Wall clock time and date at job start Mon Mar 30 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48503 * 109.46819 * 239.99811 * 3 2 1 5 5 H 1.48503 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47620 * 119.99958 * 3 2 1 7 7 C 1.38942 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00356 * 180.27782 * 7 2 1 9 9 N 1.37105 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99968 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.47962 * 111.00020 * 292.68591 * 13 12 10 15 15 C 1.52955 * 109.38620 * 178.96859 * 14 13 12 16 16 C 1.52127 * 109.20466 * 330.24827 * 15 14 13 17 17 H 1.08995 * 111.96802 * 333.79650 * 16 15 14 18 18 C 1.54455 * 111.23893 * 208.37481 * 16 15 14 19 19 N 1.48294 * 104.25534 * 205.45626 * 18 16 15 20 20 C 1.47972 * 108.32673 * 24.80594 * 19 18 16 21 21 C 1.53783 * 106.74148 * 359.69997 * 20 19 18 22 22 H 1.08997 * 110.99863 * 95.36140 * 21 20 19 23 23 C 1.52499 * 111.43382 * 219.51475 * 21 20 19 24 24 C 1.48156 * 111.00192 * 169.99886 * 13 12 10 25 25 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99984 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46978 * 300.00347 * 12 10 9 28 28 H 1.08996 * 109.47197 * 59.99985 * 12 10 9 29 29 H 1.08993 * 109.48575 * 298.94640 * 14 13 12 30 30 H 1.09003 * 109.48475 * 58.99460 * 14 13 12 31 31 H 1.09003 * 109.51889 * 210.33362 * 15 14 13 32 32 H 1.08997 * 109.51692 * 90.16978 * 15 14 13 33 33 H 1.08997 * 110.47692 * 86.76647 * 18 16 15 34 34 H 1.09001 * 110.47532 * 324.14788 * 18 16 15 35 35 H 1.00901 * 111.00153 * 262.70001 * 19 18 16 36 36 H 1.09004 * 110.00380 * 240.37612 * 20 19 18 37 37 H 1.09004 * 109.99981 * 119.01955 * 20 19 18 38 38 H 1.09004 * 109.63418 * 50.51985 * 23 21 20 39 39 H 1.08994 * 109.79778 * 290.02186 * 23 21 20 40 40 H 1.08996 * 109.80634 * 350.33723 * 24 13 12 41 41 H 1.09011 * 109.80579 * 111.21741 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0051 9 7 1.3233 -2.3906 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5578 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1982 -5.9795 0.0027 14 6 2.9477 -6.0369 -1.2718 15 6 3.9467 -7.1941 -1.2216 16 6 4.3839 -7.4157 0.2186 17 1 4.3008 -6.5067 0.8144 18 6 5.8093 -8.0066 0.2860 19 7 5.8451 -8.7269 1.5818 20 6 4.4596 -9.0966 1.9470 21 6 3.5499 -8.5690 0.8250 22 1 3.3461 -9.3468 0.0891 23 6 2.2523 -7.9945 1.3834 24 6 1.5079 -7.2681 0.2435 25 1 -0.4850 0.8401 -0.0004 26 1 0.3533 -2.3906 0.0016 27 1 0.6174 -4.9204 0.8924 28 1 0.6167 -4.9209 -0.8875 29 1 2.2519 -6.1927 -2.0961 30 1 3.4841 -5.0997 -1.4207 31 1 4.8161 -6.9515 -1.8327 32 1 3.4744 -8.0997 -1.6022 33 1 6.5533 -7.2101 0.2720 34 1 5.9746 -8.6987 -0.5396 35 1 6.2689 -8.1586 2.2999 36 1 4.1881 -8.6340 2.8959 37 1 4.3702 -10.1804 2.0210 38 1 2.4784 -7.2877 2.1818 39 1 1.6295 -8.7998 1.7727 40 1 0.4741 -7.0843 0.5357 41 1 1.5344 -7.8759 -0.6611 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310539277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:17 Heat of formation + Delta-G solvation = -48.797936 kcal Electronic energy + Delta-G solvation = -21210.313956 eV Core-core repulsion = 18123.786991 eV Total energy + Delta-G solvation = -3086.526966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05672 -39.93958 -37.60690 -35.87897 -33.52657 -33.39932 -33.04214 -29.29407 -28.96551 -26.98701 -25.24298 -24.21388 -22.32671 -21.36058 -21.04065 -20.49770 -19.79749 -17.81748 -17.16355 -16.78637 -16.60666 -16.37092 -15.92523 -15.61043 -15.38947 -14.96137 -14.58854 -14.07337 -13.99573 -13.88011 -13.57608 -13.45969 -13.18846 -13.00950 -12.88873 -12.51658 -12.43736 -12.14901 -12.11770 -11.85257 -11.75516 -11.52837 -11.40915 -11.31022 -11.01817 -10.23683 -9.99433 -9.37504 -9.10549 -8.46199 -5.94728 1.38945 1.40495 1.51351 2.07342 2.28289 2.80474 3.20748 3.35542 3.40091 3.70267 3.79175 3.94953 4.17479 4.25162 4.29189 4.37988 4.40256 4.50331 4.57856 4.60435 4.64297 4.76056 4.77553 4.83512 4.89455 5.01708 5.03167 5.07201 5.13444 5.22113 5.36043 5.40354 5.49919 5.72552 5.89862 5.92925 6.12440 6.26129 6.45918 6.61916 7.13854 7.57969 8.14241 8.71166 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.031830 B = 0.004260 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.466228 B = 6571.362559 C = 6930.762142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.577 5.577 10 C 0.442 3.558 11 O -0.612 6.612 12 C 0.054 3.946 13 N -0.520 5.520 14 C 0.049 3.951 15 C -0.094 4.094 16 C -0.101 4.101 17 H 0.068 0.932 18 C 0.049 3.951 19 N -0.694 5.694 20 C 0.051 3.949 21 C -0.096 4.096 22 H 0.087 0.913 23 C -0.095 4.095 24 C 0.045 3.955 25 H 0.277 0.723 26 H 0.395 0.605 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.339 0.661 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 -17.347 0.443 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.461 4.461 8 H 0.096 0.904 9 N -0.215 5.215 10 C 0.229 3.771 11 O -0.498 6.498 12 C -0.078 4.078 13 N -0.245 5.245 14 C -0.079 4.079 15 C -0.133 4.133 16 C -0.121 4.121 17 H 0.087 0.913 18 C -0.080 4.080 19 N -0.321 5.321 20 C -0.078 4.078 21 C -0.115 4.115 22 H 0.105 0.895 23 C -0.134 4.134 24 C -0.082 4.082 25 H 0.086 0.914 26 H 0.228 0.772 27 H 0.125 0.875 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.154 0.846 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.037 -17.765 0.575 18.031 hybrid contribution -1.087 2.060 -0.406 2.364 sum 1.950 -15.704 0.169 15.826 Atomic orbital electron populations 1.69668 1.06822 1.29279 1.50557 1.26004 0.96511 1.02321 0.96385 0.85015 0.77778 0.76801 0.78900 1.19742 1.19467 1.19796 1.19600 0.92609 0.84058 1.49850 0.90440 1.41952 1.09243 1.04746 1.65529 1.20813 0.88353 0.85906 0.81979 1.90462 1.15628 1.87770 1.55931 1.21862 0.93831 0.89139 1.02942 1.62890 1.25143 1.02214 1.34205 1.22454 0.96409 0.99883 0.89121 1.21383 0.98096 0.97253 0.96528 1.22352 0.94853 0.98223 0.96681 0.91328 1.22984 0.96093 0.96154 0.92812 1.62113 1.19050 1.45714 1.05243 1.22690 0.86881 1.00920 0.97299 1.22302 0.95087 0.96322 0.97801 0.89488 1.21700 0.95767 0.98808 0.97089 1.22852 0.96939 0.89231 0.99202 0.91352 0.77155 0.87549 0.91889 0.94926 0.92716 0.91567 0.90483 0.92307 0.90180 0.84614 0.92879 0.90151 0.92973 0.89705 0.90776 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 3 Si 0.99 43.28 29.55 68.60 2.03 45.31 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.58 -29.89 5.29 -306.99 -1.62 -31.52 16 10 C 0.44 21.15 7.51 87.66 0.66 21.81 16 11 O -0.61 -33.73 14.00 -3.07 -0.04 -33.77 16 12 C 0.05 1.86 5.24 85.56 0.45 2.31 16 13 N -0.52 -16.28 2.98 -891.88 -2.66 -18.94 16 14 C 0.05 1.56 4.90 86.08 0.42 1.98 16 15 C -0.09 -2.37 5.05 30.29 0.15 -2.21 16 16 C -0.10 -2.58 2.27 -10.01 -0.02 -2.61 16 17 H 0.07 2.36 7.07 -2.39 -0.02 2.34 16 18 C 0.05 1.14 6.91 86.53 0.60 1.73 16 19 N -0.69 -15.35 7.43 -503.88 -3.75 -19.10 16 20 C 0.05 1.02 7.20 86.36 0.62 1.64 16 21 C -0.10 -1.97 2.49 -10.12 -0.03 -1.99 16 22 H 0.09 1.60 7.58 -2.39 -0.02 1.58 16 23 C -0.10 -1.96 5.21 30.87 0.16 -1.80 16 24 C 0.04 1.01 5.46 86.51 0.47 1.48 16 25 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 26 H 0.39 19.49 7.90 -92.71 -0.73 18.75 16 27 H 0.11 3.29 7.91 -2.39 -0.02 3.27 16 28 H 0.06 1.98 8.11 -2.39 -0.02 1.96 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 2.24 6.01 -2.39 -0.01 2.22 16 31 H 0.07 1.63 7.92 -2.39 -0.02 1.61 16 32 H 0.08 1.58 6.87 -2.39 -0.02 1.57 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.73 8.03 -2.39 -0.02 1.71 16 35 H 0.34 7.15 8.92 -89.69 -0.80 6.35 16 36 H 0.05 1.05 7.76 -2.39 -0.02 1.03 16 37 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.05 1.31 8.02 -2.38 -0.02 1.29 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.49 7.48 -2.39 -0.02 1.47 16 41 H 0.07 1.34 6.74 -2.38 -0.02 1.32 16 Total: -1.00 -65.34 315.38 -1.49 -66.82 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -0.49 Total: 37.11 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 4.77 Total: 3.96 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -7.74 Total: -119.44 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.04 Total: -33.77 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.34 -1.49 -66.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310539277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.025 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds