Wall clock time and date at job start Mon Mar 30 2020 04:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00419 * 2 1 4 4 C 1.52992 * 109.47503 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46798 * 64.99921 * 4 3 2 6 6 C 1.37098 * 119.99864 * 269.99737 * 5 4 3 7 7 H 1.08001 * 119.99721 * 145.33092 * 6 5 4 8 8 C 1.38949 * 120.00054 * 325.32753 * 6 5 4 9 9 N 1.31407 * 120.00121 * 338.84414 * 8 6 5 10 10 Si 1.86804 * 119.99892 * 158.84672 * 8 6 5 11 11 H 1.48504 * 109.47079 * 89.99655 * 10 8 6 12 12 H 1.48496 * 109.47144 * 210.00235 * 10 8 6 13 13 H 1.48502 * 109.46974 * 330.00291 * 10 8 6 14 14 C 1.34773 * 119.99992 * 90.00062 * 5 4 3 15 15 O 1.21291 * 120.00074 * 354.32432 * 14 5 4 16 16 C 1.50703 * 120.00131 * 174.32375 * 14 5 4 17 17 C 1.52995 * 109.47071 * 185.86053 * 16 14 5 18 18 H 1.09000 * 115.55469 * 32.01334 * 17 16 14 19 19 C 1.53077 * 117.53309 * 246.29311 * 17 16 14 20 20 C 1.53006 * 117.49533 * 177.67812 * 17 16 14 21 21 H 1.09007 * 117.49542 * 215.02253 * 20 17 16 22 22 C 1.52995 * 117.50050 * 0.02562 * 20 17 16 23 23 C 1.52996 * 117.51822 * 226.21945 * 22 20 17 24 24 C 1.53002 * 117.49793 * 294.85159 * 22 20 17 25 25 H 1.08996 * 109.47154 * 300.00763 * 1 2 3 26 26 H 1.08999 * 109.46503 * 60.00323 * 1 2 3 27 27 H 1.08995 * 109.47029 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46889 * 59.99695 * 3 2 1 29 29 H 1.09000 * 109.46581 * 300.00018 * 3 2 1 30 30 H 1.09001 * 109.47384 * 305.00184 * 4 3 2 31 31 H 1.08998 * 109.47379 * 184.99944 * 4 3 2 32 32 H 0.97005 * 119.99842 * 185.03413 * 9 8 6 33 33 H 1.08995 * 109.46980 * 65.86000 * 16 14 5 34 34 H 1.09002 * 109.47038 * 305.85771 * 16 14 5 35 35 H 1.09000 * 117.49322 * 145.04799 * 19 17 16 36 36 H 1.08998 * 117.50946 * 0.02562 * 19 17 16 37 37 H 1.09001 * 115.55026 * 80.51793 * 22 20 17 38 38 H 1.09004 * 117.50080 * 214.96736 * 23 22 20 39 39 H 1.08998 * 117.49694 * 359.97438 * 23 22 20 40 40 H 1.08994 * 117.49592 * 359.97340 * 24 22 20 41 41 H 1.08998 * 117.49676 * 144.99759 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7992 -1.3345 7 1 3.8680 -1.3060 -2.2601 8 6 4.5168 -1.5285 -0.2285 9 7 5.1816 -0.9346 0.7369 10 14 4.1348 -3.3535 -0.1140 11 1 5.2387 -4.1301 -0.7333 12 1 3.9961 -3.7416 1.3126 13 1 2.8659 -3.6395 -0.8304 14 6 4.2633 1.3328 -2.3200 15 8 4.0584 2.5276 -2.2802 16 6 4.8384 0.7081 -3.5651 17 6 5.2054 1.8070 -4.5643 18 1 5.5292 2.7513 -4.1267 19 6 4.4106 1.8694 -5.8710 20 6 5.8591 1.3767 -5.8790 21 1 6.6132 2.0379 -6.3062 22 6 6.0953 -0.1195 -6.0941 23 6 7.4656 -0.5504 -6.6207 24 6 7.0872 -0.8192 -5.1627 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8509 0.5685 0.8427 31 1 3.9785 2.1765 0.0902 32 1 5.5373 -1.4564 1.4732 33 1 4.1000 0.0425 -4.0119 34 1 5.7315 0.1389 -3.3068 35 1 4.2118 2.8547 -6.2925 36 1 3.6257 1.1276 -6.0188 37 1 5.2271 -0.6898 -6.4246 38 1 7.4990 -1.4041 -7.2975 39 1 8.1991 0.2323 -6.8144 40 1 7.5718 -0.2134 -4.3971 41 1 6.8716 -1.8497 -4.8805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712926929.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:53 Heat of formation + Delta-G solvation = -45.124852 kcal Electronic energy + Delta-G solvation = -21204.370540 eV Core-core repulsion = 18085.710100 eV Total energy + Delta-G solvation = -3118.660440 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71109 -39.43736 -38.45989 -36.60756 -35.97488 -33.45207 -31.65098 -29.48955 -27.26987 -26.45032 -24.59416 -23.86695 -23.08775 -22.20859 -20.99210 -20.01264 -18.65066 -17.91359 -17.13509 -16.91704 -16.48837 -16.33788 -16.15434 -16.00669 -15.46917 -15.33308 -14.74088 -14.21220 -13.85186 -13.59341 -13.53342 -13.11910 -12.85093 -12.77611 -12.53547 -12.44837 -12.26298 -12.25675 -12.11626 -12.08812 -11.77842 -11.57652 -11.48680 -10.97817 -10.57694 -10.51624 -10.33023 -10.17121 -9.39037 -8.20952 -5.90640 1.42985 1.50808 1.61334 2.07380 2.37907 2.71223 2.98155 3.05955 3.19439 3.24826 3.71244 3.98799 4.02703 4.21695 4.26054 4.26672 4.33861 4.45808 4.50137 4.53566 4.57895 4.58952 4.62808 4.72700 4.81430 4.88276 4.90488 4.94234 5.02306 5.12101 5.14790 5.32050 5.35932 5.39876 5.42099 5.43345 5.60616 6.04987 6.42617 6.50313 7.23839 7.68300 8.09635 8.82088 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.006766 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.603819 B = 4137.247945 C = 5143.605347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.394 6.394 3 C 0.067 3.933 4 C 0.104 3.896 5 N -0.441 5.441 6 C -0.328 4.328 7 H 0.089 0.911 8 C 0.013 3.987 9 N -0.895 5.895 10 Si 0.975 3.025 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.450 3.550 15 O -0.639 6.639 16 C -0.067 4.067 17 C -0.145 4.145 18 H 0.086 0.914 19 C -0.164 4.164 20 C -0.106 4.106 21 H 0.115 0.885 22 C -0.129 4.129 23 C -0.159 4.159 24 C -0.188 4.188 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.270 0.730 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 -1.366 -8.826 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C -0.011 4.011 4 C -0.020 4.020 5 N -0.158 5.158 6 C -0.456 4.456 7 H 0.106 0.894 8 C -0.189 4.189 9 N -0.534 5.534 10 Si 0.800 3.200 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.241 3.759 15 O -0.528 6.528 16 C -0.106 4.106 17 C -0.164 4.164 18 H 0.104 0.896 19 C -0.201 4.201 20 C -0.124 4.124 21 H 0.133 0.867 22 C -0.147 4.147 23 C -0.196 4.196 24 C -0.225 4.225 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.592 -1.018 -8.561 8.767 hybrid contribution -0.386 -0.364 0.662 0.848 sum -1.978 -1.382 -7.900 8.260 Atomic orbital electron populations 1.22884 0.80841 1.03267 1.00194 1.88081 1.20273 1.27707 1.95265 1.22767 0.94653 0.84568 0.99063 1.21509 0.91541 0.97709 0.91246 1.43593 1.56073 1.06499 1.09644 1.19444 1.45426 0.80765 0.99917 0.89377 1.25936 0.93996 1.03507 0.95488 1.69870 1.32752 1.38025 1.12739 0.85212 0.79021 0.78440 0.77370 1.19555 1.21099 1.19112 1.21225 0.80902 0.86185 0.87551 1.90449 1.60367 1.16921 1.85069 1.20717 1.01134 0.96970 0.91778 1.22002 1.05965 0.99263 0.89141 0.89550 1.23147 0.94227 1.02866 0.99856 1.21915 0.96115 0.95012 0.99325 0.86678 1.21708 0.94448 0.93380 1.05210 1.23058 0.96920 1.03602 0.95991 1.22932 1.04225 1.01384 0.93919 0.93029 0.94302 0.88860 0.91859 0.95350 0.87940 0.92723 0.92028 0.90234 0.89499 0.87983 0.88706 0.87522 0.87371 0.88179 0.90105 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.01 16 2 O -0.39 -17.10 10.18 -148.98 -1.52 -18.62 16 3 C 0.07 2.90 6.28 71.98 0.45 3.35 16 4 C 0.10 5.22 5.39 86.38 0.47 5.69 16 5 N -0.44 -22.95 2.52 -635.54 -1.60 -24.55 16 6 C -0.33 -16.91 8.10 84.04 0.68 -16.23 16 7 H 0.09 4.39 7.18 -2.91 -0.02 4.37 16 8 C 0.01 0.66 4.99 84.93 0.42 1.09 16 9 N -0.90 -48.17 11.24 21.66 0.24 -47.92 16 10 Si 0.97 41.01 29.61 68.60 2.03 43.04 16 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 14 C 0.45 22.75 7.61 87.66 0.67 23.41 16 15 O -0.64 -34.81 15.31 -3.06 -0.05 -34.86 16 16 C -0.07 -2.74 3.61 29.85 0.11 -2.63 16 17 C -0.15 -5.18 5.31 -10.77 -0.06 -5.24 16 18 H 0.09 3.48 7.49 -2.39 -0.02 3.46 16 19 C -0.16 -4.74 9.90 30.62 0.30 -4.43 16 20 C -0.11 -2.89 5.85 -10.79 -0.06 -2.96 16 21 H 0.12 2.79 8.14 -2.38 -0.02 2.77 16 22 C -0.13 -3.27 5.12 -10.80 -0.06 -3.33 16 23 C -0.16 -3.34 10.25 30.60 0.31 -3.02 16 24 C -0.19 -5.01 8.66 30.60 0.27 -4.75 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 5.52 5.29 -2.39 -0.01 5.51 16 31 H 0.05 2.79 7.51 -2.39 -0.02 2.77 16 32 H 0.27 13.74 8.32 -92.70 -0.77 12.97 16 33 H 0.08 3.14 7.54 -2.39 -0.02 3.12 16 34 H 0.09 3.66 6.21 -2.39 -0.01 3.64 16 35 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.09 2.65 8.04 -2.39 -0.02 2.63 16 37 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.08 2.43 7.75 -2.39 -0.02 2.41 16 41 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -62.82 337.14 4.86 -57.96 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 1.00 Total: 31.98 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 4.75 Total: -7.03 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.36 Total: -72.47 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -1.56 Total: -53.48 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -62.82 4.86 -57.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712926929.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.838 kcal (2) G-P(sol) polarization free energy of solvation -62.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds