Wall clock time and date at job start Mon Mar 30 2020 04:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99748 * 2 1 4 4 O 1.21282 * 120.00037 * 179.72740 * 3 2 1 5 5 C 1.50702 * 120.00016 * 359.72589 * 3 2 1 6 6 N 1.46899 * 109.46956 * 180.02562 * 5 3 2 7 7 C 1.46898 * 110.99720 * 294.29450 * 6 5 3 8 8 C 1.53239 * 109.34036 * 172.74594 * 7 6 5 9 9 N 1.47079 * 108.51699 * 53.83757 * 8 7 6 10 10 C 1.36942 * 120.88423 * 128.83482 * 9 8 7 11 11 H 1.07997 * 120.00193 * 206.56090 * 10 9 8 12 12 C 1.38808 * 119.99734 * 26.56270 * 10 9 8 13 13 N 1.31627 * 120.00151 * 17.01932 * 12 10 9 14 14 Si 1.86797 * 120.00157 * 197.01533 * 12 10 9 15 15 H 1.48503 * 109.46940 * 89.99865 * 14 12 10 16 16 H 1.48500 * 109.47650 * 209.99898 * 14 12 10 17 17 H 1.48496 * 109.46972 * 330.00345 * 14 12 10 18 18 C 1.47080 * 118.23533 * 308.81133 * 9 8 7 19 19 C 1.46899 * 110.99756 * 170.00085 * 6 5 3 20 20 C 1.46499 * 120.00120 * 179.72815 * 2 1 3 21 21 C 1.53002 * 117.49894 * 8.89239 * 20 2 1 22 22 C 1.52999 * 117.49647 * 300.27129 * 20 2 1 23 23 H 1.08998 * 109.47003 * 90.00248 * 1 2 3 24 24 H 1.08998 * 109.46859 * 209.99937 * 1 2 3 25 25 H 1.08993 * 109.47155 * 329.99652 * 1 2 3 26 26 H 1.09000 * 109.46773 * 299.99775 * 5 3 2 27 27 H 1.08998 * 109.47117 * 60.00092 * 5 3 2 28 28 H 1.09000 * 109.49692 * 292.71187 * 7 6 5 29 29 H 1.09012 * 109.49091 * 52.79156 * 7 6 5 30 30 H 1.08995 * 109.63012 * 294.12833 * 8 7 6 31 31 H 1.09005 * 109.62557 * 173.53915 * 8 7 6 32 32 H 0.96996 * 120.00074 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.63324 * 291.47321 * 18 9 8 34 34 H 1.09002 * 109.62393 * 170.89644 * 18 9 8 35 35 H 1.08997 * 109.49249 * 307.21078 * 19 6 5 36 36 H 1.08998 * 109.49725 * 67.29091 * 19 6 5 37 37 H 1.09000 * 115.54992 * 154.60408 * 20 2 1 38 38 H 1.08991 * 117.49649 * 0.02562 * 21 20 2 39 39 H 1.09004 * 117.49447 * 145.02862 * 21 20 2 40 40 H 1.09003 * 117.49795 * 214.98380 * 22 20 2 41 41 H 1.09004 * 117.50002 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0050 5 6 1.3853 2.4723 -0.0062 6 7 2.3399 3.5889 -0.0056 7 6 3.1061 3.6256 1.2472 8 6 4.2088 4.6839 1.1369 9 7 3.5928 5.9614 0.7470 10 6 3.8447 7.1076 1.4529 11 1 3.1175 7.9059 1.4636 12 6 5.0348 7.2431 2.1544 13 7 6.0505 6.4499 1.8869 14 14 5.1948 8.5514 3.4781 15 1 4.7768 7.9858 4.7861 16 1 6.6077 9.0007 3.5620 17 1 4.3270 9.7076 3.1388 18 6 2.6995 5.9753 -0.4213 19 6 1.6563 4.8660 -0.2496 20 6 2.1975 -1.2687 0.0060 21 6 1.3896 -2.5519 -0.1977 22 6 1.9583 -2.2169 1.1826 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 0.7624 2.5279 -0.8990 27 1 0.7550 2.5322 0.8810 28 1 2.4411 3.8779 2.0731 29 1 3.5560 2.6491 1.4272 30 1 4.9329 4.3808 0.3807 31 1 4.7062 4.7962 2.1003 32 1 6.8822 6.5449 2.3769 33 1 3.2785 5.7963 -1.3272 34 1 2.1991 6.9413 -0.4881 35 1 1.0545 4.7892 -1.1552 36 1 1.0114 5.1011 0.5971 37 1 3.2020 -1.2336 -0.4159 38 1 0.3132 -2.4521 -0.3366 39 1 1.8625 -3.3614 -0.7538 40 1 2.8052 -2.8060 1.5346 41 1 1.2555 -1.8970 1.9520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104067864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:43 Heat of formation + Delta-G solvation = 42.712191 kcal Electronic energy + Delta-G solvation = -21016.600746 eV Core-core repulsion = 17934.041957 eV Total energy + Delta-G solvation = -3082.558789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11334 -38.06075 -36.92123 -34.25568 -33.83470 -31.27604 -29.80086 -28.16831 -27.21027 -25.23671 -22.82768 -22.59208 -22.49992 -21.53920 -19.13121 -19.01112 -17.34072 -16.67241 -16.42816 -15.68925 -15.17444 -14.64703 -14.41393 -14.12335 -14.03668 -13.38325 -13.35301 -12.97294 -12.92050 -12.70384 -12.58762 -12.30258 -11.76050 -11.66593 -11.35335 -11.12167 -10.99347 -10.75038 -10.69420 -10.43877 -10.20554 -10.02275 -9.83257 -9.60504 -9.27620 -8.55285 -8.42327 -7.75594 -6.58201 -5.69351 -3.11155 2.71341 2.75647 3.42611 3.48807 3.50604 3.64543 4.36766 4.50174 4.56924 4.63362 4.71359 4.75712 4.90716 5.11171 5.30232 5.35708 5.37445 5.45075 5.49280 5.54432 5.59408 5.77227 5.81228 5.94349 5.99166 6.17565 6.32598 6.40481 6.47887 6.66095 6.86222 7.00282 7.24855 7.34828 7.63775 7.77030 7.82563 7.90511 8.33600 8.51955 9.29493 9.93159 10.52321 11.39141 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.004145 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.063781 B = 6754.014245 C = 7164.728575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.517 3.483 4 O -0.504 6.504 5 C 0.039 3.961 6 N -0.517 5.517 7 C 0.033 3.967 8 C 0.182 3.818 9 N -0.597 5.597 10 C -0.253 4.253 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.901 5.901 14 Si 0.902 3.098 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.280 1.280 18 C 0.150 3.850 19 C 0.045 3.955 20 C 0.086 3.914 21 C -0.188 4.188 22 C -0.195 4.195 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.077 0.923 30 H 0.028 0.972 31 H 0.087 0.913 32 H 0.254 0.746 33 H 0.026 0.974 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.946 -15.930 -3.611 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.336 5.336 3 C 0.305 3.695 4 O -0.376 6.376 5 C -0.092 4.092 6 N -0.242 5.242 7 C -0.096 4.096 8 C 0.056 3.944 9 N -0.320 5.320 10 C -0.382 4.382 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.546 5.546 14 Si 0.732 3.268 15 H -0.216 1.216 16 H -0.218 1.218 17 H -0.205 1.205 18 C 0.023 3.977 19 C -0.084 4.084 20 C -0.018 4.018 21 C -0.226 4.226 22 C -0.234 4.234 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.096 0.904 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.151 0.849 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.761 -15.916 -3.923 20.774 hybrid contribution -0.664 0.598 1.382 1.645 sum -13.425 -15.319 -2.542 20.527 Atomic orbital electron populations 1.21806 0.79787 1.03204 1.01990 1.47403 1.06392 1.04804 1.74966 1.20778 0.88366 0.84622 0.75767 1.90715 1.13728 1.86578 1.46590 1.21987 0.94780 0.90379 1.02053 1.61716 1.23589 1.01495 1.37387 1.23040 0.97163 1.01985 0.87401 1.20819 0.90744 0.81878 1.00950 1.44177 1.53465 1.05294 1.29087 1.19203 0.99314 0.95587 1.24139 0.91654 1.25036 0.94809 0.98625 1.01300 1.70051 1.02260 1.40843 1.41417 0.86289 0.76848 0.81335 0.82285 1.21571 1.21767 1.20512 1.20954 0.91271 0.94470 0.91034 1.22669 0.96749 0.90156 0.98830 1.21576 0.97509 0.80296 1.02443 1.23369 1.00373 0.98650 1.00227 1.23387 1.03949 1.03917 0.92108 0.92335 0.91120 0.90736 0.88572 0.92739 0.96410 0.90433 0.95351 0.89509 0.93640 0.95598 0.92547 0.92002 0.95359 0.84919 0.88328 0.87967 0.88068 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 9.49 59.85 0.57 1.14 16 2 N -0.60 -7.08 3.21 -173.93 -0.56 -7.64 16 3 C 0.52 8.11 7.34 -10.98 -0.08 8.03 16 4 O -0.50 -10.17 14.04 5.56 0.08 -10.09 16 5 C 0.04 0.58 4.01 -4.98 -0.02 0.56 16 6 N -0.52 -9.98 4.37 -235.76 -1.03 -11.01 16 7 C 0.03 0.72 5.26 -3.70 -0.02 0.70 16 8 C 0.18 4.79 5.42 -3.60 -0.02 4.77 16 9 N -0.60 -15.93 3.04 -172.01 -0.52 -16.45 16 10 C -0.25 -7.21 9.63 -15.06 -0.15 -7.35 16 11 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 12 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 13 N -0.90 -27.32 11.15 55.49 0.62 -26.70 16 14 Si 0.90 22.28 29.59 -169.99 -5.03 17.25 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.15 3.32 6.69 -3.60 -0.02 3.29 16 19 C 0.05 0.83 5.62 -3.70 -0.02 0.81 16 20 C 0.09 0.94 6.22 -67.93 -0.42 0.52 16 21 C -0.19 -1.43 9.72 -26.73 -0.26 -1.69 16 22 C -0.19 -1.72 10.12 -26.73 -0.27 -1.99 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.43 6.31 -51.93 -0.33 0.10 16 25 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 26 H 0.10 1.15 7.94 -51.93 -0.41 0.74 16 27 H 0.05 0.72 7.38 -51.93 -0.38 0.34 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 1.73 5.77 -51.92 -0.30 1.43 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 2.50 6.12 -51.93 -0.32 2.18 16 32 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.18 7.95 -51.93 -0.41 0.76 16 35 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.13 1.66 7.67 -51.93 -0.40 1.26 16 38 H 0.10 0.63 6.46 -51.93 -0.34 0.29 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -34.04 322.47 -8.95 -42.99 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.56 Total: -1.93 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -0.80 Total: 8.73 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -1.49 Total: -61.80 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.04 -8.95 -42.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104067864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.700 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds