Wall clock time and date at job start Mon Mar 30 2020 04:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34779 * 119.99748 * 2 1 4 4 O 1.21282 * 120.00037 * 179.72740 * 3 2 1 5 5 C 1.50702 * 120.00016 * 359.72589 * 3 2 1 6 6 N 1.46899 * 109.46956 * 180.02562 * 5 3 2 7 7 C 1.46898 * 110.99720 * 294.29450 * 6 5 3 8 8 C 1.53239 * 109.34036 * 172.74594 * 7 6 5 9 9 N 1.47079 * 108.51699 * 53.83757 * 8 7 6 10 10 C 1.36942 * 120.88423 * 128.83482 * 9 8 7 11 11 H 1.07997 * 120.00193 * 206.56090 * 10 9 8 12 12 C 1.38808 * 119.99734 * 26.56270 * 10 9 8 13 13 N 1.31627 * 120.00151 * 17.01932 * 12 10 9 14 14 Si 1.86797 * 120.00157 * 197.01533 * 12 10 9 15 15 H 1.48503 * 109.46940 * 89.99865 * 14 12 10 16 16 H 1.48500 * 109.47650 * 209.99898 * 14 12 10 17 17 H 1.48496 * 109.46972 * 330.00345 * 14 12 10 18 18 C 1.47080 * 118.23533 * 308.81133 * 9 8 7 19 19 C 1.46899 * 110.99756 * 170.00085 * 6 5 3 20 20 C 1.46499 * 120.00120 * 179.72815 * 2 1 3 21 21 C 1.53002 * 117.49894 * 8.89239 * 20 2 1 22 22 C 1.52999 * 117.49647 * 300.27129 * 20 2 1 23 23 H 1.08998 * 109.47003 * 90.00248 * 1 2 3 24 24 H 1.08998 * 109.46859 * 209.99937 * 1 2 3 25 25 H 1.08993 * 109.47155 * 329.99652 * 1 2 3 26 26 H 1.09000 * 109.46773 * 299.99775 * 5 3 2 27 27 H 1.08998 * 109.47117 * 60.00092 * 5 3 2 28 28 H 1.09000 * 109.49692 * 292.71187 * 7 6 5 29 29 H 1.09012 * 109.49091 * 52.79156 * 7 6 5 30 30 H 1.08995 * 109.63012 * 294.12833 * 8 7 6 31 31 H 1.09005 * 109.62557 * 173.53915 * 8 7 6 32 32 H 0.96996 * 120.00074 * 179.97438 * 13 12 10 33 33 H 1.08998 * 109.63324 * 291.47321 * 18 9 8 34 34 H 1.09002 * 109.62393 * 170.89644 * 18 9 8 35 35 H 1.08997 * 109.49249 * 307.21078 * 19 6 5 36 36 H 1.08998 * 109.49725 * 67.29091 * 19 6 5 37 37 H 1.09000 * 115.54992 * 154.60408 * 20 2 1 38 38 H 1.08991 * 117.49649 * 0.02562 * 21 20 2 39 39 H 1.09004 * 117.49447 * 145.02862 * 21 20 2 40 40 H 1.09003 * 117.49795 * 214.98380 * 22 20 2 41 41 H 1.09004 * 117.50002 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0050 5 6 1.3853 2.4723 -0.0062 6 7 2.3399 3.5889 -0.0056 7 6 3.1061 3.6256 1.2472 8 6 4.2088 4.6839 1.1369 9 7 3.5928 5.9614 0.7470 10 6 3.8447 7.1076 1.4529 11 1 3.1175 7.9059 1.4636 12 6 5.0348 7.2431 2.1544 13 7 6.0505 6.4499 1.8869 14 14 5.1948 8.5514 3.4781 15 1 4.7768 7.9858 4.7861 16 1 6.6077 9.0007 3.5620 17 1 4.3270 9.7076 3.1388 18 6 2.6995 5.9753 -0.4213 19 6 1.6563 4.8660 -0.2496 20 6 2.1975 -1.2687 0.0060 21 6 1.3896 -2.5519 -0.1977 22 6 1.9583 -2.2169 1.1826 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 0.7624 2.5279 -0.8990 27 1 0.7550 2.5322 0.8810 28 1 2.4411 3.8779 2.0731 29 1 3.5560 2.6491 1.4272 30 1 4.9329 4.3808 0.3807 31 1 4.7062 4.7962 2.1003 32 1 6.8822 6.5449 2.3769 33 1 3.2785 5.7963 -1.3272 34 1 2.1991 6.9413 -0.4881 35 1 1.0545 4.7892 -1.1552 36 1 1.0114 5.1011 0.5971 37 1 3.2020 -1.2336 -0.4159 38 1 0.3132 -2.4521 -0.3366 39 1 1.8625 -3.3614 -0.7538 40 1 2.8052 -2.8060 1.5346 41 1 1.2555 -1.8970 1.9520 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104067864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:42 Heat of formation + Delta-G solvation = 18.383805 kcal Electronic energy + Delta-G solvation = -21017.655704 eV Core-core repulsion = 17934.041957 eV Total energy + Delta-G solvation = -3083.613747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21836 -39.45781 -38.12500 -36.02730 -34.81486 -33.24379 -31.62708 -29.74177 -27.91417 -27.01094 -24.52324 -24.27902 -23.28781 -22.64044 -20.86614 -20.05425 -18.75408 -18.31170 -17.39418 -16.97145 -16.76262 -16.17779 -15.76568 -15.48825 -15.32561 -15.28205 -14.80323 -14.63886 -14.16483 -13.97095 -13.38171 -13.27662 -13.16743 -12.98240 -12.94157 -12.61416 -12.35594 -12.29238 -12.06246 -11.94484 -11.89363 -11.69280 -11.48603 -11.47338 -10.70701 -10.58371 -9.43919 -9.24796 -8.70354 -7.87091 -5.33622 1.45899 1.47872 1.57351 1.59643 1.84504 2.50695 2.92838 3.00574 3.27743 3.61675 3.68961 3.77206 4.03451 4.05409 4.16055 4.22157 4.31230 4.34685 4.37581 4.57614 4.65688 4.66416 4.70399 4.74523 4.84097 4.90291 4.94555 5.04010 5.07058 5.18016 5.19086 5.35178 5.59646 5.61270 5.65067 6.06906 6.17038 6.36326 6.43210 7.11233 7.24337 7.82520 8.38438 9.20104 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.035209 B = 0.004145 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.063781 B = 6754.014245 C = 7164.728575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.591 5.591 3 C 0.508 3.492 4 O -0.567 6.567 5 C 0.044 3.956 6 N -0.538 5.538 7 C 0.056 3.944 8 C 0.193 3.807 9 N -0.615 5.615 10 C -0.265 4.265 11 H 0.075 0.925 12 C -0.057 4.057 13 N -0.940 5.940 14 Si 0.974 3.026 15 H -0.285 1.285 16 H -0.296 1.296 17 H -0.263 1.263 18 C 0.141 3.859 19 C 0.057 3.943 20 C 0.047 3.953 21 C -0.155 4.155 22 C -0.192 4.192 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.133 0.867 27 H 0.079 0.921 28 H 0.020 0.980 29 H 0.069 0.931 30 H -0.014 1.014 31 H 0.053 0.947 32 H 0.249 0.751 33 H 0.010 0.990 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.035 0.965 37 H 0.103 0.897 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.698 -16.660 -3.722 24.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.324 5.324 3 C 0.297 3.703 4 O -0.445 6.445 5 C -0.086 4.086 6 N -0.264 5.264 7 C -0.073 4.073 8 C 0.067 3.933 9 N -0.339 5.339 10 C -0.395 4.395 11 H 0.092 0.908 12 C -0.252 4.252 13 N -0.587 5.587 14 Si 0.802 3.198 15 H -0.212 1.212 16 H -0.223 1.223 17 H -0.188 1.188 18 C 0.016 3.984 19 C -0.071 4.071 20 C -0.057 4.057 21 C -0.192 4.192 22 C -0.231 4.231 23 H 0.096 0.904 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.151 0.849 27 H 0.097 0.903 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.004 0.996 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.053 0.947 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.120 0.880 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.610 -16.682 -4.059 23.888 hybrid contribution 0.458 0.740 1.327 1.586 sum -16.152 -15.942 -2.732 22.858 Atomic orbital electron populations 1.22152 0.76819 1.04863 1.03774 1.47421 1.08146 1.03917 1.72931 1.21083 0.87790 0.86109 0.75351 1.90697 1.16289 1.87510 1.49976 1.22085 0.93858 0.87837 1.04837 1.61522 1.25737 1.03472 1.35626 1.22541 0.96129 0.99507 0.89101 1.20464 0.91581 0.83629 0.97631 1.44454 1.54021 1.04788 1.30629 1.19628 0.99413 0.96222 1.24214 0.90759 1.25917 0.94487 1.01176 1.03592 1.70245 1.02719 1.43037 1.42658 0.85165 0.76544 0.78988 0.79136 1.21202 1.22263 1.18782 1.21182 0.91427 0.97114 0.88721 1.22535 0.95310 0.88136 1.01150 1.21616 0.97526 0.81354 1.05238 1.23473 1.01115 0.96076 0.98544 1.23432 1.04288 1.02813 0.92558 0.90379 0.89091 0.89605 0.84879 0.90298 0.96187 0.91294 0.99618 0.92891 0.94183 0.97180 0.91246 0.87587 0.94671 0.87862 0.86180 0.86699 0.87956 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 9.49 127.77 1.21 1.94 16 2 N -0.59 -12.83 3.21 -822.60 -2.64 -15.47 16 3 C 0.51 15.53 7.34 87.66 0.64 16.18 16 4 O -0.57 -23.86 14.04 -3.04 -0.04 -23.90 16 5 C 0.04 1.17 4.01 85.56 0.34 1.51 16 6 N -0.54 -20.17 4.37 -899.82 -3.93 -24.10 16 7 C 0.06 2.53 5.26 86.38 0.45 2.99 16 8 C 0.19 10.72 5.42 86.35 0.47 11.19 16 9 N -0.61 -33.52 3.04 -698.13 -2.12 -35.64 16 10 C -0.26 -15.29 9.63 84.03 0.81 -14.48 16 11 H 0.07 4.07 7.88 -2.91 -0.02 4.05 16 12 C -0.06 -3.34 4.94 84.86 0.42 -2.92 16 13 N -0.94 -59.55 11.15 21.65 0.24 -59.31 16 14 Si 0.97 46.55 29.59 68.60 2.03 48.58 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 16 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 17 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 18 C 0.14 6.19 6.69 86.35 0.58 6.76 16 19 C 0.06 1.95 5.62 86.38 0.49 2.43 16 20 C 0.05 1.00 6.22 44.99 0.28 1.27 16 21 C -0.15 -1.88 9.72 30.60 0.30 -1.58 16 22 C -0.19 -3.07 10.12 30.59 0.31 -2.76 16 23 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.09 0.68 6.31 -2.39 -0.02 0.66 16 25 H 0.09 0.80 6.44 -2.39 -0.02 0.78 16 26 H 0.13 2.54 7.94 -2.39 -0.02 2.52 16 27 H 0.08 1.76 7.38 -2.39 -0.02 1.74 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 3.22 5.77 -2.38 -0.01 3.20 16 30 H -0.01 -0.90 8.14 -2.39 -0.02 -0.91 16 31 H 0.05 3.25 6.12 -2.38 -0.01 3.23 16 32 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 34 H 0.07 2.81 7.95 -2.39 -0.02 2.79 16 35 H 0.11 2.71 7.99 -2.39 -0.02 2.69 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.10 2.76 7.67 -2.39 -0.02 2.74 16 38 H 0.12 0.97 6.46 -2.39 -0.02 0.96 16 39 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 1.50 8.11 -2.39 -0.02 1.48 16 Total: -1.00 -79.29 322.47 0.83 -78.45 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.00 Total: 8.86 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: 6.30 Total: 22.53 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -8.45 Total: -134.53 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.04 Total: -23.90 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -79.29 0.83 -78.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104067864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.837 kcal (2) G-P(sol) polarization free energy of solvation -79.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds