Wall clock time and date at job start Mon Mar 30 2020 05:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00301 * 2 1 4 4 H 1.48494 * 109.47403 * 240.00153 * 3 2 1 5 5 H 1.48501 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47239 * 120.00058 * 3 2 1 7 7 C 1.38810 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 197.01076 * 7 2 1 9 9 N 1.36936 * 119.99970 * 17.01644 * 7 2 1 10 10 C 1.47087 * 120.88313 * 206.58217 * 9 7 2 11 11 C 1.53232 * 108.52626 * 231.16384 * 10 9 7 12 12 N 1.46894 * 109.34015 * 306.17306 * 11 10 9 13 13 C 1.46897 * 111.00306 * 187.25128 * 12 11 10 14 14 C 1.52997 * 109.47464 * 169.99712 * 13 12 11 15 15 C 1.53006 * 109.47251 * 180.02562 * 14 13 12 16 16 N 1.46895 * 109.47089 * 180.02562 * 15 14 13 17 17 C 1.48563 * 111.00089 * 189.99848 * 16 15 14 18 18 C 1.54377 * 104.70244 * 200.89823 * 17 16 15 19 19 C 1.54571 * 104.91077 * 23.87897 * 18 17 16 20 20 C 1.48559 * 111.00314 * 74.58044 * 16 15 14 21 21 C 1.46904 * 111.27354 * 63.10129 * 12 11 10 22 22 C 1.47080 * 120.88605 * 26.56535 * 9 7 2 23 23 H 0.96997 * 119.99761 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.62669 * 111.45256 * 10 9 7 25 25 H 1.09003 * 109.62366 * 350.87550 * 10 9 7 26 26 H 1.08992 * 109.49635 * 186.20894 * 11 10 9 27 27 H 1.09010 * 109.48900 * 66.12793 * 11 10 9 28 28 H 1.09004 * 109.47121 * 49.99702 * 13 12 11 29 29 H 1.08997 * 109.47327 * 290.00128 * 13 12 11 30 30 H 1.08994 * 109.47281 * 60.00607 * 14 13 12 31 31 H 1.09002 * 109.47430 * 299.99807 * 14 13 12 32 32 H 1.08994 * 109.47060 * 59.99530 * 15 14 13 33 33 H 1.09001 * 109.46925 * 299.99757 * 15 14 13 34 34 H 1.09003 * 110.40769 * 319.73769 * 17 16 15 35 35 H 1.09009 * 110.40968 * 82.05602 * 17 16 15 36 36 H 1.08996 * 110.32336 * 142.80898 * 18 17 16 37 37 H 1.08999 * 110.32193 * 265.01489 * 18 17 16 38 38 H 1.08996 * 110.29850 * 241.08481 * 19 18 17 39 39 H 1.08997 * 110.31352 * 118.89167 * 19 18 17 40 40 H 1.08995 * 110.40803 * 277.81805 * 20 16 15 41 41 H 1.09003 * 110.41152 * 40.14073 * 20 16 15 42 42 H 1.09001 * 109.48840 * 56.85671 * 21 12 11 43 43 H 1.08997 * 109.49608 * 176.93559 * 21 12 11 44 44 H 1.08997 * 109.62714 * 248.55018 * 22 9 7 45 45 H 1.09001 * 109.62213 * 9.12167 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0548 -1.2228 0.2731 9 7 1.3704 -2.3619 -0.3481 10 6 1.8308 -3.6611 0.1653 11 6 2.0021 -4.6193 -1.0182 12 7 0.7545 -4.6641 -1.7924 13 6 0.8179 -5.6982 -2.8337 14 6 -0.5697 -5.8875 -3.4499 15 6 -0.5037 -6.9651 -4.5340 16 7 -1.8358 -7.1463 -5.1260 17 6 -1.8685 -8.3413 -6.0080 18 6 -3.0772 -8.1079 -6.9395 19 6 -3.2787 -6.5754 -6.9532 20 6 -2.1753 -6.0167 -6.0292 21 6 0.4398 -3.3516 -2.3725 22 6 0.2045 -2.3416 -1.2444 23 1 -0.4849 0.8400 0.0004 24 1 1.0919 -4.0636 0.8583 25 1 2.7856 -3.5355 0.6759 26 1 2.2361 -5.6172 -0.6474 27 1 2.8135 -4.2682 -1.6559 28 1 1.1509 -6.6379 -2.3928 29 1 1.5206 -5.3913 -3.6083 30 1 -0.9026 -4.9480 -3.8908 31 1 -1.2724 -6.1945 -2.6753 32 1 -0.1709 -7.9045 -4.0928 33 1 0.1991 -6.6585 -5.3088 34 1 -0.9486 -8.4103 -6.5888 35 1 -2.0128 -9.2460 -5.4172 36 1 -2.8575 -8.4716 -7.9432 37 1 -3.9628 -8.6035 -6.5418 38 1 -4.2641 -6.3201 -6.5634 39 1 -3.1583 -6.1870 -7.9644 40 1 -2.5528 -5.1709 -5.4547 41 1 -1.3029 -5.7205 -6.6119 42 1 1.2729 -3.0183 -2.9913 43 1 -0.4592 -3.4302 -2.9838 44 1 -0.6907 -2.6171 -0.6870 45 1 0.0841 -1.3435 -1.6658 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104065109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:10 Heat of formation + Delta-G solvation = 10.247582 kcal Electronic energy + Delta-G solvation = -20860.222111 eV Core-core repulsion = 17912.088646 eV Total energy + Delta-G solvation = -2948.133466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07053 -39.50590 -36.62871 -34.59880 -33.09298 -31.65168 -30.88002 -29.73308 -28.18549 -25.69116 -24.47150 -24.03041 -22.31852 -21.84844 -21.20510 -20.82432 -18.73595 -17.21883 -16.95794 -16.74248 -16.26870 -16.05121 -15.66014 -15.35602 -15.26602 -14.91739 -14.80652 -14.63009 -13.84905 -13.70152 -13.34625 -13.22425 -12.96918 -12.74865 -12.59131 -12.42703 -12.33310 -12.24153 -12.15671 -12.02785 -12.00900 -11.82804 -11.66162 -11.45604 -11.36221 -11.20521 -10.58924 -9.44857 -9.25332 -8.69201 -7.88193 -5.33339 1.45806 1.48385 1.55597 2.50216 2.85325 3.18917 3.27324 3.67325 3.74467 3.78677 4.02843 4.06705 4.25404 4.29512 4.34578 4.35572 4.40710 4.48783 4.59238 4.63900 4.64722 4.67451 4.69736 4.75069 4.79385 4.87392 4.90474 4.98480 5.02341 5.09565 5.17640 5.19570 5.23043 5.31042 5.36026 5.39064 5.59631 5.66145 5.93505 6.08169 6.19895 6.32119 6.36765 7.12011 7.82759 8.37659 9.18638 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.003494 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.314736 B = 8011.984799 C = 8634.870438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.616 5.616 10 C 0.143 3.857 11 C 0.055 3.945 12 N -0.544 5.544 13 C 0.062 3.938 14 C -0.099 4.099 15 C 0.056 3.944 16 N -0.529 5.529 17 C 0.029 3.971 18 C -0.121 4.121 19 C -0.124 4.124 20 C 0.027 3.973 21 C 0.053 3.947 22 C 0.186 3.814 23 H 0.251 0.749 24 H 0.015 0.985 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.022 0.978 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.078 0.922 44 H -0.004 1.004 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -16.932 -14.331 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.397 4.397 8 H 0.086 0.914 9 N -0.340 5.340 10 C 0.018 3.982 11 C -0.074 4.074 12 N -0.269 5.269 13 C -0.066 4.066 14 C -0.137 4.137 15 C -0.073 4.073 16 N -0.253 5.253 17 C -0.099 4.099 18 C -0.159 4.159 19 C -0.162 4.162 20 C -0.101 4.101 21 C -0.076 4.076 22 C 0.060 3.940 23 H 0.060 0.940 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.040 0.960 28 H 0.106 0.894 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.096 0.904 44 H 0.014 0.986 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.051 -16.970 -13.532 21.918 hybrid contribution 1.434 1.563 -0.819 2.274 sum -1.617 -15.407 -14.351 21.117 Atomic orbital electron populations 1.70196 1.06704 1.25976 1.55309 1.25837 0.96118 1.01611 1.01224 0.85287 0.77518 0.78973 0.78335 1.20456 1.21857 1.19994 1.19520 0.92938 0.86044 1.41239 0.91424 1.44421 1.34238 1.02251 1.53078 1.21145 0.97433 0.85540 0.94127 1.22466 0.89500 1.00005 0.95422 1.61881 1.34308 1.05453 1.25225 1.22081 0.96753 0.95245 0.92561 1.21389 0.96467 0.98190 0.97664 1.22140 0.89283 0.99473 0.96435 1.65327 1.27130 1.03381 1.29442 1.23173 0.98139 0.94080 0.94474 1.22351 0.98091 0.95778 0.99715 1.22361 0.98645 0.95801 0.99418 1.23176 0.98134 0.94694 0.94134 1.22566 0.99093 0.89486 0.96488 1.20601 0.87801 0.96299 0.89254 0.94030 0.96671 0.92030 0.88586 0.95975 0.89423 0.95475 0.93208 0.91762 0.89783 0.94482 0.93510 0.89712 0.89918 0.90780 0.91191 0.90261 0.91263 0.93936 0.96691 0.90394 0.98554 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.98 11.15 21.65 0.24 -56.74 16 2 C -0.05 -3.02 4.94 84.86 0.42 -2.61 16 3 Si 0.97 45.74 29.59 68.60 2.03 47.77 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.27 -15.26 9.63 84.03 0.81 -14.45 16 8 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 9 N -0.62 -32.77 3.04 -698.14 -2.12 -34.89 16 10 C 0.14 6.27 6.69 86.35 0.58 6.85 16 11 C 0.06 1.96 5.62 86.38 0.49 2.45 16 12 N -0.54 -19.45 4.63 -895.29 -4.14 -23.59 16 13 C 0.06 1.67 4.96 86.30 0.43 2.10 16 14 C -0.10 -2.52 5.26 30.60 0.16 -2.36 16 15 C 0.06 1.14 4.83 86.31 0.42 1.56 16 16 N -0.53 -11.02 5.34 -881.48 -4.71 -15.72 16 17 C 0.03 0.46 6.45 86.45 0.56 1.02 16 18 C -0.12 -1.64 7.02 31.60 0.22 -1.42 16 19 C -0.12 -1.92 7.01 31.60 0.22 -1.70 16 20 C 0.03 0.53 5.92 86.45 0.51 1.04 16 21 C 0.05 2.16 5.46 86.38 0.47 2.63 16 22 C 0.19 9.62 5.42 86.35 0.47 10.08 16 23 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 24 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 2.56 7.95 -2.39 -0.02 2.54 16 26 H 0.10 2.76 7.99 -2.39 -0.02 2.74 16 27 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.09 2.04 7.97 -2.38 -0.02 2.02 16 29 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 30 H 0.05 1.40 5.73 -2.39 -0.01 1.38 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 33 H 0.04 0.74 7.76 -2.39 -0.02 0.72 16 34 H 0.05 0.69 8.00 -2.39 -0.02 0.67 16 35 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 41 H 0.04 0.83 7.75 -2.39 -0.02 0.81 16 42 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 2.90 6.16 -2.39 -0.01 2.89 16 44 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.06 3.20 6.12 -2.39 -0.01 3.18 16 Total: -1.00 -65.59 341.35 -2.03 -67.63 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.92 Total: 10.35 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.75 Total: 5.19 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -10.73 Total: -130.94 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -65.59 -2.03 -67.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104065109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.873 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds