Wall clock time and date at job start Mon Mar 30 2020 04:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46774 * 2 1 4 4 C 1.42905 * 113.99794 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.56047 * 4.31642 * 4 3 2 6 6 C 1.53004 * 117.50082 * 218.62463 * 4 3 2 7 7 H 1.08990 * 117.52037 * 145.02988 * 6 4 3 8 8 C 1.53005 * 117.49551 * 359.97438 * 6 4 3 9 9 C 1.53000 * 59.99963 * 252.51208 * 6 4 3 10 10 H 1.08998 * 117.49965 * 107.51074 * 9 6 4 11 11 C 1.50695 * 117.49678 * 252.51097 * 9 6 4 12 12 O 1.21279 * 120.00214 * 5.25356 * 11 9 6 13 13 N 1.34781 * 119.99960 * 185.25878 * 11 9 6 14 14 C 1.46497 * 119.99941 * 185.02301 * 13 11 9 15 15 C 1.53007 * 109.47047 * 184.90812 * 14 13 11 16 16 C 1.50698 * 115.55819 * 330.22104 * 15 14 13 17 17 H 1.07997 * 120.00056 * 118.74587 * 16 15 14 18 18 C 1.37879 * 119.99951 * 298.73599 * 16 15 14 19 19 N 1.31519 * 119.99680 * 184.69381 * 18 16 15 20 20 Si 1.86795 * 120.00236 * 4.69445 * 18 16 15 21 21 H 1.48495 * 109.47355 * 84.85396 * 20 18 16 22 22 H 1.48501 * 109.47091 * 204.85204 * 20 18 16 23 23 H 1.48501 * 109.47156 * 324.85113 * 20 18 16 24 24 C 1.53001 * 117.49493 * 184.53548 * 15 14 13 25 25 C 1.53006 * 60.03112 * 252.52082 * 24 15 14 26 26 H 1.09000 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46831 * 299.99633 * 1 2 3 28 28 H 1.08999 * 109.47312 * 59.99513 * 1 2 3 29 29 H 1.09004 * 109.46831 * 240.00367 * 2 1 3 30 30 H 1.08999 * 109.47312 * 120.00487 * 2 1 3 31 31 H 1.08999 * 109.47143 * 351.38597 * 8 6 4 32 32 H 1.09003 * 109.46915 * 111.37697 * 8 6 4 33 33 H 1.08994 * 109.47389 * 231.37716 * 8 6 4 34 34 H 0.96999 * 120.00274 * 5.01331 * 13 11 9 35 35 H 1.08998 * 109.47374 * 64.90691 * 14 13 11 36 36 H 1.09004 * 109.47071 * 304.90274 * 14 13 11 37 37 H 0.97000 * 119.99752 * 179.97438 * 19 18 16 38 38 H 1.09003 * 117.49468 * 145.02458 * 24 15 14 39 39 H 1.08993 * 117.50417 * 0.02562 * 24 15 14 40 40 H 1.08991 * 117.49571 * 107.48154 * 25 24 15 41 41 H 1.09003 * 117.49583 * 252.48524 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9771 0.5198 -0.0750 6 6 4.0518 2.5728 0.8465 7 1 5.0065 2.3649 1.3294 8 6 3.0998 3.4798 1.6289 9 6 4.0420 2.6878 -0.6792 10 1 3.3577 3.4095 -1.1251 11 6 5.3530 2.5043 -1.3992 12 8 6.3447 2.1812 -0.7803 13 7 5.4235 2.6994 -2.7309 14 6 6.6690 2.4150 -3.4479 15 6 6.5214 2.8333 -4.9123 16 6 5.1255 2.7515 -5.4743 17 1 4.6366 3.6433 -5.8376 18 6 4.4727 1.5382 -5.5247 19 7 3.2926 1.4498 -6.0986 20 14 5.2642 0.0199 -4.7780 21 1 4.9591 -0.0340 -3.3257 22 1 4.7278 -1.1953 -5.4419 23 1 6.7351 0.0819 -4.9728 24 6 7.6830 2.5192 -5.8572 25 6 7.4229 3.9619 -5.4191 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0723 3.2715 1.3307 32 1 3.2135 3.2912 2.6964 33 1 3.3354 4.5227 1.4171 34 1 4.6496 3.0279 -3.2147 35 1 6.8833 1.3476 -3.3948 36 1 7.4866 2.9730 -2.9914 37 1 2.8335 0.5961 -6.1344 38 1 7.4376 2.2535 -6.8854 39 1 8.5522 2.0141 -5.4358 40 1 8.1207 4.4058 -4.7092 41 1 7.0066 4.6453 -6.1593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907936424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:15 Heat of formation + Delta-G solvation = -56.545405 kcal Electronic energy + Delta-G solvation = -20961.837045 eV Core-core repulsion = 17842.681373 eV Total energy + Delta-G solvation = -3119.155672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22289 -39.57509 -38.61982 -36.55818 -35.01155 -34.34056 -31.82623 -29.92050 -28.49449 -27.31077 -24.29054 -23.79673 -23.17804 -21.77465 -21.23495 -20.71834 -18.86627 -18.27865 -17.44909 -17.16271 -16.82461 -16.63293 -16.20517 -15.73098 -15.28945 -14.93626 -14.79980 -14.19857 -14.11368 -14.09207 -13.90877 -13.40483 -13.34851 -13.12063 -13.06432 -12.69387 -12.58914 -12.15616 -12.13667 -12.05204 -11.79229 -11.55325 -11.29479 -11.14621 -10.90072 -10.78352 -10.45549 -10.18165 -9.84692 -8.36590 -6.40692 1.25950 1.32431 1.37829 1.41410 2.09554 2.27889 2.56909 2.77833 2.93870 3.26539 3.62718 3.67857 3.90785 3.98469 4.03204 4.12139 4.26076 4.29028 4.35927 4.40959 4.43055 4.45214 4.56161 4.74399 4.79882 4.85043 4.90146 4.94402 4.96227 4.98761 5.12869 5.18764 5.23456 5.43823 5.48878 5.54471 5.67732 6.10618 6.27006 6.61045 6.73862 7.23007 7.27132 8.76820 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.006521 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.195686 B = 4292.736512 C = 5232.559265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.046 3.954 3 O -0.359 6.359 4 C 0.050 3.950 5 H 0.107 0.893 6 C -0.104 4.104 7 H 0.118 0.882 8 C -0.115 4.115 9 C -0.204 4.204 10 H 0.133 0.867 11 C 0.533 3.467 12 O -0.588 6.588 13 N -0.699 5.699 14 C 0.150 3.850 15 C -0.045 4.045 16 C -0.481 4.481 17 H 0.048 0.952 18 C 0.050 3.950 19 N -0.929 5.929 20 Si 0.920 3.080 21 H -0.278 1.278 22 H -0.301 1.301 23 H -0.245 1.245 24 C -0.186 4.186 25 C -0.159 4.159 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.414 0.586 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 -0.715 13.354 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.030 4.030 3 O -0.278 6.278 4 C -0.009 4.009 5 H 0.125 0.875 6 C -0.123 4.123 7 H 0.136 0.864 8 C -0.172 4.172 9 C -0.225 4.225 10 H 0.151 0.849 11 C 0.320 3.680 12 O -0.471 6.471 13 N -0.350 5.350 14 C 0.026 3.974 15 C -0.046 4.046 16 C -0.519 4.519 17 H 0.066 0.934 18 C -0.151 4.151 19 N -0.567 5.567 20 Si 0.747 3.253 21 H -0.204 1.204 22 H -0.228 1.228 23 H -0.169 1.169 24 C -0.224 4.224 25 C -0.196 4.196 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.253 0.747 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.137 -0.907 13.683 13.761 hybrid contribution -0.054 -0.937 -0.669 1.152 sum -1.191 -1.843 13.014 13.198 Atomic orbital electron populations 1.21755 0.91837 1.03694 1.03016 1.22815 0.97003 0.82449 1.00725 1.87789 1.17785 1.28339 1.93872 1.22631 0.82530 0.93353 1.02424 0.87532 1.22954 1.01229 0.98919 0.89247 0.86422 1.21264 0.98114 0.98095 0.99738 1.22829 0.96645 1.05265 0.97770 0.84895 1.20021 0.89476 0.76271 0.82189 1.90585 1.38338 1.50683 1.67444 1.46224 1.16477 1.65242 1.07105 1.20939 0.86213 0.98395 0.91820 1.19533 0.91861 1.02797 0.90367 1.20315 0.97330 0.94352 1.39874 0.93387 1.25418 0.94580 1.00651 0.94435 1.69990 1.15687 1.26663 1.44347 0.86291 0.80867 0.79659 0.78501 1.20359 1.22821 1.16852 1.23082 1.00068 0.99105 1.00118 1.22924 1.02291 0.90955 1.03385 0.88881 0.90975 0.92825 0.94231 0.91285 0.91701 0.90022 0.91355 0.74679 0.94284 0.91212 0.92373 0.90140 0.88965 0.88071 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 10.28 71.98 0.74 -2.03 16 2 C 0.05 1.09 6.53 71.98 0.47 1.56 16 3 O -0.36 -10.38 9.32 -148.98 -1.39 -11.77 16 4 C 0.05 1.51 6.11 30.60 0.19 1.70 16 5 H 0.11 3.30 7.93 -2.39 -0.02 3.29 16 6 C -0.10 -2.84 5.92 -10.79 -0.06 -2.91 16 7 H 0.12 3.29 7.68 -2.39 -0.02 3.27 16 8 C -0.12 -2.45 10.14 71.98 0.73 -1.72 16 9 C -0.20 -6.72 5.86 -11.54 -0.07 -6.79 16 10 H 0.13 4.21 8.14 -2.39 -0.02 4.19 16 11 C 0.53 21.19 7.60 87.65 0.67 21.86 16 12 O -0.59 -25.72 16.25 -3.03 -0.05 -25.77 16 13 N -0.70 -29.23 4.68 -463.06 -2.17 -31.39 16 14 C 0.15 6.32 4.68 86.38 0.40 6.73 16 15 C -0.04 -1.93 1.31 -52.90 -0.07 -2.00 16 16 C -0.48 -24.93 7.69 25.60 0.20 -24.73 16 17 H 0.05 2.76 8.06 -2.91 -0.02 2.73 16 18 C 0.05 2.68 5.32 84.65 0.45 3.13 16 19 N -0.93 -53.98 13.96 21.45 0.30 -53.68 16 20 Si 0.92 43.82 24.17 68.60 1.66 45.48 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 23 H -0.24 -11.03 6.21 99.48 0.62 -10.41 16 24 C -0.19 -7.21 9.25 30.60 0.28 -6.93 16 25 C -0.16 -5.84 9.89 30.62 0.30 -5.54 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.46 6.94 -2.39 -0.02 1.44 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.41 17.93 6.89 -92.71 -0.64 17.29 16 35 H 0.04 1.73 5.28 -2.39 -0.01 1.72 16 36 H 0.07 2.74 7.84 -2.39 -0.02 2.72 16 37 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 38 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.10 3.20 8.03 -2.39 -0.02 3.18 16 41 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -62.32 335.88 2.87 -59.45 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.28 Total: 35.33 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.23 Total: -17.65 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.87 Total: -85.08 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.44 Total: -37.53 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.66 Total: 45.48 kcal Total: -62.32 2.87 -59.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907936424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.906 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds