Wall clock time and date at job start Mon Mar 30 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00255 * 2 1 4 4 C 1.52994 * 109.47542 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47457 * 64.99904 * 4 3 2 6 6 C 1.46902 * 111.00309 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46830 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46895 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47290 * 179.97438 * 8 7 6 10 10 C 1.39875 * 126.03728 * 89.97551 * 9 8 7 11 11 N 1.30839 * 108.20184 * 180.02562 * 10 9 8 12 12 N 1.40085 * 108.20364 * 0.02562 * 11 10 9 13 13 C 1.46506 * 126.03688 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46726 * 304.99793 * 13 12 11 15 15 H 1.08005 * 120.00478 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99831 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99654 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00104 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47286 * 89.99594 * 18 16 14 20 20 H 1.48502 * 109.47386 * 209.99777 * 18 16 14 21 21 H 1.48502 * 109.46961 * 329.99747 * 18 16 14 22 22 C 1.34949 * 107.93019 * 359.97438 * 12 11 10 23 23 H 1.09003 * 109.46746 * 300.00012 * 1 2 3 24 24 H 1.09004 * 109.47242 * 59.99326 * 1 2 3 25 25 H 1.08993 * 109.47266 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47049 * 60.00071 * 3 2 1 27 27 H 1.09004 * 109.46950 * 300.00433 * 3 2 1 28 28 H 1.09011 * 109.46789 * 305.00323 * 4 3 2 29 29 H 1.08991 * 109.47595 * 185.00352 * 4 3 2 30 30 H 1.00892 * 111.00181 * 56.04489 * 5 4 3 31 31 H 1.08994 * 109.46936 * 60.00084 * 6 5 4 32 32 H 1.09001 * 109.46950 * 299.99686 * 6 5 4 33 33 H 1.08999 * 109.47176 * 59.99836 * 7 6 5 34 34 H 1.08996 * 109.47547 * 299.99842 * 7 6 5 35 35 H 1.08999 * 109.47185 * 60.00034 * 8 7 6 36 36 H 1.09001 * 109.47075 * 299.99841 * 8 7 6 37 37 H 1.08003 * 125.89835 * 359.76152 * 10 9 8 38 38 H 1.08998 * 109.47019 * 64.99789 * 13 12 11 39 39 H 1.09005 * 109.47133 * 184.99915 * 13 12 11 40 40 H 0.97001 * 119.99266 * 179.97438 * 17 16 14 41 41 H 1.07997 * 126.13040 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9770 0.5628 -1.2561 6 6 5.4395 0.4298 -1.2920 7 6 5.8602 -0.2210 -2.6112 8 6 7.3835 -0.3589 -2.6489 9 6 7.7979 -1.0005 -3.9480 10 6 8.1043 -0.3293 -5.1363 11 7 8.4179 -1.2215 -6.0405 12 7 8.3201 -2.4905 -5.4554 13 6 8.5865 -3.7688 -6.1198 14 6 7.7401 -3.8751 -7.3621 15 1 7.0710 -3.0708 -7.6302 16 6 7.8199 -4.9993 -8.1565 17 7 8.6351 -5.9784 -7.8303 18 14 6.7713 -5.1308 -9.6968 19 1 7.5146 -4.5655 -10.8514 20 1 6.4568 -6.5578 -9.9612 21 1 5.5088 -4.3735 -9.5022 22 6 7.9383 -2.3277 -4.1713 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1764 0.0890 30 1 3.6410 1.0809 -2.0540 31 1 5.7683 -0.1921 -0.4594 32 1 5.8961 1.4163 -1.2112 33 1 5.5313 0.4005 -3.4441 34 1 5.4036 -1.2075 -2.6916 35 1 7.7127 -0.9802 -1.8160 36 1 7.8397 0.6278 -2.5688 37 1 8.0815 0.7404 -5.2834 38 1 9.6404 -3.8239 -6.3923 39 1 8.3429 -4.5878 -5.4430 40 1 8.6909 -6.7694 -8.3890 41 1 7.7744 -3.1154 -3.4509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054680042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:54 Heat of formation + Delta-G solvation = 13.836394 kcal Electronic energy + Delta-G solvation = -19194.738166 eV Core-core repulsion = 16110.927228 eV Total energy + Delta-G solvation = -3083.810938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.31127 -38.33978 -36.60061 -34.12719 -33.23010 -31.37235 -30.19706 -28.42339 -27.07520 -26.23342 -24.27696 -23.03288 -22.20903 -21.25962 -20.00754 -19.29745 -17.01432 -16.50562 -16.29960 -15.97454 -15.70967 -15.22590 -14.58752 -14.44820 -14.22733 -14.03203 -13.55851 -13.22172 -12.78573 -12.60900 -12.40086 -12.16556 -11.92744 -11.86193 -11.60571 -11.42360 -11.24256 -11.01961 -10.88486 -10.72693 -10.49435 -10.20422 -9.90939 -9.81315 -9.50431 -8.65323 -8.51937 -8.43030 -7.50075 -6.22336 -4.27009 2.85456 3.26216 3.31671 3.36995 3.49580 3.54575 3.70670 4.02487 4.34289 4.74110 4.84738 5.01525 5.07090 5.10825 5.12763 5.15663 5.17685 5.29708 5.44638 5.46709 5.52371 5.58281 5.61525 5.77131 5.90701 5.93796 6.23057 6.24355 6.43061 6.54486 6.83376 6.85213 6.96782 6.98701 7.09149 7.25988 7.49444 7.73081 7.90838 8.09202 8.67708 8.83378 9.38618 10.86760 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.002997 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.363083 B = 9339.222414 C =10372.557262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.063 3.937 4 C 0.059 3.941 5 N -0.683 5.683 6 C 0.059 3.941 7 C -0.111 4.111 8 C -0.027 4.027 9 C -0.265 4.265 10 C 0.018 3.982 11 N -0.285 5.285 12 N -0.328 5.328 13 C 0.256 3.744 14 C -0.527 4.527 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.908 3.092 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.050 3.950 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.339 0.661 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.166 0.834 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.267 0.733 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.524 14.106 16.713 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.014 4.014 4 C -0.070 4.070 5 N -0.315 5.315 6 C -0.070 4.070 7 C -0.149 4.149 8 C -0.066 4.066 9 C -0.277 4.277 10 C -0.167 4.167 11 N -0.108 5.108 12 N -0.108 5.108 13 C 0.138 3.862 14 C -0.566 4.566 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.736 3.264 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.100 4.100 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.157 0.843 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.183 0.817 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.043 12.747 15.574 22.492 hybrid contribution -0.762 1.082 -0.141 1.331 sum -10.806 13.829 15.433 23.371 Atomic orbital electron populations 1.22739 0.81615 1.02795 0.99529 1.88034 1.18953 1.27024 1.95214 1.22554 0.93702 0.85326 0.99796 1.21970 0.93069 0.97633 0.94326 1.60369 1.11504 1.55979 1.03619 1.22045 0.86694 0.98812 0.99410 1.21590 0.96042 1.01773 0.95535 1.19643 0.94021 0.99331 0.93594 1.19782 1.18028 0.92459 0.97450 1.23534 1.02589 0.99011 0.91557 1.77356 1.22867 0.88494 1.22083 1.49404 1.47186 1.07078 1.07094 1.19705 0.98296 0.74601 0.93602 1.21252 1.24071 1.03775 1.07471 0.91325 1.24954 0.95679 0.95155 0.98342 1.69926 1.36954 1.07522 1.39036 0.86315 0.80485 0.77209 0.82435 1.20324 1.20980 1.19669 1.22272 1.01645 0.97546 0.88571 0.94522 0.94235 0.89620 0.93134 0.93487 0.90129 0.93959 0.84298 0.91109 0.95609 0.92261 0.91046 0.92159 0.92229 0.81693 0.93821 0.92866 0.92348 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.37 -4.03 10.65 -35.23 -0.38 -4.41 16 3 C 0.06 0.52 6.22 37.15 0.23 0.75 16 4 C 0.06 0.51 6.07 -3.83 -0.02 0.48 16 5 N -0.68 -7.14 6.45 -113.78 -0.73 -7.87 16 6 C 0.06 0.61 5.69 -3.82 -0.02 0.58 16 7 C -0.11 -1.36 5.46 -26.73 -0.15 -1.51 16 8 C -0.03 -0.34 5.70 -27.88 -0.16 -0.50 16 9 C -0.26 -4.57 5.35 -105.05 -0.56 -5.13 16 10 C 0.02 0.33 11.96 -17.36 -0.21 0.12 16 11 N -0.28 -6.64 12.41 30.63 0.38 -6.26 16 12 N -0.33 -7.68 3.67 -62.54 -0.23 -7.91 16 13 C 0.26 6.65 6.26 -5.19 -0.03 6.61 16 14 C -0.53 -15.00 9.24 -34.44 -0.32 -15.31 16 15 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 18 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.05 0.97 11.36 -17.22 -0.20 0.77 16 23 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.34 3.29 8.73 -39.30 -0.34 2.94 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.17 2.51 8.06 -52.48 -0.42 2.09 16 38 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.36 8.07 -51.93 -0.42 0.94 16 40 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.16 2.65 8.06 -52.49 -0.42 2.23 16 LS Contribution 350.12 15.07 5.28 5.28 Total: -1.00 -31.80 350.12 -7.46 -39.26 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.07 Total: 0.41 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.42 Total: -10.17 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.15 Total: -47.09 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: -0.38 Total: -4.41 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.80 -7.46 -39.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054680042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.097 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds