Wall clock time and date at job start Mon Mar 30 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00255 * 2 1 4 4 C 1.52994 * 109.47542 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47457 * 64.99904 * 4 3 2 6 6 C 1.46902 * 111.00309 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46830 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46895 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47290 * 179.97438 * 8 7 6 10 10 C 1.39875 * 126.03728 * 89.97551 * 9 8 7 11 11 N 1.30839 * 108.20184 * 180.02562 * 10 9 8 12 12 N 1.40085 * 108.20364 * 0.02562 * 11 10 9 13 13 C 1.46506 * 126.03688 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46726 * 304.99793 * 13 12 11 15 15 H 1.08005 * 120.00478 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99831 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99654 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00104 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47286 * 89.99594 * 18 16 14 20 20 H 1.48502 * 109.47386 * 209.99777 * 18 16 14 21 21 H 1.48502 * 109.46961 * 329.99747 * 18 16 14 22 22 C 1.34949 * 107.93019 * 359.97438 * 12 11 10 23 23 H 1.09003 * 109.46746 * 300.00012 * 1 2 3 24 24 H 1.09004 * 109.47242 * 59.99326 * 1 2 3 25 25 H 1.08993 * 109.47266 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47049 * 60.00071 * 3 2 1 27 27 H 1.09004 * 109.46950 * 300.00433 * 3 2 1 28 28 H 1.09011 * 109.46789 * 305.00323 * 4 3 2 29 29 H 1.08991 * 109.47595 * 185.00352 * 4 3 2 30 30 H 1.00892 * 111.00181 * 56.04489 * 5 4 3 31 31 H 1.08994 * 109.46936 * 60.00084 * 6 5 4 32 32 H 1.09001 * 109.46950 * 299.99686 * 6 5 4 33 33 H 1.08999 * 109.47176 * 59.99836 * 7 6 5 34 34 H 1.08996 * 109.47547 * 299.99842 * 7 6 5 35 35 H 1.08999 * 109.47185 * 60.00034 * 8 7 6 36 36 H 1.09001 * 109.47075 * 299.99841 * 8 7 6 37 37 H 1.08003 * 125.89835 * 359.76152 * 10 9 8 38 38 H 1.08998 * 109.47019 * 64.99789 * 13 12 11 39 39 H 1.09005 * 109.47133 * 184.99915 * 13 12 11 40 40 H 0.97001 * 119.99266 * 179.97438 * 17 16 14 41 41 H 1.07997 * 126.13040 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9770 0.5628 -1.2561 6 6 5.4395 0.4298 -1.2920 7 6 5.8602 -0.2210 -2.6112 8 6 7.3835 -0.3589 -2.6489 9 6 7.7979 -1.0005 -3.9480 10 6 8.1043 -0.3293 -5.1363 11 7 8.4179 -1.2215 -6.0405 12 7 8.3201 -2.4905 -5.4554 13 6 8.5865 -3.7688 -6.1198 14 6 7.7401 -3.8751 -7.3621 15 1 7.0710 -3.0708 -7.6302 16 6 7.8199 -4.9993 -8.1565 17 7 8.6351 -5.9784 -7.8303 18 14 6.7713 -5.1308 -9.6968 19 1 7.5146 -4.5655 -10.8514 20 1 6.4568 -6.5578 -9.9612 21 1 5.5088 -4.3735 -9.5022 22 6 7.9383 -2.3277 -4.1713 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5681 0.8410 29 1 3.9785 2.1764 0.0890 30 1 3.6410 1.0809 -2.0540 31 1 5.7683 -0.1921 -0.4594 32 1 5.8961 1.4163 -1.2112 33 1 5.5313 0.4005 -3.4441 34 1 5.4036 -1.2075 -2.6916 35 1 7.7127 -0.9802 -1.8160 36 1 7.8397 0.6278 -2.5688 37 1 8.0815 0.7404 -5.2834 38 1 9.6404 -3.8239 -6.3923 39 1 8.3429 -4.5878 -5.4430 40 1 8.6909 -6.7694 -8.3890 41 1 7.7744 -3.1154 -3.4509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054680042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:54 Heat of formation + Delta-G solvation = -8.056975 kcal Electronic energy + Delta-G solvation = -19195.687533 eV Core-core repulsion = 16110.927228 eV Total energy + Delta-G solvation = -3084.760305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88678 -39.01026 -37.42836 -35.79841 -34.67058 -33.11889 -31.27437 -29.79443 -28.54567 -26.98646 -25.63378 -24.69057 -22.88263 -22.23096 -21.68605 -20.75848 -18.63408 -17.71271 -17.59462 -16.87184 -16.58012 -16.38664 -16.00737 -15.79091 -15.34359 -15.02213 -14.93850 -14.35997 -14.18499 -13.97347 -13.69119 -13.50248 -13.25937 -12.91019 -12.77665 -12.65234 -12.54863 -12.35880 -12.29309 -12.04566 -11.78189 -11.70713 -11.51348 -11.08294 -10.75887 -10.53860 -10.17958 -9.23818 -9.06116 -8.35608 -6.49983 1.25479 1.36387 1.37846 1.49219 2.00551 2.06363 2.34112 2.95928 2.96506 3.29603 3.95478 4.12487 4.14632 4.23646 4.27566 4.33481 4.49825 4.55279 4.59190 4.59547 4.63156 4.69149 4.71683 4.88655 4.90609 4.91906 4.93545 5.01270 5.11725 5.17283 5.24896 5.53842 5.55094 5.60200 5.80388 6.02061 6.15040 6.34600 6.36259 6.55638 6.63933 7.11104 7.20387 8.72508 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.018770 B = 0.002997 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.363083 B = 9339.222414 C =10372.557262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.060 3.940 4 C 0.060 3.940 5 N -0.703 5.703 6 C 0.068 3.932 7 C -0.103 4.103 8 C -0.021 4.021 9 C -0.247 4.247 10 C 0.026 3.974 11 N -0.340 5.340 12 N -0.358 5.358 13 C 0.271 3.729 14 C -0.548 4.548 15 H 0.051 0.949 16 C 0.016 3.984 17 N -0.922 5.922 18 Si 0.974 3.026 19 H -0.272 1.272 20 H -0.270 1.270 21 H -0.272 1.272 22 C 0.034 3.966 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.342 0.658 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.203 0.797 38 H 0.017 0.983 39 H 0.050 0.950 40 H 0.273 0.727 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.582 15.756 17.741 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.016 4.016 4 C -0.069 4.069 5 N -0.335 5.335 6 C -0.061 4.061 7 C -0.141 4.141 8 C -0.060 4.060 9 C -0.259 4.259 10 C -0.159 4.159 11 N -0.163 5.163 12 N -0.139 5.139 13 C 0.151 3.849 14 C -0.586 4.586 15 H 0.069 0.931 16 C -0.184 4.184 17 N -0.561 5.561 18 Si 0.797 3.203 19 H -0.197 1.197 20 H -0.195 1.195 21 H -0.197 1.197 22 C -0.114 4.114 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.220 0.780 38 H 0.035 0.965 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -11.106 14.412 16.633 24.651 hybrid contribution -0.449 0.667 -0.364 0.882 sum -11.555 15.079 16.268 25.011 Atomic orbital electron populations 1.22859 0.80360 1.03270 1.00560 1.87979 1.20563 1.28726 1.95467 1.22686 0.93358 0.84624 1.00979 1.22011 0.93499 0.98335 0.93050 1.60345 1.11629 1.56949 1.04577 1.21913 0.86892 0.99430 0.97866 1.21454 0.95328 1.00548 0.96784 1.19728 0.94455 1.00416 0.91368 1.20268 1.15525 0.91463 0.98692 1.24249 1.00185 1.00216 0.91243 1.77280 1.25456 0.89102 1.24419 1.49134 1.49998 1.06350 1.08408 1.19218 0.96260 0.76280 0.93116 1.21400 1.24531 1.03691 1.08987 0.93099 1.25793 0.96738 0.94603 1.01264 1.70005 1.37844 1.07967 1.40234 0.85319 0.78634 0.77806 0.78497 1.19726 1.19468 1.19653 1.22877 1.01398 0.99490 0.87586 0.92957 0.93681 0.89550 0.91250 0.92885 0.90954 0.91899 0.84008 0.91153 0.93822 0.92706 0.93523 0.90790 0.89782 0.78015 0.96540 0.93203 0.91795 0.80003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.36 10.65 -148.98 -1.59 -9.95 16 3 C 0.06 0.87 6.22 71.98 0.45 1.31 16 4 C 0.06 0.90 6.07 86.30 0.52 1.42 16 5 N -0.70 -13.40 6.45 -513.90 -3.31 -16.71 16 6 C 0.07 1.21 5.69 86.30 0.49 1.70 16 7 C -0.10 -2.30 5.46 30.59 0.17 -2.13 16 8 C -0.02 -0.47 5.70 29.85 0.17 -0.30 16 9 C -0.25 -8.13 5.35 -20.14 -0.11 -8.23 16 10 C 0.03 0.93 11.96 85.24 1.02 1.95 16 11 N -0.34 -16.03 12.41 -57.02 -0.71 -16.74 16 12 N -0.36 -17.22 3.67 -351.78 -1.29 -18.51 16 13 C 0.27 14.67 6.26 85.63 0.54 15.21 16 14 C -0.55 -32.12 9.24 25.60 0.24 -31.89 16 15 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 16 C 0.02 0.92 5.46 84.66 0.46 1.39 16 17 N -0.92 -53.77 13.29 21.45 0.28 -53.49 16 18 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 C 0.03 1.32 11.36 83.54 0.95 2.27 16 23 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.04 0.55 8.14 -2.38 -0.02 0.54 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.19 8.14 -2.38 -0.02 1.18 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.34 6.03 8.73 -89.70 -0.78 5.25 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.20 5.55 8.06 -2.91 -0.02 5.53 16 38 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 2.67 8.07 -2.38 -0.02 2.65 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.18 5.94 8.06 -2.91 -0.02 5.92 16 Total: -1.00 -70.00 350.12 1.76 -68.24 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.21 Total: 15.98 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 6.14 Total: -15.69 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -5.03 Total: -105.45 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -1.59 Total: -9.95 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.00 1.76 -68.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054680042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.184 kcal (2) G-P(sol) polarization free energy of solvation -70.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds