Wall clock time and date at job start Mon Mar 30 2020 04:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00318 * 2 1 4 4 C 1.53002 * 109.47099 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47142 * 65.00031 * 4 3 2 6 6 C 1.46897 * 110.99910 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46763 * 180.02562 * 6 5 4 8 8 N 1.30496 * 125.65380 * 89.97884 * 7 6 5 9 9 C 1.34130 * 109.26014 * 180.02562 * 8 7 6 10 10 C 1.34674 * 108.01710 * 359.97438 * 9 8 7 11 11 N 1.35054 * 125.64688 * 270.28804 * 7 6 5 12 12 C 1.46496 * 126.39961 * 359.97438 * 11 7 6 13 13 C 1.53001 * 109.46973 * 85.14741 * 12 11 7 14 14 C 1.53004 * 109.46805 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.46755 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99946 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99855 * 179.97438 * 15 14 13 18 18 N 1.31521 * 120.00134 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00344 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47031 * 89.99712 * 19 17 15 21 21 H 1.48499 * 109.47361 * 209.99789 * 19 17 15 22 22 H 1.48504 * 109.46700 * 330.00181 * 19 17 15 23 23 H 1.09008 * 109.47007 * 300.00092 * 1 2 3 24 24 H 1.09002 * 109.47580 * 59.99575 * 1 2 3 25 25 H 1.09001 * 109.47850 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46927 * 60.00427 * 3 2 1 27 27 H 1.08995 * 109.46912 * 300.00308 * 3 2 1 28 28 H 1.08998 * 109.47588 * 305.00424 * 4 3 2 29 29 H 1.08996 * 109.47073 * 185.00061 * 4 3 2 30 30 H 1.00898 * 110.99653 * 303.95862 * 5 4 3 31 31 H 1.08996 * 109.47123 * 60.00255 * 6 5 4 32 32 H 1.09002 * 109.46871 * 299.99737 * 6 5 4 33 33 H 1.07997 * 125.98942 * 179.97438 * 9 8 7 34 34 H 1.08002 * 126.58669 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47200 * 205.15089 * 12 11 7 36 36 H 1.09002 * 109.47024 * 325.14755 * 12 11 7 37 37 H 1.09006 * 109.46811 * 299.99901 * 13 12 11 38 38 H 1.08990 * 109.46920 * 59.99860 * 13 12 11 39 39 H 1.08996 * 109.46528 * 299.99531 * 14 13 12 40 40 H 1.09002 * 109.47416 * 59.99876 * 14 13 12 41 41 H 0.97001 * 119.99889 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 5.4405 0.4301 -1.2895 7 6 5.8559 -0.2103 -2.5889 8 7 6.1409 0.4246 -3.6928 9 6 6.4682 -0.4643 -4.6425 10 6 6.3833 -1.6968 -4.1064 11 7 5.9893 -1.5367 -2.8054 12 6 5.7591 -2.6043 -1.8291 13 6 4.2724 -2.9652 -1.8090 14 6 4.0319 -4.0798 -0.7888 15 6 2.5677 -4.4357 -0.7695 16 1 1.8776 -3.9182 -1.4196 17 6 2.1090 -5.4218 0.0779 18 7 0.8311 -5.7321 0.0952 19 14 3.3027 -6.3173 1.2016 20 1 3.3998 -5.5960 2.4961 21 1 2.8155 -7.6996 1.4405 22 1 4.6417 -6.3679 0.5616 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8901 27 1 1.6886 1.8463 -0.8899 28 1 3.8508 0.5683 0.8426 29 1 3.9785 2.1764 0.0902 30 1 3.5303 -0.3316 -1.3920 31 1 5.7693 -0.1911 -0.4564 32 1 5.8964 1.4170 -1.2091 33 1 6.7504 -0.2322 -5.6588 34 1 6.5826 -2.6322 -4.6082 35 1 6.3424 -3.4823 -2.1065 36 1 6.0637 -2.2636 -0.8395 37 1 3.6891 -2.0871 -1.5315 38 1 3.9678 -3.3058 -2.7985 39 1 4.6152 -4.9579 -1.0660 40 1 4.3364 -3.7388 0.2006 41 1 0.5085 -6.4261 0.6911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091002640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:50 Heat of formation + Delta-G solvation = -15.353547 kcal Electronic energy + Delta-G solvation = -20775.064915 eV Core-core repulsion = 17689.988206 eV Total energy + Delta-G solvation = -3085.076708 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.01721 -39.07252 -37.10793 -36.66758 -34.85632 -32.88955 -32.07620 -29.59491 -28.88342 -27.20405 -25.75069 -25.03517 -22.89248 -22.29482 -22.17491 -20.57180 -18.97462 -17.95944 -17.60591 -17.08776 -16.77748 -16.30685 -16.22932 -16.14201 -15.62851 -15.16616 -15.04797 -14.75786 -14.53535 -14.17989 -13.92474 -13.49834 -13.35308 -13.11443 -12.92934 -12.75712 -12.65451 -12.46042 -12.01365 -11.98192 -11.84542 -11.61817 -11.40142 -10.89971 -10.75320 -10.59798 -10.45765 -9.51985 -9.26399 -8.27064 -6.31460 1.09638 1.36821 1.38592 1.49467 1.89903 2.17355 2.36755 2.92914 3.08400 3.24450 3.50518 3.75997 3.87022 4.03768 4.09443 4.27676 4.31926 4.35808 4.39176 4.45997 4.49585 4.56147 4.60878 4.66130 4.76239 4.77902 4.86987 4.88418 4.90872 4.93211 5.37129 5.38180 5.50888 5.64392 5.89123 5.92157 6.23173 6.25672 6.30684 6.32686 6.75827 7.20021 7.32086 8.89967 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.006823 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.869932 B = 4102.719544 C = 5807.586498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.420 6.420 3 C 0.056 3.944 4 C 0.062 3.938 5 N -0.694 5.694 6 C 0.148 3.852 7 C 0.191 3.809 8 N -0.511 5.511 9 C -0.054 4.054 10 C -0.053 4.053 11 N -0.450 5.450 12 C 0.104 3.896 13 C -0.102 4.102 14 C -0.004 4.004 15 C -0.527 4.527 16 H 0.025 0.975 17 C 0.004 3.996 18 N -0.952 5.952 19 Si 0.950 3.050 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.238 1.238 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.114 0.886 30 H 0.340 0.660 31 H 0.056 0.944 32 H 0.111 0.889 33 H 0.188 0.812 34 H 0.200 0.800 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.030 0.970 40 H 0.025 0.975 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.317 11.772 -0.273 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.339 6.339 3 C -0.021 4.021 4 C -0.067 4.067 5 N -0.328 5.328 6 C 0.018 3.982 7 C -0.071 4.071 8 N -0.231 5.231 9 C -0.202 4.202 10 C -0.187 4.187 11 N -0.131 5.131 12 C -0.018 4.018 13 C -0.141 4.141 14 C -0.042 4.042 15 C -0.565 4.565 16 H 0.043 0.957 17 C -0.193 4.193 18 N -0.592 5.592 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.161 1.161 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.160 0.840 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.205 0.795 34 H 0.216 0.784 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.043 0.957 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.265 12.835 -0.534 16.444 hybrid contribution -0.507 -2.067 0.902 2.311 sum 9.758 10.768 0.367 14.536 Atomic orbital electron populations 1.22745 0.80070 1.02430 1.00914 1.87931 1.21080 1.29364 1.95561 1.22759 0.93391 0.84473 1.01427 1.22111 0.93640 1.01127 0.89778 1.60598 1.05411 1.30441 1.36369 1.20216 0.88718 1.00898 0.88400 1.23279 1.05535 0.80447 0.97840 1.70154 1.18752 1.34441 0.99742 1.22704 1.08102 0.88950 1.00396 1.23244 1.08489 1.02132 0.84829 1.45682 1.48887 1.07367 1.11191 1.22155 0.97606 0.89772 0.92256 1.21660 0.93768 0.98882 0.99775 1.19414 0.94797 0.94751 0.95195 1.21362 0.93809 1.19327 1.22042 0.95704 1.26018 0.96872 0.97688 0.98674 1.70085 1.16077 1.32861 1.40208 0.85668 0.80340 0.77440 0.79236 1.19358 1.21355 1.16124 0.92143 0.93149 0.91471 0.90560 0.92499 0.94408 0.86823 0.84024 0.92603 0.87079 0.79488 0.78352 0.86772 0.88042 0.93404 0.93394 0.95128 0.95717 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 11.01 113.37 1.25 2.25 16 2 O -0.42 -14.24 10.22 -148.98 -1.52 -15.76 16 3 C 0.06 1.39 6.28 71.98 0.45 1.84 16 4 C 0.06 1.47 6.11 86.30 0.53 1.99 16 5 N -0.69 -20.17 6.49 -517.93 -3.36 -23.53 16 6 C 0.15 3.87 5.99 85.56 0.51 4.38 16 7 C 0.19 5.86 7.42 138.13 1.02 6.88 16 8 N -0.51 -16.87 11.25 -188.12 -2.12 -18.98 16 9 C -0.05 -1.50 11.87 83.52 0.99 -0.51 16 10 C -0.05 -1.39 11.58 83.09 0.96 -0.42 16 11 N -0.45 -12.85 2.75 -514.28 -1.41 -14.27 16 12 C 0.10 2.83 5.89 86.38 0.51 3.34 16 13 C -0.10 -3.77 5.48 30.60 0.17 -3.60 16 14 C 0.00 -0.16 4.04 29.85 0.12 -0.04 16 15 C -0.53 -29.89 9.66 25.60 0.25 -29.64 16 16 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 17 C 0.00 0.23 5.47 84.65 0.46 0.69 16 18 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 19 Si 0.95 42.71 27.47 68.60 1.88 44.59 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 23 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.34 11.83 5.90 -89.70 -0.53 11.30 16 31 H 0.06 1.31 7.18 -2.39 -0.02 1.30 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.19 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.20 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.10 2.47 7.21 -2.39 -0.02 2.45 16 37 H 0.05 1.91 5.76 -2.38 -0.01 1.90 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 40 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 41 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -72.35 338.32 1.41 -70.94 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.42 Total: 28.90 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 7.22 Total: -12.83 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -6.59 Total: -115.84 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.52 Total: -15.76 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.59 kcal Total: -72.35 1.41 -70.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091002640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.583 kcal (2) G-P(sol) polarization free energy of solvation -72.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds