Wall clock time and date at job start Mon Mar 30 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99876 * 2 1 4 4 C 1.53005 * 109.47158 * 125.00013 * 3 2 1 5 5 H 1.08997 * 109.46934 * 304.99869 * 4 3 2 6 6 N 1.46900 * 109.47178 * 65.00229 * 4 3 2 7 7 C 1.46894 * 110.99918 * 205.00081 * 6 4 3 8 8 H 1.09000 * 110.81902 * 323.11348 * 7 6 4 9 9 C 1.54887 * 110.75889 * 86.45405 * 7 6 4 10 10 C 1.54266 * 104.19888 * 156.25489 * 9 7 6 11 11 C 1.53872 * 106.59640 * 336.38805 * 10 9 7 12 12 H 1.09002 * 110.03208 * 119.28196 * 11 10 9 13 13 C 1.50702 * 110.03107 * 240.71363 * 11 10 9 14 14 H 1.07992 * 119.99795 * 118.55175 * 13 11 10 15 15 C 1.37874 * 119.99956 * 298.54651 * 13 11 10 16 16 N 1.31517 * 119.99951 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99845 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47210 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46979 * 120.00348 * 17 15 13 20 20 H 1.48496 * 109.47022 * 239.99887 * 17 15 13 21 21 C 1.54266 * 106.60044 * 359.97438 * 11 10 9 22 22 C 1.50704 * 109.46902 * 184.99855 * 4 3 2 23 23 O 1.20821 * 119.99804 * 239.99803 * 22 4 3 24 24 O 1.34227 * 119.99923 * 60.00279 * 22 4 3 25 25 C 1.45201 * 117.00128 * 179.97438 * 24 22 4 26 26 H 1.08008 * 119.99990 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00604 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00099 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47251 * 5.00231 * 3 2 1 30 30 H 1.09003 * 109.47293 * 245.00220 * 3 2 1 31 31 H 1.00903 * 110.99673 * 328.95020 * 6 4 3 32 32 H 1.09001 * 110.48816 * 37.57415 * 9 7 6 33 33 H 1.09004 * 110.48531 * 274.93631 * 9 7 6 34 34 H 1.09003 * 110.03179 * 95.67576 * 10 9 7 35 35 H 1.09003 * 110.02980 * 217.05505 * 10 9 7 36 36 H 0.97004 * 119.99285 * 180.02562 * 16 15 13 37 37 H 1.09002 * 110.48438 * 142.28717 * 21 11 10 38 38 H 1.09001 * 110.48592 * 264.92893 * 21 11 10 39 39 H 1.08999 * 109.46956 * 300.00057 * 25 24 22 40 40 H 1.09006 * 109.46811 * 59.99971 * 25 24 22 41 41 H 1.08996 * 109.47138 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4883 1.1469 2.1060 6 7 4.0575 0.2942 0.9997 7 6 4.6207 -0.1220 2.2909 8 1 4.7119 0.7288 2.9661 9 6 3.7606 -1.2403 2.9302 10 6 4.7334 -1.9699 3.8795 11 6 6.1518 -1.6999 3.3477 12 1 6.7397 -1.1760 4.1013 13 6 6.8216 -2.9992 2.9810 14 1 7.1299 -3.1788 1.9617 15 6 7.0409 -3.9583 3.9468 16 7 6.6651 -3.7396 5.1880 17 14 7.8718 -5.5685 3.4923 18 1 8.1949 -5.5670 2.0429 19 1 9.1231 -5.7187 4.2779 20 1 6.9585 -6.6995 3.7952 21 6 5.9915 -0.8162 2.0934 22 6 3.6990 2.6841 1.2541 23 8 4.9006 2.7722 1.1635 24 8 2.9555 3.7893 1.4194 25 6 3.6623 5.0562 1.4809 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5401 0.9352 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 3.6838 -0.4966 0.4964 32 1 3.3913 -1.9225 2.1644 33 1 2.9310 -0.8100 3.4911 34 1 4.6328 -1.5771 4.8912 35 1 4.5288 -3.0406 3.8729 36 1 6.8198 -4.4144 5.8675 37 1 6.7899 -0.0758 2.0438 38 1 5.9827 -1.4301 1.1928 39 1 4.3584 5.0434 2.3195 40 1 4.2136 5.2101 0.5533 41 1 2.9453 5.8660 1.6157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905769338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:42 Heat of formation + Delta-G solvation = -95.904122 kcal Electronic energy + Delta-G solvation = -20837.493464 eV Core-core repulsion = 17716.631069 eV Total energy + Delta-G solvation = -3120.862394 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58158 -39.57158 -37.61598 -37.08383 -34.94134 -33.60411 -30.81394 -29.77103 -28.58957 -27.50311 -25.51026 -25.14710 -21.65417 -21.40604 -20.82566 -20.46542 -18.61715 -18.32835 -17.61776 -17.30533 -16.76617 -16.64548 -16.35295 -15.59515 -15.51488 -14.73132 -14.38349 -14.19342 -14.17782 -13.96592 -13.48968 -13.13652 -13.02940 -12.98872 -12.85440 -12.52834 -12.39314 -12.25521 -12.05746 -11.86616 -11.74745 -11.62451 -11.45465 -11.32644 -11.00303 -10.71367 -10.45639 -10.21797 -9.37217 -8.10925 -6.20827 1.18633 1.39912 1.41795 1.44897 1.53633 1.71929 2.44117 3.12182 3.19970 3.74263 3.86761 3.94218 4.03479 4.12918 4.24784 4.25507 4.34217 4.34842 4.38586 4.62048 4.72024 4.77470 4.85001 4.97017 5.00624 5.04508 5.09959 5.15497 5.23084 5.37248 5.41773 5.47222 5.67583 5.79607 5.85210 5.92760 5.95745 6.06017 6.39918 6.45475 6.84642 6.91246 7.46482 8.98161 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023251 B = 0.004534 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.975597 B = 6174.723096 C = 6875.340664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.174 4.174 3 C -0.079 4.079 4 C 0.105 3.895 5 H 0.093 0.907 6 N -0.667 5.667 7 C 0.102 3.898 8 H 0.062 0.938 9 C -0.136 4.136 10 C -0.079 4.079 11 C 0.034 3.966 12 H -0.014 1.014 13 C -0.526 4.526 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.954 3.046 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.278 1.278 21 C -0.088 4.088 22 C 0.458 3.542 23 O -0.520 6.520 24 O -0.362 6.362 25 C 0.029 3.971 26 H 0.106 0.894 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.362 0.638 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.036 0.964 36 H 0.259 0.741 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.691 12.952 -9.631 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.192 4.192 3 C -0.117 4.117 4 C -0.007 4.007 5 H 0.110 0.890 6 N -0.302 5.302 7 C -0.008 4.008 8 H 0.080 0.920 9 C -0.176 4.176 10 C -0.118 4.118 11 C 0.015 3.985 12 H 0.004 0.996 13 C -0.565 4.565 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.204 1.204 21 C -0.127 4.127 22 C 0.300 3.700 23 O -0.407 6.407 24 O -0.278 6.278 25 C -0.065 4.065 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.186 0.814 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.822 13.393 -9.647 21.528 hybrid contribution 0.504 -1.338 0.768 1.623 sum -13.317 12.055 -8.879 20.038 Atomic orbital electron populations 1.24070 0.95443 1.03034 0.98469 1.22843 0.96581 0.97594 1.02232 1.20806 0.96781 0.97892 0.96191 1.21075 0.91192 0.86254 1.02152 0.88966 1.59961 1.35459 1.14766 1.20032 1.22353 0.94477 0.95213 0.88744 0.91964 1.22984 0.97618 0.97583 0.99380 1.21741 0.95763 0.98421 0.95880 1.19271 0.93244 0.93656 0.92326 0.99574 1.21634 1.38407 1.01517 0.94893 0.92904 1.25769 0.96356 1.01787 0.94929 1.70129 1.48390 1.35581 1.01976 0.85572 0.78187 0.79799 0.78516 1.19056 1.20893 1.20408 1.22212 0.95249 0.96724 0.98472 1.24260 0.86226 0.87524 0.71973 1.90672 1.17453 1.87318 1.45294 1.86475 1.41848 1.16384 1.83137 1.23506 0.98947 0.81828 1.02171 0.87534 0.87168 0.87287 0.87961 0.89762 0.81365 0.90997 0.91339 0.96074 0.94534 0.93182 0.94570 0.92272 0.92836 0.92114 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 14.32 67.78 0.97 -1.41 16 2 C -0.17 -2.86 9.01 25.65 0.23 -2.63 16 3 C -0.08 -1.39 5.22 29.85 0.16 -1.24 16 4 C 0.10 2.53 2.43 44.17 0.11 2.63 16 5 H 0.09 2.11 7.75 -2.39 -0.02 2.09 16 6 N -0.67 -19.72 5.70 -466.67 -2.66 -22.38 16 7 C 0.10 3.70 2.79 46.22 0.13 3.83 16 8 H 0.06 2.40 7.76 -2.39 -0.02 2.38 16 9 C -0.14 -4.88 6.27 31.67 0.20 -4.68 16 10 C -0.08 -3.79 5.55 31.32 0.17 -3.62 16 11 C 0.03 1.79 2.84 -10.82 -0.03 1.76 16 12 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 13 C -0.53 -29.96 8.34 25.60 0.21 -29.75 16 14 H 0.05 2.96 7.55 -2.91 -0.02 2.94 16 15 C 0.01 0.56 5.07 84.65 0.43 0.99 16 16 N -0.92 -54.93 12.33 21.45 0.26 -54.66 16 17 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C -0.09 -3.93 6.03 31.68 0.19 -3.73 16 22 C 0.46 12.85 7.04 71.24 0.50 13.35 16 23 O -0.52 -18.83 16.01 21.98 0.35 -18.48 16 24 O -0.36 -8.15 10.37 -51.39 -0.53 -8.68 16 25 C 0.03 0.49 10.56 113.37 1.20 1.69 16 26 H 0.11 1.32 8.06 -2.91 -0.02 1.29 16 27 H 0.11 1.22 7.84 -2.91 -0.02 1.20 16 28 H 0.11 1.89 6.94 -2.91 -0.02 1.87 16 29 H 0.10 1.47 7.65 -2.39 -0.02 1.45 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.36 9.48 6.32 -89.69 -0.57 8.91 16 32 H 0.07 2.37 7.81 -2.39 -0.02 2.35 16 33 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 34 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.04 1.92 7.17 -2.39 -0.02 1.90 16 36 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 2.60 7.68 -2.39 -0.02 2.59 16 39 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 40 H 0.06 1.06 8.13 -2.38 -0.02 1.04 16 41 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -68.80 336.71 4.35 -64.45 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.43 Total: 15.93 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.47 Total: -22.80 kcal Atomic # 7 Polarization: -74.64 SS G_CDS: -2.39 Total: -77.04 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.18 Total: -27.16 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.80 4.35 -64.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905769338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.455 kcal (2) G-P(sol) polarization free energy of solvation -68.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds