Wall clock time and date at job start Mon Mar 30 2020 04:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00318 * 2 1 4 4 C 1.53002 * 109.47099 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47142 * 65.00031 * 4 3 2 6 6 C 1.46897 * 110.99910 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46763 * 180.02562 * 6 5 4 8 8 N 1.30496 * 125.65380 * 89.97884 * 7 6 5 9 9 C 1.34130 * 109.26014 * 180.02562 * 8 7 6 10 10 C 1.34674 * 108.01710 * 359.97438 * 9 8 7 11 11 N 1.35054 * 125.64688 * 270.28804 * 7 6 5 12 12 C 1.46496 * 126.39961 * 359.97438 * 11 7 6 13 13 C 1.53001 * 109.46973 * 85.14741 * 12 11 7 14 14 C 1.53004 * 109.46805 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46755 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99946 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99855 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00134 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00344 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47031 * 89.99712 * 19 17 15 21 21 H 1.48499 * 109.47361 * 209.99789 * 19 17 15 22 22 H 1.48504 * 109.46700 * 330.00181 * 19 17 15 23 23 H 1.09008 * 109.47007 * 300.00092 * 1 2 3 24 24 H 1.09002 * 109.47580 * 59.99575 * 1 2 3 25 25 H 1.09001 * 109.47850 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46927 * 60.00427 * 3 2 1 27 27 H 1.08995 * 109.46912 * 300.00308 * 3 2 1 28 28 H 1.08998 * 109.47588 * 305.00424 * 4 3 2 29 29 H 1.08996 * 109.47073 * 185.00061 * 4 3 2 30 30 H 1.00898 * 110.99653 * 303.95862 * 5 4 3 31 31 H 1.08996 * 109.47123 * 60.00255 * 6 5 4 32 32 H 1.09002 * 109.46871 * 299.99737 * 6 5 4 33 33 H 1.07997 * 125.98942 * 179.97438 * 9 8 7 34 34 H 1.08002 * 126.58669 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47200 * 205.15089 * 12 11 7 36 36 H 1.09002 * 109.47024 * 325.14755 * 12 11 7 37 37 H 1.09006 * 109.46811 * 299.99901 * 13 12 11 38 38 H 1.08990 * 109.46920 * 59.99860 * 13 12 11 39 39 H 1.08996 * 109.46528 * 299.99531 * 14 13 12 40 40 H 1.09002 * 109.47416 * 59.99876 * 14 13 12 41 41 H 0.97001 * 119.99889 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 5.4405 0.4301 -1.2895 7 6 5.8559 -0.2103 -2.5889 8 7 6.1409 0.4246 -3.6928 9 6 6.4682 -0.4643 -4.6425 10 6 6.3833 -1.6968 -4.1064 11 7 5.9893 -1.5367 -2.8054 12 6 5.7591 -2.6043 -1.8291 13 6 4.2724 -2.9652 -1.8090 14 6 4.0319 -4.0798 -0.7888 15 6 2.5677 -4.4357 -0.7695 16 1 1.8776 -3.9182 -1.4196 17 6 2.1090 -5.4218 0.0779 18 7 0.8311 -5.7321 0.0952 19 14 3.3027 -6.3173 1.2016 20 1 3.3998 -5.5960 2.4961 21 1 2.8155 -7.6996 1.4405 22 1 4.6417 -6.3679 0.5616 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8901 27 1 1.6886 1.8463 -0.8899 28 1 3.8508 0.5683 0.8426 29 1 3.9785 2.1764 0.0902 30 1 3.5303 -0.3316 -1.3920 31 1 5.7693 -0.1911 -0.4564 32 1 5.8964 1.4170 -1.2091 33 1 6.7504 -0.2322 -5.6588 34 1 6.5826 -2.6322 -4.6082 35 1 6.3424 -3.4823 -2.1065 36 1 6.0637 -2.2636 -0.8395 37 1 3.6891 -2.0871 -1.5315 38 1 3.9678 -3.3058 -2.7985 39 1 4.6152 -4.9579 -1.0660 40 1 4.3364 -3.7388 0.2006 41 1 0.5085 -6.4261 0.6911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091002640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:50 Heat of formation + Delta-G solvation = 7.044272 kcal Electronic energy + Delta-G solvation = -20774.093672 eV Core-core repulsion = 17689.988206 eV Total energy + Delta-G solvation = -3084.105466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.87581 -37.94912 -35.87127 -35.32608 -33.00814 -31.18993 -31.00229 -28.47405 -27.24845 -26.06428 -24.63133 -23.42492 -21.84962 -21.13943 -20.48481 -19.38472 -17.15294 -16.52361 -16.50793 -16.00743 -15.63281 -15.06549 -14.92775 -14.40592 -14.26633 -13.98770 -13.85348 -13.41042 -13.11412 -12.74334 -12.39397 -12.21874 -12.12759 -11.90671 -11.73319 -11.43175 -11.30654 -10.94735 -10.90317 -10.24750 -10.08583 -9.89157 -9.70252 -9.47934 -9.33190 -9.13789 -8.59832 -8.42786 -8.14989 -6.09324 -4.07725 2.23794 3.03248 3.24513 3.31379 3.32550 3.33319 3.99347 4.31060 4.38673 4.60911 4.90736 4.97567 5.09709 5.24102 5.28498 5.33109 5.36115 5.39637 5.53155 5.56299 5.59545 5.61088 5.65640 5.72930 5.88381 5.96190 6.06488 6.13478 6.31456 6.56245 6.62512 6.94107 6.98119 7.08194 7.21797 7.37168 7.42054 7.51916 7.69855 8.34603 8.47434 8.96074 9.52057 11.04037 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.006823 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.869932 B = 4102.719544 C = 5807.586498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.382 6.382 3 C 0.059 3.941 4 C 0.062 3.938 5 N -0.682 5.682 6 C 0.147 3.853 7 C 0.205 3.795 8 N -0.481 5.481 9 C -0.038 4.038 10 C -0.053 4.053 11 N -0.445 5.445 12 C 0.093 3.907 13 C -0.114 4.114 14 C -0.008 4.008 15 C -0.517 4.517 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.267 1.267 23 H 0.035 0.965 24 H 0.037 0.963 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.357 0.643 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.166 0.834 34 H 0.171 0.829 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.017 0.983 40 H 0.012 0.988 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 11.558 -1.079 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.300 6.300 3 C -0.018 4.018 4 C -0.067 4.067 5 N -0.318 5.318 6 C 0.016 3.984 7 C -0.058 4.058 8 N -0.200 5.200 9 C -0.187 4.187 10 C -0.187 4.187 11 N -0.126 5.126 12 C -0.029 4.029 13 C -0.152 4.152 14 C -0.046 4.046 15 C -0.555 4.555 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.192 1.192 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.179 0.821 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.183 0.817 34 H 0.188 0.812 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.646 12.586 -1.321 14.786 hybrid contribution 0.397 -2.080 1.249 2.459 sum 8.043 10.506 -0.071 13.231 Atomic orbital electron populations 1.22731 0.80731 1.03519 0.99072 1.87985 1.19984 1.26814 1.95262 1.22567 0.93218 0.85807 1.00230 1.21969 0.93796 1.00001 0.90929 1.60548 1.04820 1.31462 1.34977 1.20116 0.89307 1.00071 0.88859 1.22896 1.05511 0.80016 0.97341 1.70169 1.17768 1.33254 0.98824 1.22216 1.08083 0.88828 0.99582 1.22712 1.09628 1.01092 0.85284 1.45642 1.48710 1.07550 1.10701 1.22304 1.00617 0.88779 0.91154 1.21909 0.90715 1.00732 1.01882 1.19507 0.98516 0.93101 0.93495 1.21017 0.91423 1.19885 1.23163 0.90847 1.24996 0.94938 0.96601 0.96733 1.69908 1.13517 1.31742 1.38741 0.86822 0.81928 0.79262 0.81484 1.20297 1.21328 1.19167 0.94633 0.94391 0.88872 0.93123 0.92511 0.94065 0.89645 0.82088 0.93763 0.88338 0.81692 0.81182 0.89145 0.89670 0.91881 0.91783 0.96464 0.96934 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 11.01 101.05 1.11 1.62 16 2 O -0.38 -6.35 10.22 -35.23 -0.36 -6.71 16 3 C 0.06 0.76 6.28 37.16 0.23 0.99 16 4 C 0.06 0.78 6.11 -3.82 -0.02 0.75 16 5 N -0.68 -10.13 6.49 -115.06 -0.75 -10.87 16 6 C 0.15 2.03 5.99 -4.98 -0.03 2.00 16 7 C 0.20 3.28 7.42 -155.41 -1.15 2.12 16 8 N -0.48 -8.21 11.25 -10.81 -0.12 -8.34 16 9 C -0.04 -0.57 11.87 -17.81 -0.21 -0.78 16 10 C -0.05 -0.75 11.58 -16.56 -0.19 -0.94 16 11 N -0.44 -6.80 2.75 -113.90 -0.31 -7.12 16 12 C 0.09 1.40 5.89 -4.04 -0.02 1.37 16 13 C -0.11 -2.14 5.48 -26.73 -0.15 -2.28 16 14 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 15 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 16 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 19 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 23 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.36 6.13 5.90 -39.29 -0.23 5.89 16 31 H 0.04 0.57 7.18 -51.93 -0.37 0.19 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.18 7.21 -51.93 -0.37 0.81 16 37 H 0.06 1.24 5.76 -51.93 -0.30 0.94 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -32.39 338.32 -8.02 -40.41 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.70 Total: 5.74 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.98 Total: -8.22 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.41 Total: -52.76 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.36 Total: -6.71 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.39 -8.02 -40.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091002640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.451 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds