Wall clock time and date at job start Mon Mar 30 2020 04:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00008 * 2 1 4 4 O 1.21283 * 119.99796 * 359.72474 * 3 2 1 5 5 C 1.50701 * 120.00371 * 179.72212 * 3 2 1 6 6 H 1.08998 * 109.48356 * 299.95632 * 5 3 2 7 7 C 1.53049 * 109.48585 * 59.99714 * 5 3 2 8 8 N 1.46959 * 109.36375 * 178.37144 * 7 5 3 9 9 C 1.46963 * 110.87923 * 300.68250 * 8 7 5 10 10 C 1.53053 * 109.36298 * 59.31883 * 9 8 7 11 11 N 1.46950 * 109.49240 * 179.88994 * 5 3 2 12 12 C 1.46906 * 110.99902 * 56.84287 * 11 5 3 13 13 C 1.53004 * 109.46880 * 168.12462 * 12 11 5 14 14 C 1.50694 * 115.55045 * 268.94855 * 13 12 11 15 15 H 1.08007 * 120.00065 * 114.67904 * 14 13 12 16 16 C 1.37875 * 120.00030 * 294.67580 * 14 13 12 17 17 N 1.31516 * 119.99940 * 162.76920 * 16 14 13 18 18 Si 1.86799 * 120.00336 * 342.76698 * 16 14 13 19 19 H 1.48505 * 109.46606 * 84.47482 * 18 16 14 20 20 H 1.48500 * 109.47400 * 204.47456 * 18 16 14 21 21 H 1.48496 * 109.47114 * 324.47732 * 18 16 14 22 22 C 1.53002 * 117.49475 * 123.24414 * 13 12 11 23 23 C 1.52996 * 117.49880 * 54.62299 * 13 12 11 24 24 H 1.08997 * 109.46875 * 180.27556 * 1 2 3 25 25 H 1.08995 * 109.47462 * 300.27609 * 1 2 3 26 26 H 1.08997 * 109.46612 * 60.28027 * 1 2 3 27 27 H 0.97001 * 119.99935 * 179.72108 * 2 1 3 28 28 H 1.08997 * 109.48888 * 298.33740 * 7 5 3 29 29 H 1.09000 * 109.48789 * 58.38663 * 7 5 3 30 30 H 1.00896 * 111.00235 * 176.81404 * 8 7 5 31 31 H 1.09002 * 109.48854 * 179.28721 * 9 8 7 32 32 H 1.09000 * 109.48294 * 299.32678 * 9 8 7 33 33 H 1.08996 * 109.49033 * 61.57251 * 10 9 8 34 34 H 1.09004 * 109.48340 * 181.61249 * 10 9 8 35 35 H 1.08996 * 109.47388 * 288.12484 * 12 11 5 36 36 H 1.08996 * 109.47049 * 48.12626 * 12 11 5 37 37 H 0.96997 * 120.00566 * 179.97438 * 17 16 14 38 38 H 1.09000 * 117.50196 * 359.97438 * 22 13 12 39 39 H 1.08997 * 117.49701 * 145.02018 * 22 13 12 40 40 H 1.08998 * 117.49740 * 214.97774 * 23 13 12 41 41 H 1.09001 * 117.49971 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0050 5 6 3.6459 1.1673 0.0063 6 1 4.0058 0.6563 0.8994 7 6 4.1617 0.4428 -1.2393 8 7 5.6308 0.4784 -1.2503 9 6 6.1211 1.8639 -1.2542 10 6 5.6052 2.5883 -0.0086 11 7 4.1362 2.5526 0.0024 12 6 3.5999 3.3041 1.1450 13 6 4.3496 4.6310 1.2799 14 6 5.5617 4.6047 2.1748 15 1 6.5447 4.7665 1.7576 16 6 5.4159 4.3740 3.5263 17 7 6.4552 4.0155 4.2481 18 14 3.7422 4.5708 4.3322 19 1 2.9632 3.3173 4.1676 20 1 3.9198 4.8570 5.7785 21 1 3.0132 5.6945 3.6912 22 6 3.5209 5.9168 1.2498 23 6 4.3973 5.5433 0.0526 24 1 -0.3633 -1.0276 0.0049 25 1 -0.3634 0.5181 0.8874 26 1 -0.3632 0.5095 -0.8925 27 1 1.9501 -0.8401 0.0041 28 1 3.8232 -0.5932 -1.2237 29 1 3.7790 0.9372 -2.1321 30 1 5.9992 -0.0377 -2.0351 31 1 7.2111 1.8639 -1.2497 32 1 5.7612 2.3744 -2.1475 33 1 5.9878 2.0938 0.8842 34 1 5.9440 3.6242 -0.0240 35 1 2.5397 3.5004 0.9855 36 1 3.7281 2.7201 2.0564 37 1 6.3528 3.8536 5.1989 38 1 2.4416 5.8174 1.1335 39 1 3.8523 6.7439 1.8775 40 1 5.3053 6.1247 -0.1073 41 1 3.8949 5.1980 -0.8510 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089086571.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:45 Heat of formation + Delta-G solvation = 17.071922 kcal Electronic energy + Delta-G solvation = -22089.331493 eV Core-core repulsion = 19005.660859 eV Total energy + Delta-G solvation = -3083.670634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11261 -38.01954 -36.55441 -34.58055 -33.18550 -32.06939 -30.98626 -27.62678 -26.51931 -25.56929 -23.66145 -22.94022 -21.40137 -20.56859 -19.41330 -18.61177 -17.48479 -16.33632 -16.08426 -15.47122 -15.17207 -14.81109 -14.41306 -14.21396 -14.06173 -13.86424 -13.52844 -13.07366 -12.86031 -12.62043 -12.35556 -12.26948 -11.87814 -11.37615 -11.14379 -10.96534 -10.79838 -10.63327 -10.42324 -10.21924 -9.90003 -9.51740 -9.23647 -9.07299 -8.87892 -8.51476 -8.37279 -8.18161 -7.50449 -6.09765 -4.03479 2.81585 3.22328 3.35662 3.43815 3.55743 4.30850 4.45347 4.50825 4.95142 5.01397 5.08613 5.21438 5.33290 5.43721 5.44112 5.46810 5.68849 5.73987 5.86621 5.89262 5.98315 6.11142 6.32245 6.35797 6.42529 6.58267 6.63874 6.74893 6.89557 6.97352 7.00720 7.15598 7.27516 7.35084 7.42415 7.47896 7.76170 7.85469 7.93056 8.42306 8.56212 8.96029 9.58775 11.01566 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.008257 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.695130 B = 3390.413840 C = 4045.764658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.742 5.742 3 C 0.517 3.483 4 O -0.512 6.512 5 C 0.065 3.935 6 H 0.071 0.929 7 C 0.076 3.924 8 N -0.688 5.688 9 C 0.054 3.946 10 C 0.064 3.936 11 N -0.509 5.509 12 C 0.079 3.921 13 C -0.001 4.001 14 C -0.488 4.488 15 H 0.076 0.924 16 C 0.083 3.917 17 N -0.891 5.891 18 Si 0.862 3.138 19 H -0.280 1.280 20 H -0.294 1.294 21 H -0.251 1.251 22 C -0.195 4.195 23 C -0.170 4.170 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.399 0.601 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.339 0.661 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.942 -10.398 -10.653 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.396 5.396 3 C 0.303 3.697 4 O -0.386 6.386 5 C -0.048 4.048 6 H 0.089 0.911 7 C -0.054 4.054 8 N -0.319 5.319 9 C -0.075 4.075 10 C -0.064 4.064 11 N -0.234 5.234 12 C -0.048 4.048 13 C -0.002 4.002 14 C -0.525 4.525 15 H 0.094 0.906 16 C -0.120 4.120 17 N -0.527 5.527 18 Si 0.689 3.311 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.175 1.175 22 C -0.233 4.233 23 C -0.208 4.208 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.233 0.767 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.156 0.844 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.103 0.897 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.431 -9.488 -10.207 15.793 hybrid contribution -0.602 -0.548 0.529 0.971 sum -8.032 -10.036 -9.678 16.091 Atomic orbital electron populations 1.21473 0.79944 1.01770 1.02236 1.45854 1.07509 1.08762 1.77428 1.20679 0.90005 0.83464 0.75568 1.90643 1.70079 1.30760 1.47136 1.21633 0.90463 0.93452 0.99249 0.91120 1.21793 0.88897 0.98693 0.96062 1.60493 1.07250 1.15181 1.49007 1.22209 0.99442 0.87248 0.98577 1.22280 0.86232 1.02333 0.95527 1.62162 1.08909 1.07888 1.44431 1.22277 0.99133 0.94107 0.89239 1.19424 0.96647 0.86832 0.97310 1.20315 0.91507 1.49454 0.91180 0.90624 1.24876 0.96183 0.93619 0.97361 1.69988 1.30816 1.44520 1.07387 0.87081 0.85945 0.80062 0.77964 1.20569 1.22107 1.17523 1.23075 0.95724 1.02146 1.02388 1.22650 1.00878 1.05056 0.92192 0.90962 0.92416 0.92397 0.76720 0.90814 0.94134 0.84359 0.90491 0.94752 0.93239 0.87511 0.89724 0.95481 0.92742 0.91443 0.89988 0.90475 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 10.70 59.85 0.64 1.54 16 2 N -0.74 -8.69 5.61 -67.08 -0.38 -9.06 16 3 C 0.52 8.53 6.88 -10.99 -0.08 8.46 16 4 O -0.51 -10.48 13.65 5.55 0.08 -10.41 16 5 C 0.06 1.09 2.32 -68.81 -0.16 0.93 16 6 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 7 C 0.08 0.99 5.88 -3.77 -0.02 0.97 16 8 N -0.69 -9.21 6.90 -113.63 -0.78 -9.99 16 9 C 0.05 0.84 6.72 -3.76 -0.03 0.81 16 10 C 0.06 1.26 4.41 -3.77 -0.02 1.24 16 11 N -0.51 -10.14 4.31 -227.89 -0.98 -11.12 16 12 C 0.08 1.84 3.97 -3.82 -0.02 1.82 16 13 C 0.00 -0.02 0.08 -155.66 -0.01 -0.03 16 14 C -0.49 -13.37 7.68 -34.44 -0.26 -13.64 16 15 H 0.08 2.23 7.82 -52.48 -0.41 1.82 16 16 C 0.08 2.36 5.29 -17.82 -0.09 2.27 16 17 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 18 Si 0.86 22.14 25.76 -169.99 -4.38 17.76 16 19 H -0.28 -7.20 7.01 56.52 0.40 -6.81 16 20 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 21 H -0.25 -6.24 5.81 56.52 0.33 -5.91 16 22 C -0.20 -4.47 7.73 -26.73 -0.21 -4.67 16 23 C -0.17 -3.69 8.63 -26.73 -0.23 -3.92 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.40 3.42 8.28 -40.82 -0.34 3.08 16 28 H 0.07 0.73 7.62 -51.93 -0.40 0.34 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.34 3.54 8.90 -39.29 -0.35 3.19 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.11 2.31 4.98 -51.93 -0.26 2.05 16 35 H 0.08 2.05 5.24 -51.93 -0.27 1.77 16 36 H 0.03 0.69 6.51 -51.93 -0.34 0.35 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 39 H 0.08 1.91 7.97 -51.93 -0.41 1.49 16 40 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -32.53 315.50 -8.03 -40.56 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.63 Total: 7.80 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.48 Total: -4.23 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -1.37 Total: -56.24 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.38 Total: 17.76 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.53 -8.03 -40.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089086571.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.635 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds