Wall clock time and date at job start Mon Mar 30 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99876 * 2 1 4 4 C 1.53005 * 109.47158 * 125.00013 * 3 2 1 5 5 H 1.08997 * 109.46934 * 304.99869 * 4 3 2 6 6 N 1.46900 * 109.47178 * 65.00229 * 4 3 2 7 7 C 1.46894 * 110.99918 * 205.00081 * 6 4 3 8 8 H 1.09000 * 110.81902 * 323.11348 * 7 6 4 9 9 C 1.54887 * 110.75889 * 86.45405 * 7 6 4 10 10 C 1.54266 * 104.19888 * 156.25489 * 9 7 6 11 11 C 1.53872 * 106.59640 * 336.38805 * 10 9 7 12 12 H 1.09002 * 110.03208 * 119.28196 * 11 10 9 13 13 C 1.50702 * 110.03107 * 240.71363 * 11 10 9 14 14 H 1.07992 * 119.99795 * 118.55175 * 13 11 10 15 15 C 1.37874 * 119.99956 * 298.54651 * 13 11 10 16 16 N 1.31517 * 119.99951 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99845 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47210 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46979 * 120.00348 * 17 15 13 20 20 H 1.48496 * 109.47022 * 239.99887 * 17 15 13 21 21 C 1.54266 * 106.60044 * 359.97438 * 11 10 9 22 22 C 1.50704 * 109.46902 * 184.99855 * 4 3 2 23 23 O 1.20821 * 119.99804 * 239.99803 * 22 4 3 24 24 O 1.34227 * 119.99923 * 60.00279 * 22 4 3 25 25 C 1.45201 * 117.00128 * 179.97438 * 24 22 4 26 26 H 1.08008 * 119.99990 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00604 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00099 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47251 * 5.00231 * 3 2 1 30 30 H 1.09003 * 109.47293 * 245.00220 * 3 2 1 31 31 H 1.00903 * 110.99673 * 328.95020 * 6 4 3 32 32 H 1.09001 * 110.48816 * 37.57415 * 9 7 6 33 33 H 1.09004 * 110.48531 * 274.93631 * 9 7 6 34 34 H 1.09003 * 110.03179 * 95.67576 * 10 9 7 35 35 H 1.09003 * 110.02980 * 217.05505 * 10 9 7 36 36 H 0.97004 * 119.99285 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.48438 * 142.28717 * 21 11 10 38 38 H 1.09001 * 110.48592 * 264.92893 * 21 11 10 39 39 H 1.08999 * 109.46956 * 300.00057 * 25 24 22 40 40 H 1.09006 * 109.46811 * 59.99971 * 25 24 22 41 41 H 1.08996 * 109.47138 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4883 1.1469 2.1060 6 7 4.0575 0.2942 0.9997 7 6 4.6207 -0.1220 2.2909 8 1 4.7119 0.7288 2.9661 9 6 3.7606 -1.2403 2.9302 10 6 4.7334 -1.9699 3.8795 11 6 6.1518 -1.6999 3.3477 12 1 6.7397 -1.1760 4.1013 13 6 6.8216 -2.9992 2.9810 14 1 7.1299 -3.1788 1.9617 15 6 7.0409 -3.9583 3.9468 16 7 6.6651 -3.7396 5.1880 17 14 7.8718 -5.5685 3.4923 18 1 8.1949 -5.5670 2.0429 19 1 9.1231 -5.7187 4.2779 20 1 6.9585 -6.6995 3.7952 21 6 5.9915 -0.8162 2.0934 22 6 3.6990 2.6841 1.2541 23 8 4.9006 2.7722 1.1635 24 8 2.9555 3.7893 1.4194 25 6 3.6623 5.0562 1.4809 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5401 0.9352 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 3.6838 -0.4966 0.4964 32 1 3.3913 -1.9225 2.1644 33 1 2.9310 -0.8100 3.4911 34 1 4.6328 -1.5771 4.8912 35 1 4.5288 -3.0406 3.8729 36 1 6.8198 -4.4144 5.8675 37 1 6.7899 -0.0758 2.0438 38 1 5.9827 -1.4301 1.1928 39 1 4.3584 5.0434 2.3195 40 1 4.2136 5.2101 0.5533 41 1 2.9453 5.8660 1.6157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905769338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:43 Heat of formation + Delta-G solvation = -77.210135 kcal Electronic energy + Delta-G solvation = -20836.682832 eV Core-core repulsion = 17716.631069 eV Total energy + Delta-G solvation = -3120.051762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47726 -38.12920 -36.37010 -35.97526 -33.45461 -31.97861 -29.55616 -27.98069 -27.65942 -25.90523 -24.35252 -23.43696 -20.60618 -19.92575 -19.72161 -18.82157 -17.52252 -16.58868 -16.51942 -16.00234 -15.48034 -15.38995 -14.61552 -14.22388 -14.06908 -13.77903 -13.26049 -13.17745 -12.53457 -12.38702 -12.26344 -11.97160 -11.91037 -11.38930 -11.29646 -11.12272 -10.96165 -10.77400 -10.60977 -10.43405 -10.22368 -10.14722 -9.80836 -9.56674 -9.50637 -9.10377 -8.62176 -8.32360 -8.06439 -5.94903 -3.97316 2.05291 2.38484 2.67242 3.32784 3.40969 3.45337 4.31221 4.49997 4.62099 4.76780 4.96742 5.01650 5.03315 5.10373 5.17868 5.36634 5.43523 5.49326 5.60259 5.63500 5.74351 5.82983 5.92764 6.22182 6.38780 6.46526 6.51144 6.56052 6.65661 6.79257 6.89198 7.07203 7.15348 7.40570 7.46918 7.62509 7.79435 7.93150 7.99686 8.07220 8.55429 9.06880 9.66249 11.14415 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.004534 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.975597 B = 6174.723096 C = 6875.340664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.091 4.091 4 C 0.105 3.895 5 H 0.083 0.917 6 N -0.663 5.663 7 C 0.083 3.917 8 H 0.072 0.928 9 C -0.153 4.153 10 C -0.087 4.087 11 C 0.042 3.958 12 H 0.025 0.975 13 C -0.507 4.507 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.887 3.113 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.095 4.095 22 C 0.457 3.543 23 O -0.476 6.476 24 O -0.367 6.367 25 C 0.036 3.964 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.352 0.648 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.258 0.742 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.659 12.636 -8.351 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.175 4.175 3 C -0.128 4.128 4 C -0.007 4.007 5 H 0.101 0.899 6 N -0.297 5.297 7 C -0.026 4.026 8 H 0.090 0.910 9 C -0.193 4.193 10 C -0.126 4.126 11 C 0.023 3.977 12 H 0.043 0.957 13 C -0.546 4.546 14 H 0.074 0.926 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.134 4.134 22 C 0.297 3.703 23 O -0.360 6.360 24 O -0.285 6.285 25 C -0.058 4.058 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.175 0.825 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.759 13.062 -8.349 19.457 hybrid contribution -0.110 -1.334 0.353 1.384 sum -11.869 11.728 -7.996 18.503 Atomic orbital electron populations 1.23868 0.95784 1.01988 1.00640 1.22903 0.96169 0.98138 1.00281 1.20868 0.97318 0.96810 0.97841 1.20947 0.91592 0.87938 1.00253 0.89918 1.60157 1.33784 1.13863 1.21899 1.22747 0.96386 0.96000 0.87446 0.91020 1.23123 0.98213 0.97890 1.00028 1.21964 0.95493 0.99681 0.95426 1.19273 0.92702 0.94068 0.91637 0.95675 1.21315 1.37995 1.00366 0.94901 0.92619 1.24990 0.95779 0.98382 0.95054 1.70006 1.47475 1.34449 1.01059 0.86614 0.79278 0.83997 0.78584 1.19790 1.21143 1.21189 1.22391 0.93145 0.97410 1.00413 1.23915 0.86718 0.86452 0.73227 1.90682 1.15647 1.86622 1.43024 1.86485 1.42101 1.16004 1.83872 1.23199 0.97872 0.82228 1.02470 0.88262 0.88485 0.86821 0.89667 0.89513 0.82500 0.92579 0.93953 0.94519 0.91776 0.93273 0.93348 0.92232 0.92002 0.92068 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 14.32 29.02 0.42 -1.18 16 2 C -0.16 -1.52 9.01 -36.02 -0.32 -1.84 16 3 C -0.09 -0.92 5.22 -27.88 -0.15 -1.07 16 4 C 0.10 1.37 2.43 -68.86 -0.17 1.20 16 5 H 0.08 1.07 7.75 -51.93 -0.40 0.66 16 6 N -0.66 -10.25 5.70 -98.86 -0.56 -10.81 16 7 C 0.08 1.53 2.79 -65.71 -0.18 1.35 16 8 H 0.07 1.39 7.76 -51.93 -0.40 0.98 16 9 C -0.15 -2.84 6.27 -25.07 -0.16 -3.00 16 10 C -0.09 -2.04 5.55 -25.61 -0.14 -2.18 16 11 C 0.04 1.07 2.84 -90.65 -0.26 0.81 16 12 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.51 -14.10 8.34 -34.44 -0.29 -14.39 16 14 H 0.06 1.54 7.55 -52.49 -0.40 1.14 16 15 C 0.06 1.65 5.07 -17.82 -0.09 1.56 16 16 N -0.89 -25.94 12.33 55.43 0.68 -25.26 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.10 -2.08 6.03 -25.06 -0.15 -2.23 16 22 C 0.46 6.70 7.04 36.01 0.25 6.96 16 23 O -0.48 -8.65 16.01 -18.75 -0.30 -8.95 16 24 O -0.37 -4.51 10.37 -39.25 -0.41 -4.92 16 25 C 0.04 0.34 10.56 101.05 1.07 1.41 16 26 H 0.10 0.78 8.06 -52.48 -0.42 0.35 16 27 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 28 H 0.11 1.13 6.94 -52.49 -0.36 0.76 16 29 H 0.08 0.76 7.65 -51.93 -0.40 0.37 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.35 4.95 6.32 -39.29 -0.25 4.70 16 32 H 0.06 0.98 7.81 -51.93 -0.41 0.58 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.66 7.17 -51.93 -0.37 1.28 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.30 7.68 -51.93 -0.40 0.90 16 39 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 40 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 336.71 15.07 5.07 5.07 Total: -1.00 -31.09 336.71 -7.44 -38.53 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.74 Total: 2.41 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.17 Total: -12.59 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.12 Total: -36.07 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.71 Total: -13.87 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.09 -7.44 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905769338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.677 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds