Wall clock time and date at job start Mon Mar 30 2020 04:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46774 * 2 1 4 4 C 1.42905 * 113.99794 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.56047 * 4.31642 * 4 3 2 6 6 C 1.53004 * 117.50082 * 218.62463 * 4 3 2 7 7 H 1.08990 * 117.52037 * 145.02988 * 6 4 3 8 8 C 1.53005 * 117.49551 * 359.97438 * 6 4 3 9 9 C 1.53000 * 59.99963 * 252.51208 * 6 4 3 10 10 H 1.08998 * 117.49965 * 107.51074 * 9 6 4 11 11 C 1.50695 * 117.49678 * 252.51097 * 9 6 4 12 12 O 1.21279 * 120.00214 * 5.25356 * 11 9 6 13 13 N 1.34781 * 119.99960 * 185.25878 * 11 9 6 14 14 C 1.46497 * 119.99941 * 185.02301 * 13 11 9 15 15 C 1.53007 * 109.47047 * 184.90812 * 14 13 11 16 16 C 1.50698 * 115.55819 * 330.22104 * 15 14 13 17 17 H 1.07997 * 120.00056 * 118.74587 * 16 15 14 18 18 C 1.37879 * 119.99951 * 298.73599 * 16 15 14 19 19 N 1.31519 * 119.99680 * 184.69381 * 18 16 15 20 20 Si 1.86795 * 120.00236 * 4.69445 * 18 16 15 21 21 H 1.48495 * 109.47355 * 84.85396 * 20 18 16 22 22 H 1.48501 * 109.47091 * 204.85204 * 20 18 16 23 23 H 1.48501 * 109.47156 * 324.85113 * 20 18 16 24 24 C 1.53001 * 117.49493 * 184.53548 * 15 14 13 25 25 C 1.53006 * 60.03112 * 252.52082 * 24 15 14 26 26 H 1.09000 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46831 * 299.99633 * 1 2 3 28 28 H 1.08999 * 109.47312 * 59.99513 * 1 2 3 29 29 H 1.09004 * 109.46831 * 240.00367 * 2 1 3 30 30 H 1.08999 * 109.47312 * 120.00487 * 2 1 3 31 31 H 1.08999 * 109.47143 * 351.38597 * 8 6 4 32 32 H 1.09003 * 109.46915 * 111.37697 * 8 6 4 33 33 H 1.08994 * 109.47389 * 231.37716 * 8 6 4 34 34 H 0.96999 * 120.00274 * 5.01331 * 13 11 9 35 35 H 1.08998 * 109.47374 * 64.90691 * 14 13 11 36 36 H 1.09004 * 109.47071 * 304.90274 * 14 13 11 37 37 H 0.97000 * 119.99752 * 179.97438 * 19 18 16 38 38 H 1.09003 * 117.49468 * 145.02458 * 24 15 14 39 39 H 1.08993 * 117.50417 * 0.02562 * 24 15 14 40 40 H 1.08991 * 117.49571 * 107.48154 * 25 24 15 41 41 H 1.09003 * 117.49583 * 252.48524 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9771 0.5198 -0.0750 6 6 4.0518 2.5728 0.8465 7 1 5.0065 2.3649 1.3294 8 6 3.0998 3.4798 1.6289 9 6 4.0420 2.6878 -0.6792 10 1 3.3577 3.4095 -1.1251 11 6 5.3530 2.5043 -1.3992 12 8 6.3447 2.1812 -0.7803 13 7 5.4235 2.6994 -2.7309 14 6 6.6690 2.4150 -3.4479 15 6 6.5214 2.8333 -4.9123 16 6 5.1255 2.7515 -5.4743 17 1 4.6366 3.6433 -5.8376 18 6 4.4727 1.5382 -5.5247 19 7 3.2926 1.4498 -6.0986 20 14 5.2642 0.0199 -4.7780 21 1 4.9591 -0.0340 -3.3257 22 1 4.7278 -1.1953 -5.4419 23 1 6.7351 0.0819 -4.9728 24 6 7.6830 2.5192 -5.8572 25 6 7.4229 3.9619 -5.4191 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0723 3.2715 1.3307 32 1 3.2135 3.2912 2.6964 33 1 3.3354 4.5227 1.4171 34 1 4.6496 3.0279 -3.2147 35 1 6.8833 1.3476 -3.3948 36 1 7.4866 2.9730 -2.9914 37 1 2.8335 0.5961 -6.1344 38 1 7.4376 2.2535 -6.8854 39 1 8.5522 2.0141 -5.4358 40 1 8.1207 4.4058 -4.7092 41 1 7.0066 4.6453 -6.1593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907936424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:16 Heat of formation + Delta-G solvation = -38.221460 kcal Electronic energy + Delta-G solvation = -20961.042459 eV Core-core repulsion = 17842.681373 eV Total energy + Delta-G solvation = -3118.361087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76478 -38.20144 -36.99977 -35.35563 -33.34600 -32.28621 -30.89434 -28.73888 -26.86408 -25.41979 -23.02979 -22.70883 -21.55688 -20.58514 -19.55414 -19.06882 -17.33038 -16.65474 -16.03928 -15.62173 -15.47612 -15.10896 -14.73772 -14.06977 -13.86818 -13.39564 -13.09332 -12.91186 -12.80187 -12.52052 -12.43499 -12.33643 -12.18511 -12.13342 -11.54005 -11.13111 -11.12279 -10.77717 -10.76724 -10.52501 -10.19514 -10.01620 -9.72793 -9.50769 -9.21129 -8.93727 -8.82226 -8.64679 -8.15378 -6.27676 -4.31241 2.85146 3.23290 3.31101 3.36306 3.38640 3.94328 4.07204 4.29938 4.77237 4.87209 4.90572 5.01802 5.04732 5.10843 5.25750 5.34800 5.42416 5.46874 5.57577 5.69681 5.71046 5.85171 5.87634 5.90567 5.93000 6.05778 6.10126 6.12635 6.27584 6.44432 6.45919 6.52544 6.62638 6.83462 7.08869 7.20997 7.23618 7.60894 8.30187 8.35909 8.75874 8.87660 9.34509 10.82148 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.006521 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.195686 B = 4292.736512 C = 5232.559265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.350 6.350 4 C 0.051 3.949 5 H 0.112 0.888 6 C -0.126 4.126 7 H 0.120 0.880 8 C -0.120 4.120 9 C -0.185 4.185 10 H 0.129 0.871 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.692 5.692 14 C 0.145 3.855 15 C -0.017 4.017 16 C -0.494 4.494 17 H 0.081 0.919 18 C 0.087 3.913 19 N -0.886 5.886 20 Si 0.874 3.126 21 H -0.274 1.274 22 H -0.295 1.295 23 H -0.258 1.258 24 C -0.191 4.191 25 C -0.179 4.179 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.417 0.583 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -0.705 11.753 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.268 6.268 4 C -0.008 4.008 5 H 0.130 0.870 6 C -0.145 4.145 7 H 0.138 0.862 8 C -0.177 4.177 9 C -0.206 4.206 10 H 0.147 0.853 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.345 5.345 14 C 0.021 3.979 15 C -0.018 4.018 16 C -0.531 4.531 17 H 0.099 0.901 18 C -0.118 4.118 19 N -0.522 5.522 20 Si 0.702 3.298 21 H -0.200 1.200 22 H -0.223 1.223 23 H -0.183 1.183 24 C -0.230 4.230 25 C -0.216 4.216 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.258 0.742 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.922 -0.906 12.079 12.265 hybrid contribution 0.192 -0.993 -0.155 1.024 sum -1.730 -1.899 11.925 12.198 Atomic orbital electron populations 1.21741 0.93515 1.02281 1.03215 1.22565 0.95603 0.83494 1.00398 1.87795 1.18416 1.26734 1.93878 1.22631 0.81985 0.93748 1.02466 0.87020 1.22866 1.01038 0.99691 0.90877 0.86232 1.21242 0.99227 0.98330 0.98915 1.22817 0.97900 1.03766 0.96118 0.85342 1.19539 0.88582 0.77316 0.82625 1.90610 1.37216 1.49649 1.67163 1.46180 1.16748 1.64944 1.06596 1.21007 0.85511 0.99014 0.92319 1.19593 0.93078 0.99374 0.89732 1.20265 0.95783 0.95866 1.41169 0.90130 1.24923 0.94364 0.98536 0.93968 1.69893 1.14102 1.26131 1.42034 0.87023 0.80867 0.82322 0.79583 1.19984 1.22250 1.18266 1.23057 1.00684 0.98131 1.01088 1.22857 1.03570 0.91515 1.03701 0.91069 0.91934 0.91522 0.92936 0.93221 0.91286 0.92206 0.92174 0.74224 0.93074 0.92447 0.92282 0.89310 0.91176 0.90799 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.06 0.69 6.53 37.16 0.24 0.93 16 3 O -0.35 -5.22 9.32 -35.23 -0.33 -5.55 16 4 C 0.05 0.79 6.11 -26.73 -0.16 0.63 16 5 H 0.11 1.76 7.93 -51.93 -0.41 1.34 16 6 C -0.13 -1.81 5.92 -90.61 -0.54 -2.35 16 7 H 0.12 1.77 7.68 -51.93 -0.40 1.37 16 8 C -0.12 -1.42 10.14 37.16 0.38 -1.04 16 9 C -0.18 -3.10 5.86 -91.77 -0.54 -3.64 16 10 H 0.13 2.05 8.14 -51.93 -0.42 1.63 16 11 C 0.53 10.75 7.60 -10.99 -0.08 10.67 16 12 O -0.57 -12.61 16.25 5.56 0.09 -12.52 16 13 N -0.69 -14.60 4.68 -60.29 -0.28 -14.89 16 14 C 0.15 3.16 4.68 -4.04 -0.02 3.14 16 15 C -0.02 -0.37 1.31 -155.62 -0.20 -0.57 16 16 C -0.49 -12.68 7.69 -34.44 -0.27 -12.95 16 17 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 18 C 0.09 2.32 5.32 -17.82 -0.09 2.22 16 19 N -0.89 -25.17 13.96 55.43 0.77 -24.40 16 20 Si 0.87 21.20 24.17 -169.99 -4.11 17.10 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.26 -6.10 6.21 56.52 0.35 -5.75 16 24 C -0.19 -3.94 9.25 -26.73 -0.25 -4.19 16 25 C -0.18 -3.52 9.89 -26.69 -0.26 -3.78 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.85 6.94 -51.93 -0.36 0.49 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.42 8.95 6.89 -40.82 -0.28 8.67 16 35 H 0.05 1.17 5.28 -51.93 -0.27 0.90 16 36 H 0.06 1.19 7.84 -51.93 -0.41 0.78 16 37 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 41 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -29.29 335.88 -7.02 -36.30 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -6.81 Total: 10.98 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.41 Total: -12.09 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.49 Total: -39.28 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.24 Total: -18.07 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.11 Total: 17.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.29 -7.02 -36.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907936424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.917 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds