Wall clock time and date at job start Mon Mar 30 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00419 * 2 1 4 4 C 1.52992 * 109.47503 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46798 * 64.99921 * 4 3 2 6 6 C 1.37098 * 119.99864 * 269.99737 * 5 4 3 7 7 H 1.08001 * 119.99721 * 145.33092 * 6 5 4 8 8 C 1.38949 * 120.00054 * 325.32753 * 6 5 4 9 9 N 1.31407 * 120.00121 * 338.84414 * 8 6 5 10 10 Si 1.86804 * 119.99892 * 158.84672 * 8 6 5 11 11 H 1.48504 * 109.47079 * 89.99655 * 10 8 6 12 12 H 1.48496 * 109.47144 * 210.00235 * 10 8 6 13 13 H 1.48502 * 109.46974 * 330.00291 * 10 8 6 14 14 C 1.34773 * 119.99992 * 90.00062 * 5 4 3 15 15 O 1.21291 * 120.00074 * 354.32432 * 14 5 4 16 16 C 1.50703 * 120.00131 * 174.32375 * 14 5 4 17 17 C 1.52995 * 109.47071 * 185.86053 * 16 14 5 18 18 H 1.09000 * 115.55469 * 32.01334 * 17 16 14 19 19 C 1.53077 * 117.53309 * 246.29311 * 17 16 14 20 20 C 1.53006 * 117.49533 * 177.67812 * 17 16 14 21 21 H 1.09007 * 117.49542 * 215.02253 * 20 17 16 22 22 C 1.52995 * 117.50050 * 0.02562 * 20 17 16 23 23 C 1.52996 * 117.51822 * 226.21945 * 22 20 17 24 24 C 1.53002 * 117.49793 * 294.85159 * 22 20 17 25 25 H 1.08996 * 109.47154 * 300.00763 * 1 2 3 26 26 H 1.08999 * 109.46503 * 60.00323 * 1 2 3 27 27 H 1.08995 * 109.47029 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46889 * 59.99695 * 3 2 1 29 29 H 1.09000 * 109.46581 * 300.00018 * 3 2 1 30 30 H 1.09001 * 109.47384 * 305.00184 * 4 3 2 31 31 H 1.08998 * 109.47379 * 184.99944 * 4 3 2 32 32 H 0.97005 * 119.99842 * 185.03413 * 9 8 6 33 33 H 1.08995 * 109.46980 * 65.86000 * 16 14 5 34 34 H 1.09002 * 109.47038 * 305.85771 * 16 14 5 35 35 H 1.09000 * 117.49322 * 145.04799 * 19 17 16 36 36 H 1.08998 * 117.50946 * 0.02562 * 19 17 16 37 37 H 1.09001 * 115.55026 * 80.51793 * 22 20 17 38 38 H 1.09004 * 117.50080 * 214.96736 * 23 22 20 39 39 H 1.08998 * 117.49694 * 359.97438 * 23 22 20 40 40 H 1.08994 * 117.49592 * 359.97340 * 24 22 20 41 41 H 1.08998 * 117.49676 * 144.99759 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7992 -1.3345 7 1 3.8680 -1.3060 -2.2601 8 6 4.5168 -1.5285 -0.2285 9 7 5.1816 -0.9346 0.7369 10 14 4.1348 -3.3535 -0.1140 11 1 5.2387 -4.1301 -0.7333 12 1 3.9961 -3.7416 1.3126 13 1 2.8659 -3.6395 -0.8304 14 6 4.2633 1.3328 -2.3200 15 8 4.0584 2.5276 -2.2802 16 6 4.8384 0.7081 -3.5651 17 6 5.2054 1.8070 -4.5643 18 1 5.5292 2.7513 -4.1267 19 6 4.4106 1.8694 -5.8710 20 6 5.8591 1.3767 -5.8790 21 1 6.6132 2.0379 -6.3062 22 6 6.0953 -0.1195 -6.0941 23 6 7.4656 -0.5504 -6.6207 24 6 7.0872 -0.8192 -5.1627 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8509 0.5685 0.8427 31 1 3.9785 2.1765 0.0902 32 1 5.5373 -1.4564 1.4732 33 1 4.1000 0.0425 -4.0119 34 1 5.7315 0.1389 -3.3068 35 1 4.2118 2.8547 -6.2925 36 1 3.6257 1.1276 -6.0188 37 1 5.2271 -0.6898 -6.4246 38 1 7.4990 -1.4041 -7.2975 39 1 8.1991 0.2323 -6.8144 40 1 7.5718 -0.2134 -4.3971 41 1 6.8716 -1.8497 -4.8805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712926929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:54 Heat of formation + Delta-G solvation = -29.781762 kcal Electronic energy + Delta-G solvation = -21203.705214 eV Core-core repulsion = 18085.710100 eV Total energy + Delta-G solvation = -3117.995114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.03119 -38.00015 -36.82295 -35.02038 -34.43062 -31.48197 -29.90456 -27.85975 -25.73147 -24.57293 -23.43195 -22.28741 -21.94334 -20.83816 -19.22355 -18.56307 -16.85962 -16.13631 -15.44774 -15.31242 -15.13062 -14.94761 -14.38369 -14.29855 -13.98477 -13.74012 -13.27863 -12.59516 -12.44350 -11.98671 -11.89632 -11.37091 -11.23664 -11.11905 -11.10034 -10.97773 -10.84589 -10.77013 -10.64344 -10.36734 -10.34907 -10.25921 -9.95255 -9.34089 -9.08712 -9.03013 -8.89847 -8.29932 -7.40808 -6.25683 -3.89665 3.18821 3.29357 3.35528 3.89423 3.98345 4.21424 4.32380 4.58526 4.80737 4.87211 5.12850 5.16087 5.23184 5.44236 5.46669 5.64314 5.70247 5.72981 5.77765 5.82873 5.99347 6.03000 6.08294 6.15479 6.18403 6.20976 6.32507 6.37901 6.43526 6.45426 6.51693 6.56380 6.72167 6.87543 6.94109 7.36818 7.59068 7.89243 8.08280 8.48129 9.21610 9.63363 10.04636 10.76703 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.006766 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.603819 B = 4137.247945 C = 5143.605347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.431 5.431 6 C -0.317 4.317 7 H 0.085 0.915 8 C 0.051 3.949 9 N -0.867 5.867 10 Si 0.914 3.086 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.466 3.534 15 O -0.613 6.613 16 C -0.084 4.084 17 C -0.114 4.114 18 H 0.110 0.890 19 C -0.174 4.174 20 C -0.131 4.131 21 H 0.099 0.901 22 C -0.118 4.118 23 C -0.185 4.185 24 C -0.170 4.170 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.268 0.732 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -0.158 -7.304 7.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.023 4.023 4 C -0.016 4.016 5 N -0.148 5.148 6 C -0.445 4.445 7 H 0.103 0.897 8 C -0.154 4.154 9 N -0.504 5.504 10 Si 0.741 3.259 11 H -0.207 1.207 12 H -0.209 1.209 13 H -0.194 1.194 14 C 0.256 3.744 15 O -0.501 6.501 16 C -0.124 4.124 17 C -0.132 4.132 18 H 0.128 0.872 19 C -0.211 4.211 20 C -0.149 4.149 21 H 0.117 0.883 22 C -0.136 4.136 23 C -0.222 4.222 24 C -0.207 4.207 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.095 0.192 -7.031 7.119 hybrid contribution -0.521 -0.783 0.153 0.953 sum -1.616 -0.591 -6.878 7.090 Atomic orbital electron populations 1.22636 0.83678 1.01618 0.98739 1.88155 1.17132 1.27740 1.94995 1.23010 0.96722 0.84228 0.98342 1.21556 0.89250 0.98938 0.91864 1.43357 1.56011 1.06197 1.09256 1.19243 1.45215 0.80608 0.99477 0.89726 1.25208 0.94502 0.99724 0.96005 1.69766 1.31964 1.36527 1.12192 0.86140 0.79030 0.83046 0.77635 1.20715 1.20934 1.19371 1.20448 0.81250 0.86284 0.86436 1.90486 1.59359 1.15828 1.84405 1.20881 1.01870 0.96498 0.93119 1.22203 1.02147 1.00671 0.88195 0.87235 1.23051 0.93609 1.01852 1.02606 1.21843 0.96082 0.93995 1.03028 0.88296 1.21641 0.93263 0.94113 1.04555 1.22963 0.98461 1.03076 0.97669 1.22975 1.03226 1.01649 0.92850 0.95265 0.95065 0.90537 0.94582 0.94291 0.86247 0.91460 0.92152 0.90732 0.88792 0.89396 0.89197 0.88073 0.89338 0.89210 0.88383 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.98 10.18 -35.23 -0.36 -8.34 16 3 C 0.05 1.18 6.28 37.15 0.23 1.41 16 4 C 0.11 2.63 5.39 -4.04 -0.02 2.61 16 5 N -0.43 -10.94 2.52 -114.81 -0.29 -11.23 16 6 C -0.32 -8.11 8.10 -14.93 -0.12 -8.23 16 7 H 0.09 2.10 7.18 -52.49 -0.38 1.73 16 8 C 0.05 1.29 4.99 -17.47 -0.09 1.20 16 9 N -0.87 -22.97 11.24 55.50 0.62 -22.35 16 10 Si 0.91 20.19 29.61 -169.99 -5.03 15.16 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 14 C 0.47 11.44 7.61 -10.99 -0.08 11.35 16 15 O -0.61 -16.17 15.31 5.55 0.08 -16.08 16 16 C -0.08 -1.71 3.61 -27.88 -0.10 -1.81 16 17 C -0.11 -2.03 5.31 -90.58 -0.48 -2.51 16 18 H 0.11 2.14 7.49 -51.93 -0.39 1.75 16 19 C -0.17 -2.65 9.90 -26.69 -0.26 -2.92 16 20 C -0.13 -1.91 5.85 -90.62 -0.53 -2.44 16 21 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 22 C -0.12 -1.61 5.12 -90.62 -0.46 -2.07 16 23 C -0.18 -2.21 10.25 -26.73 -0.27 -2.48 16 24 C -0.17 -2.37 8.66 -26.73 -0.23 -2.60 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.12 3.12 5.29 -51.93 -0.27 2.85 16 31 H 0.07 1.64 7.51 -51.93 -0.39 1.25 16 32 H 0.27 6.75 8.32 -40.82 -0.34 6.41 16 33 H 0.07 1.47 7.54 -51.93 -0.39 1.08 16 34 H 0.09 1.93 6.21 -51.93 -0.32 1.61 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 1.34 8.04 -51.93 -0.42 0.92 16 37 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.10 1.47 7.75 -51.93 -0.40 1.06 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -29.02 337.14 -7.95 -36.97 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.75 Total: 7.66 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.31 Total: -6.86 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.33 Total: -33.59 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.27 Total: -24.42 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.02 -7.95 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712926929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.192 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds