Wall clock time and date at job start Mon Mar 30 2020 05:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00301 * 2 1 4 4 H 1.48494 * 109.47403 * 240.00153 * 3 2 1 5 5 H 1.48501 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47239 * 120.00058 * 3 2 1 7 7 C 1.38810 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 197.01076 * 7 2 1 9 9 N 1.36936 * 119.99970 * 17.01644 * 7 2 1 10 10 C 1.47087 * 120.88313 * 206.58217 * 9 7 2 11 11 C 1.53232 * 108.52626 * 231.16384 * 10 9 7 12 12 N 1.46894 * 109.34015 * 306.17306 * 11 10 9 13 13 C 1.46897 * 111.00306 * 187.25128 * 12 11 10 14 14 C 1.52997 * 109.47464 * 169.99712 * 13 12 11 15 15 C 1.53006 * 109.47251 * 180.02562 * 14 13 12 16 16 N 1.46895 * 109.47089 * 180.02562 * 15 14 13 17 17 C 1.48563 * 111.00089 * 189.99848 * 16 15 14 18 18 C 1.54377 * 104.70244 * 200.89823 * 17 16 15 19 19 C 1.54571 * 104.91077 * 23.87897 * 18 17 16 20 20 C 1.48559 * 111.00314 * 74.58044 * 16 15 14 21 21 C 1.46904 * 111.27354 * 63.10129 * 12 11 10 22 22 C 1.47080 * 120.88605 * 26.56535 * 9 7 2 23 23 H 0.96997 * 119.99761 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.62669 * 111.45256 * 10 9 7 25 25 H 1.09003 * 109.62366 * 350.87550 * 10 9 7 26 26 H 1.08992 * 109.49635 * 186.20894 * 11 10 9 27 27 H 1.09010 * 109.48900 * 66.12793 * 11 10 9 28 28 H 1.09004 * 109.47121 * 49.99702 * 13 12 11 29 29 H 1.08997 * 109.47327 * 290.00128 * 13 12 11 30 30 H 1.08994 * 109.47281 * 60.00607 * 14 13 12 31 31 H 1.09002 * 109.47430 * 299.99807 * 14 13 12 32 32 H 1.08994 * 109.47060 * 59.99530 * 15 14 13 33 33 H 1.09001 * 109.46925 * 299.99757 * 15 14 13 34 34 H 1.09003 * 110.40769 * 319.73769 * 17 16 15 35 35 H 1.09009 * 110.40968 * 82.05602 * 17 16 15 36 36 H 1.08996 * 110.32336 * 142.80898 * 18 17 16 37 37 H 1.08999 * 110.32193 * 265.01489 * 18 17 16 38 38 H 1.08996 * 110.29850 * 241.08481 * 19 18 17 39 39 H 1.08997 * 110.31352 * 118.89167 * 19 18 17 40 40 H 1.08995 * 110.40803 * 277.81805 * 20 16 15 41 41 H 1.09003 * 110.41152 * 40.14073 * 20 16 15 42 42 H 1.09001 * 109.48840 * 56.85671 * 21 12 11 43 43 H 1.08997 * 109.49608 * 176.93559 * 21 12 11 44 44 H 1.08997 * 109.62714 * 248.55018 * 22 9 7 45 45 H 1.09001 * 109.62213 * 9.12167 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2731 9 7 1.3704 -2.3619 -0.3481 10 6 1.8308 -3.6611 0.1653 11 6 2.0021 -4.6193 -1.0182 12 7 0.7545 -4.6641 -1.7924 13 6 0.8179 -5.6982 -2.8337 14 6 -0.5697 -5.8875 -3.4499 15 6 -0.5037 -6.9651 -4.5340 16 7 -1.8358 -7.1463 -5.1260 17 6 -1.8685 -8.3413 -6.0080 18 6 -3.0772 -8.1079 -6.9395 19 6 -3.2787 -6.5754 -6.9532 20 6 -2.1753 -6.0167 -6.0292 21 6 0.4398 -3.3516 -2.3725 22 6 0.2045 -2.3416 -1.2444 23 1 -0.4849 0.8400 0.0004 24 1 1.0919 -4.0636 0.8583 25 1 2.7856 -3.5355 0.6759 26 1 2.2361 -5.6172 -0.6474 27 1 2.8135 -4.2682 -1.6559 28 1 1.1509 -6.6379 -2.3928 29 1 1.5206 -5.3913 -3.6083 30 1 -0.9026 -4.9480 -3.8908 31 1 -1.2724 -6.1945 -2.6753 32 1 -0.1709 -7.9045 -4.0928 33 1 0.1991 -6.6585 -5.3088 34 1 -0.9486 -8.4103 -6.5888 35 1 -2.0128 -9.2460 -5.4172 36 1 -2.8575 -8.4716 -7.9432 37 1 -3.9628 -8.6035 -6.5418 38 1 -4.2641 -6.3201 -6.5634 39 1 -3.1583 -6.1870 -7.9644 40 1 -2.5528 -5.1709 -5.4547 41 1 -1.3029 -5.7205 -6.6119 42 1 1.2729 -3.0183 -2.9913 43 1 -0.4592 -3.4302 -2.9838 44 1 -0.6907 -2.6171 -0.6870 45 1 0.0841 -1.3435 -1.6658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104065109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:10 Heat of formation + Delta-G solvation = 30.223165 kcal Electronic energy + Delta-G solvation = -20859.355905 eV Core-core repulsion = 17912.088646 eV Total energy + Delta-G solvation = -2947.267259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.12552 -38.06322 -35.01582 -33.28997 -31.37756 -29.86420 -29.65795 -28.99094 -26.51581 -24.22360 -22.87627 -22.38476 -21.22364 -21.11459 -20.26238 -19.02855 -16.77291 -16.20615 -16.07314 -15.21697 -14.99416 -14.44892 -14.37243 -13.90326 -13.76521 -13.40247 -13.32944 -13.05114 -12.79494 -12.67086 -12.25061 -11.66748 -11.57621 -11.50805 -11.31917 -11.25553 -11.09540 -10.93169 -10.74100 -10.70608 -10.53630 -10.33686 -10.20549 -9.97402 -9.67305 -9.51930 -8.63774 -8.46217 -7.73295 -6.61758 -5.73915 -3.14879 3.40597 3.46144 3.47427 3.79175 4.38840 4.47005 4.52763 4.58137 4.77487 5.02042 5.05994 5.24221 5.33388 5.41113 5.41926 5.46715 5.50364 5.53217 5.57045 5.61658 5.68844 5.79649 5.80485 5.89944 5.94860 5.98146 6.02629 6.20040 6.26290 6.30252 6.42424 6.46579 6.61865 6.71261 6.76221 6.91580 6.99032 7.31327 7.69489 7.72155 7.77237 7.87591 8.47892 9.25596 9.89227 10.48232 11.34847 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.003494 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.314736 B = 8011.984799 C = 8634.870438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.532 5.532 13 C 0.057 3.943 14 C -0.108 4.108 15 C 0.048 3.952 16 N -0.510 5.510 17 C 0.031 3.969 18 C -0.124 4.124 19 C -0.125 4.125 20 C 0.030 3.970 21 C 0.034 3.966 22 C 0.178 3.822 23 H 0.254 0.746 24 H 0.025 0.975 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.062 0.938 44 H 0.026 0.974 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -15.349 -13.082 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.085 4.085 12 N -0.257 5.257 13 C -0.072 4.072 14 C -0.146 4.146 15 C -0.081 4.081 16 N -0.234 5.234 17 C -0.098 4.098 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.098 4.098 21 C -0.095 4.095 22 C 0.052 3.948 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.028 -15.347 -12.277 20.062 hybrid contribution 1.757 1.131 -1.254 2.437 sum -2.271 -14.216 -13.531 19.757 Atomic orbital electron populations 1.70027 1.05175 1.25515 1.54074 1.25021 0.95313 0.98311 1.01140 0.86365 0.78881 0.83441 0.78051 1.21167 1.21612 1.20922 1.19157 0.92541 0.84877 1.41578 0.91746 1.44125 1.34178 1.01232 1.52409 1.20976 0.97678 0.86501 0.92640 1.22603 0.89659 0.99289 0.96907 1.61933 1.34131 1.05859 1.23771 1.22026 0.95922 0.95878 0.93374 1.21510 0.97621 0.97991 0.97518 1.22256 0.88880 0.99909 0.97061 1.65359 1.27258 1.02385 1.28434 1.23103 0.97325 0.94875 0.94448 1.22336 0.98466 0.96406 0.99035 1.22353 0.99531 0.95224 0.99237 1.23166 0.97502 0.95067 0.94041 1.22929 0.98595 0.89412 0.98542 1.20856 0.88924 0.96544 0.88445 0.93603 0.95662 0.92720 0.92132 0.95646 0.91600 0.96019 0.91842 0.90312 0.90927 0.94882 0.94111 0.90212 0.91559 0.91022 0.90934 0.91516 0.89775 0.93929 0.96019 0.91951 0.95589 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 11.15 55.49 0.62 -26.08 16 2 C 0.00 0.01 4.94 -17.43 -0.09 -0.07 16 3 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -7.10 9.63 -15.06 -0.15 -7.25 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -15.61 3.04 -172.02 -0.52 -16.13 16 10 C 0.15 3.28 6.69 -3.60 -0.02 3.26 16 11 C 0.04 0.84 5.62 -3.71 -0.02 0.82 16 12 N -0.53 -9.88 4.63 -234.33 -1.08 -10.97 16 13 C 0.06 0.84 4.96 -3.83 -0.02 0.82 16 14 C -0.11 -1.46 5.26 -26.73 -0.14 -1.60 16 15 C 0.05 0.54 4.83 -3.82 -0.02 0.52 16 16 N -0.51 -5.72 5.34 -229.97 -1.23 -6.95 16 17 C 0.03 0.28 6.45 -2.18 -0.01 0.26 16 18 C -0.12 -0.98 7.02 -25.18 -0.18 -1.16 16 19 C -0.13 -1.07 7.01 -25.18 -0.18 -1.24 16 20 C 0.03 0.31 5.92 -2.18 -0.01 0.30 16 21 C 0.03 0.70 5.46 -3.70 -0.02 0.68 16 22 C 0.18 4.45 5.42 -3.60 -0.02 4.43 16 23 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 26 H 0.06 0.97 7.99 -51.93 -0.41 0.56 16 27 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 29 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 30 H 0.06 0.91 5.73 -51.93 -0.30 0.62 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.03 0.37 7.76 -51.93 -0.40 -0.03 16 34 H 0.04 0.36 8.00 -51.93 -0.42 -0.06 16 35 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.93 7.85 -51.93 -0.41 0.53 16 41 H 0.04 0.44 7.75 -51.93 -0.40 0.04 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.16 6.16 -51.93 -0.32 0.84 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 LS Contribution 341.35 15.07 5.14 5.14 Total: -1.00 -30.18 341.35 -11.40 -41.58 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.42 Total: -3.36 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -0.87 Total: -0.22 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -2.22 Total: -60.13 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.18 -11.40 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104065109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.805 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds