11 C -0.105 4.105 12 C -0.099 4.099 13 H 0.104 0.896 14 C 0.048 3.952 15 N -0.502 5.502 16 C 0.059 3.941 17 C 0.004 3.996 18 C -0.538 4.538 19 H 0.020 0.980 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.958 3.042 23 H -0.263 1.263 24 H -0.280 1.280 25 H -0.244 1.244 26 H 0.140 0.860 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.045 0.955 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.257 -11.552 18.875 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.291 3.709 4 O -0.419 6.419 5 C -0.016 4.016 6 H 0.158 0.842 7 C -0.145 4.145 8 H 0.075 0.925 9 C -0.135 4.135 10 C -0.151 4.151 11 C -0.143 4.143 12 C -0.118 4.118 13 H 0.122 0.878 14 C -0.079 4.079 15 N -0.228 5.228 16 C -0.069 4.069 17 C -0.034 4.034 18 C -0.576 4.576 19 H 0.038 0.962 20 C -0.191 4.191 21 N -0.591 5.591 22 Si 0.780 3.220 23 H -0.188 1.188 24 H -0.205 1.205 25 H -0.167 1.167 26 H 0.158 0.842 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.220 -11.489 18.369 23.956 hybrid contribution -1.248 1.198 -0.496 1.799 sum 8.972 -10.291 17.873 22.491 Atomic orbital electron populations 1.23530 0.75161 1.05856 1.01980 1.86493 1.24739 1.32604 1.83542 1.24605 0.93142 0.81345 0.71781 1.90662 1.68209 1.37207 1.45835 1.21806 0.84687 1.02190 0.92936 0.84206 1.22438 0.98075 0.99053 0.94933 0.92518 1.21837 0.99528 0.99016 0.93136 1.22922 0.99481 0.95969 0.96771 1.21541 1.01875 0.98300 0.92617 1.22159 0.95885 1.00439 0.93301 0.87810 1.22519 0.96260 0.92452 0.96677 1.65877 1.16480 1.21816 1.18655 1.22435 0.91939 0.96857 0.95630 1.19423 0.95477 0.94723 0.93790 1.21331 0.92961 1.29063 1.14239 0.96178 1.26053 1.02558 0.94839 0.95625 1.70074 1.33654 1.33833 1.21556 0.85552 0.79038 0.77828 0.79603 1.18793 1.20538 1.16740 0.84190 0.91628 0.93661 0.91226 0.88758 0.91570 0.89038 0.89196 0.92528 0.94620 0.88849 0.94087 0.93675 0.95709 0.95807 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.56 113.37 1.20 1.87 16 2 O -0.36 -10.57 10.57 -51.33 -0.54 -11.11 16 3 C 0.45 15.38 5.54 71.24 0.39 15.77 16 4 O -0.53 -22.36 13.14 21.96 0.29 -22.08 16 5 C 0.09 2.68 3.70 42.78 0.16 2.83 16 6 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 7 C -0.13 -3.02 2.18 -10.57 -0.02 -3.04 16 8 H 0.06 1.71 7.62 -2.39 -0.02 1.69 16 9 C -0.10 -1.55 6.72 31.13 0.21 -1.34 16 10 C -0.11 -1.56 6.95 32.80 0.23 -1.33 16 11 C -0.11 -1.78 6.69 30.75 0.21 -1.58 16 12 C -0.10 -2.17 2.81 -10.60 -0.03 -2.20 16 13 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 14 C 0.05 1.48 5.18 85.00 0.44 1.92 16 15 N -0.50 -17.88 5.37 -868.27 -4.67 -22.54 16 16 C 0.06 2.73 3.50 86.30 0.30 3.03 16 17 C 0.00 0.18 3.91 29.85 0.12 0.30 16 18 C -0.54 -33.62 9.66 25.60 0.25 -33.38 16 19 H 0.02 1.40 7.99 -2.91 -0.02 1.38 16 20 C 0.01 0.37 5.47 84.66 0.46 0.84 16 21 N -0.95 -62.24 13.96 21.45 0.30 -61.94 16 22 Si 0.96 45.95 27.47 68.60 1.88 47.83 16 23 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.24 -10.80 6.54 99.48 0.65 -10.15 16 26 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.04 1.28 8.13 -2.39 -0.02 1.26 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 1.27 7.68 -2.39 -0.02 1.25 16 36 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.04 2.01 7.44 -2.39 -0.02 1.99 16 38 H 0.05 2.32 5.64 -2.39 -0.01 2.30 16 39 H 0.02 1.23 6.05 -2.39 -0.01 1.21 16 40 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 41 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 Total: -1.00 -76.50 320.11 2.11 -74.39 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.94 Total: 11.76 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 3.91 Total: -16.31 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -4.37 Total: -84.48 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.25 Total: -33.19 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.88 Total: 47.83 kcal Total: -76.50 2.11 -74.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191197275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.632 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds