Wall clock time and date at job start Mon Mar 30 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99811 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99958 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.47962 * 111.00020 * 292.68591 * 13 12 10 15 15 C 1.52955 * 109.38620 * 178.96859 * 14 13 12 16 16 C 1.52127 * 109.20466 * 330.24827 * 15 14 13 17 17 H 1.08995 * 111.96802 * 333.79650 * 16 15 14 18 18 C 1.54455 * 111.23893 * 208.37481 * 16 15 14 19 19 N 1.48294 * 104.25534 * 205.45626 * 18 16 15 20 20 C 1.47972 * 108.32673 * 24.80594 * 19 18 16 21 21 C 1.53783 * 106.74148 * 359.69997 * 20 19 18 22 22 H 1.08997 * 110.99863 * 95.36140 * 21 20 19 23 23 C 1.52499 * 111.43382 * 219.51475 * 21 20 19 24 24 C 1.48156 * 111.00192 * 169.99886 * 13 12 10 25 25 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 28 28 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 29 29 H 1.08993 * 109.48575 * 298.94640 * 14 13 12 30 30 H 1.09003 * 109.48475 * 58.99460 * 14 13 12 31 31 H 1.09003 * 109.51889 * 210.33362 * 15 14 13 32 32 H 1.08997 * 109.51692 * 90.16978 * 15 14 13 33 33 H 1.08997 * 110.47692 * 86.76647 * 18 16 15 34 34 H 1.09001 * 110.47532 * 324.14788 * 18 16 15 35 35 H 1.00901 * 111.00153 * 262.70001 * 19 18 16 36 36 H 1.09004 * 110.00380 * 240.37612 * 20 19 18 37 37 H 1.09004 * 109.99981 * 119.01955 * 20 19 18 38 38 H 1.09004 * 109.63418 * 50.51985 * 23 21 20 39 39 H 1.08994 * 109.79778 * 290.02186 * 23 21 20 40 40 H 1.08996 * 109.80634 * 350.33723 * 24 13 12 41 41 H 1.09011 * 109.80579 * 111.21741 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 2.9477 -6.0369 -1.2718 15 6 3.9467 -7.1941 -1.2216 16 6 4.3839 -7.4157 0.2186 17 1 4.3008 -6.5067 0.8144 18 6 5.8093 -8.0066 0.2860 19 7 5.8451 -8.7269 1.5818 20 6 4.4596 -9.0966 1.9470 21 6 3.5499 -8.5690 0.8250 22 1 3.3461 -9.3468 0.0891 23 6 2.2523 -7.9945 1.3834 24 6 1.5079 -7.2681 0.2435 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0016 27 1 0.6174 -4.9204 0.8924 28 1 0.6167 -4.9209 -0.8875 29 1 2.2519 -6.1927 -2.0961 30 1 3.4841 -5.0997 -1.4207 31 1 4.8161 -6.9515 -1.8327 32 1 3.4744 -8.0997 -1.6022 33 1 6.5533 -7.2101 0.2720 34 1 5.9746 -8.6987 -0.5396 35 1 6.2689 -8.1586 2.2999 36 1 4.1881 -8.6340 2.8959 37 1 4.3702 -10.1804 2.0210 38 1 2.4784 -7.2877 2.1818 39 1 1.6295 -8.7998 1.7727 40 1 0.4741 -7.0843 0.5357 41 1 1.5344 -7.8759 -0.6611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310539277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:17 Heat of formation + Delta-G solvation = -27.030928 kcal Electronic energy + Delta-G solvation = -21209.370068 eV Core-core repulsion = 18123.786991 eV Total energy + Delta-G solvation = -3085.583078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93070 -38.24950 -36.32505 -33.88769 -32.46955 -32.12551 -31.17217 -27.97759 -27.90337 -25.33566 -23.72145 -23.15418 -21.34689 -20.20061 -19.71086 -19.00210 -17.82491 -16.27337 -16.13135 -15.40375 -15.24293 -14.83985 -14.42610 -14.02036 -13.81830 -13.76742 -13.28384 -13.05543 -12.75798 -12.71602 -12.23245 -11.99658 -11.86958 -11.53902 -11.33941 -11.08755 -11.04663 -10.75035 -10.59018 -10.48329 -10.43631 -10.31519 -10.21019 -10.04456 -9.45511 -8.48011 -8.36892 -7.96668 -7.80335 -6.41195 -3.81999 3.19910 3.25569 3.29840 3.91752 4.01749 4.25100 4.27322 4.62810 4.74872 4.98434 5.07064 5.21589 5.27824 5.33272 5.33991 5.46438 5.55182 5.61877 5.66507 5.69501 5.79806 5.83196 5.88366 5.95771 5.98281 6.02684 6.09401 6.21039 6.22956 6.29874 6.39560 6.59919 6.80646 6.82059 7.33940 7.36661 7.40444 7.55231 8.07040 8.62839 9.18789 9.55619 10.07664 10.76590 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.031830 B = 0.004260 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.466228 B = 6571.362559 C = 6930.762142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.042 3.958 13 N -0.504 5.504 14 C 0.046 3.954 15 C -0.102 4.102 16 C -0.103 4.103 17 H 0.109 0.891 18 C 0.045 3.955 19 N -0.689 5.689 20 C 0.051 3.949 21 C -0.103 4.103 22 H 0.073 0.927 23 C -0.100 4.100 24 C 0.044 3.956 25 H 0.272 0.728 26 H 0.391 0.609 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.023 0.977 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.336 0.664 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -15.726 0.472 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.462 6.462 12 C -0.090 4.090 13 N -0.229 5.229 14 C -0.081 4.081 15 C -0.140 4.140 16 C -0.122 4.122 17 H 0.127 0.873 18 C -0.084 4.084 19 N -0.317 5.317 20 C -0.078 4.078 21 C -0.122 4.122 22 H 0.091 0.909 23 C -0.139 4.139 24 C -0.084 4.084 25 H 0.081 0.919 26 H 0.224 0.776 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.773 -16.120 0.599 16.567 hybrid contribution -1.337 1.604 -0.423 2.131 sum 2.436 -14.516 0.176 14.720 Atomic orbital electron populations 1.69605 1.05936 1.28216 1.50691 1.25244 0.95611 0.99675 0.97376 0.85931 0.78767 0.80545 0.79050 1.19942 1.20991 1.19915 1.19638 0.93293 0.82256 1.47627 0.88023 1.41875 1.09162 1.04616 1.64586 1.19762 0.88425 0.84537 0.84268 1.90479 1.13678 1.86930 1.55064 1.21983 0.94087 0.91644 1.01252 1.62913 1.24820 1.01105 1.34049 1.22576 0.95940 1.00932 0.88665 1.21418 0.98637 0.97561 0.96384 1.22521 0.93432 0.99103 0.97180 0.87332 1.23025 0.96988 0.96184 0.92188 1.62062 1.18463 1.45839 1.05298 1.22648 0.87492 1.00249 0.97461 1.22320 0.95404 0.96970 0.97540 0.90902 1.21737 0.95404 0.98649 0.98096 1.22744 0.96423 0.91044 0.98177 0.91855 0.77551 0.89499 0.93678 0.95900 0.88144 0.91648 0.92848 0.91603 0.91112 0.84875 0.92886 0.91388 0.90886 0.92392 0.92173 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.57 -14.28 5.29 -10.96 -0.06 -14.33 16 10 C 0.44 10.36 7.51 -10.99 -0.08 10.28 16 11 O -0.58 -15.21 14.00 5.55 0.08 -15.13 16 12 C 0.04 0.74 5.24 -4.98 -0.03 0.72 16 13 N -0.50 -8.10 2.98 -233.25 -0.69 -8.80 16 14 C 0.05 0.74 4.90 -3.26 -0.02 0.72 16 15 C -0.10 -1.33 5.05 -27.20 -0.14 -1.47 16 16 C -0.10 -1.35 2.27 -89.41 -0.20 -1.56 16 17 H 0.11 1.82 7.07 -51.93 -0.37 1.45 16 18 C 0.05 0.55 6.91 -2.29 -0.02 0.53 16 19 N -0.69 -8.10 7.43 -110.62 -0.82 -8.92 16 20 C 0.05 0.56 7.20 -2.83 -0.02 0.54 16 21 C -0.10 -1.18 2.49 -89.57 -0.22 -1.41 16 22 H 0.07 0.82 7.58 -51.93 -0.39 0.42 16 23 C -0.10 -1.16 5.21 -26.30 -0.14 -1.30 16 24 C 0.04 0.56 5.46 -2.44 -0.01 0.55 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 27 H 0.09 1.41 7.91 -51.93 -0.41 1.00 16 28 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 1.97 6.01 -51.93 -0.31 1.65 16 31 H 0.06 0.82 7.92 -51.93 -0.41 0.41 16 32 H 0.05 0.63 6.87 -51.93 -0.36 0.27 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.34 3.66 8.92 -39.29 -0.35 3.31 16 36 H 0.05 0.57 7.76 -51.93 -0.40 0.17 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.71 7.48 -51.93 -0.39 0.32 16 41 H 0.05 0.62 6.74 -51.92 -0.35 0.27 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -29.60 315.38 -8.68 -38.28 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.52 Total: 12.30 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.11 Total: -0.33 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.85 Total: -55.91 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.08 Total: -15.13 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.60 -8.68 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310539277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.250 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds