Wall clock time and date at job start Mon Mar 30 2020 04:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46493 * 120.00417 * 2 1 4 4 C 1.50699 * 109.47651 * 270.00722 * 3 2 1 5 5 H 1.08007 * 119.99548 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00550 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99691 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00306 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47452 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47190 * 119.99669 * 8 6 4 11 11 H 1.48500 * 109.47533 * 239.99910 * 8 6 4 12 12 C 1.34778 * 119.99816 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00421 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99843 * 359.97438 * 12 2 1 15 15 N 1.46902 * 109.46976 * 180.02562 * 14 12 2 16 16 C 1.48523 * 111.00299 * 170.00184 * 15 14 12 17 17 C 1.54279 * 104.71733 * 159.27750 * 16 15 14 18 18 H 1.08994 * 112.38289 * 99.15117 * 17 16 15 19 19 C 1.54289 * 108.81480 * 224.27563 * 17 16 15 20 20 N 1.48514 * 104.81552 * 135.67043 * 19 17 16 21 21 C 1.48628 * 104.15355 * 320.41896 * 20 19 17 22 22 C 1.54282 * 104.78697 * 39.57360 * 21 20 19 23 23 H 1.09007 * 112.84003 * 98.90120 * 22 21 20 24 24 C 1.48521 * 111.00316 * 285.40009 * 15 14 12 25 25 H 1.09003 * 109.46690 * 269.99393 * 1 2 3 26 26 H 1.09003 * 109.47127 * 29.99121 * 1 2 3 27 27 H 1.09003 * 109.47517 * 149.99518 * 1 2 3 28 28 H 1.09005 * 109.46767 * 30.00440 * 3 2 1 29 29 H 1.09003 * 109.47691 * 149.99995 * 3 2 1 30 30 H 0.96997 * 120.00039 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47188 * 60.00818 * 14 12 2 32 32 H 1.09001 * 109.47287 * 300.00131 * 14 12 2 33 33 H 1.09005 * 110.38307 * 40.46433 * 16 15 14 34 34 H 1.09001 * 110.47912 * 278.13798 * 16 15 14 35 35 H 1.09002 * 110.38840 * 254.53690 * 19 17 16 36 36 H 1.09000 * 110.38832 * 16.80508 * 19 17 16 37 37 H 1.00897 * 111.00519 * 79.87243 * 20 19 17 38 38 H 1.08993 * 110.28757 * 280.77139 * 21 20 19 39 39 H 1.08997 * 110.41781 * 158.43768 * 21 20 19 40 40 H 1.08999 * 110.38699 * 319.53231 * 24 15 14 41 41 H 1.08998 * 110.38808 * 81.79604 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5526 3.6185 -0.6730 8 14 3.4379 3.4170 -3.4337 9 1 2.8607 2.4167 -4.3673 10 1 2.7998 4.7374 -3.6677 11 1 4.9005 3.5259 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1674 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 7 2.3398 -3.5889 -0.0005 16 6 1.6478 -4.8808 0.2402 17 6 2.6166 -5.9516 -0.3031 18 1 3.2044 -6.4186 0.4870 19 6 1.8114 -6.9810 -1.1230 20 7 2.6190 -7.2055 -2.3490 21 6 3.1292 -5.8545 -2.7005 22 6 3.4894 -5.2054 -1.3480 23 1 4.5539 -5.2641 -1.1207 24 6 2.9656 -3.7542 -1.3373 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 4.0295 4.4444 -0.8502 31 1 0.7584 -2.5299 -0.8904 32 1 0.7589 -2.5302 0.8897 33 1 0.7033 -4.9125 -0.3029 34 1 1.4771 -5.0291 1.3065 35 1 1.7031 -7.9106 -0.5641 36 1 0.8322 -6.5781 -1.3818 37 1 3.3802 -7.8428 -2.1690 38 1 2.3541 -5.2771 -3.2043 39 1 4.0146 -5.9346 -3.3311 40 1 2.2244 -3.6123 -2.1237 41 1 3.7888 -3.0505 -1.4609 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107576067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:01 Heat of formation + Delta-G solvation = -12.975574 kcal Electronic energy + Delta-G solvation = -20952.644784 eV Core-core repulsion = 17867.671192 eV Total energy + Delta-G solvation = -3084.973592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.33972 -38.72934 -35.90256 -34.65330 -32.61848 -30.90813 -30.69131 -28.12879 -26.42130 -25.90807 -25.35299 -22.78557 -22.09913 -21.12000 -19.59302 -18.30851 -17.22220 -16.53252 -16.25903 -15.70933 -15.36661 -14.89271 -14.82498 -14.58121 -14.07595 -13.47825 -13.19867 -13.00780 -12.54174 -12.30005 -12.16514 -12.15382 -12.11642 -11.79593 -11.35651 -11.26123 -11.17170 -11.04130 -10.91672 -10.81279 -10.70577 -10.57268 -10.14372 -9.59345 -8.96975 -8.91342 -8.43061 -8.24808 -7.59580 -6.03425 -4.08173 3.29667 3.36908 3.40209 3.49947 3.70875 3.97249 4.26259 4.36017 4.44768 4.47309 4.88939 4.97486 5.08450 5.13314 5.15539 5.27186 5.32226 5.36336 5.42517 5.49883 5.57632 5.66685 5.69159 5.70970 5.77729 5.92838 5.95544 6.07928 6.20140 6.26460 6.39153 6.87658 6.90816 7.05727 7.14928 7.47545 7.58100 7.93559 8.25037 8.46446 8.92478 9.17268 9.57106 11.04648 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.004448 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.932891 B = 6293.420266 C = 6903.695505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.246 3.754 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.523 6.523 14 C 0.026 3.974 15 N -0.490 5.490 16 C 0.039 3.961 17 C -0.124 4.124 18 H 0.089 0.911 19 C 0.043 3.957 20 N -0.670 5.670 21 C 0.043 3.957 22 C -0.123 4.123 23 H 0.090 0.910 24 C 0.044 3.956 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.336 0.664 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 -19.029 0.277 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.340 5.340 3 C 0.127 3.873 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.399 6.399 14 C -0.105 4.105 15 N -0.213 5.213 16 C -0.089 4.089 17 C -0.144 4.144 18 H 0.108 0.892 19 C -0.087 4.087 20 N -0.295 5.295 21 C -0.087 4.087 22 C -0.143 4.143 23 H 0.109 0.891 24 C -0.084 4.084 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.945 -18.766 0.215 19.686 hybrid contribution 0.094 0.607 -0.795 1.004 sum -5.851 -18.159 -0.579 19.087 Atomic orbital electron populations 1.21619 0.81675 1.02394 1.00323 1.48158 1.06023 1.07799 1.72035 1.19266 0.92566 0.78045 0.97418 1.21469 1.36386 1.06172 0.92336 0.92541 1.24938 0.95398 0.96410 0.97395 1.69945 1.38469 1.14325 1.30638 0.86451 0.78094 0.78291 0.84622 1.19865 1.20966 1.20852 1.20088 0.88248 0.84585 0.77955 1.90655 1.13620 1.86838 1.48771 1.22234 0.94530 0.91555 1.02225 1.65153 1.26655 1.01153 1.28378 1.23208 0.95235 0.89207 1.01235 1.23263 0.96818 0.96166 0.98181 0.89216 1.23195 0.97683 0.98212 0.89576 1.63365 1.24482 1.09549 1.32141 1.23222 1.00008 0.89604 0.95892 1.23274 1.00367 0.95529 0.95175 0.89119 1.23249 0.99783 0.96048 0.89322 0.93783 0.90772 0.92800 0.95080 0.93839 0.92782 0.92313 0.88693 0.93677 0.90206 0.90855 0.90195 0.84917 0.90055 0.90626 0.93931 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.95 16 2 N -0.61 -13.08 2.86 -182.95 -0.52 -13.60 16 3 C 0.25 6.55 5.16 -5.20 -0.03 6.53 16 4 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.51 10.76 7.52 -10.98 -0.08 10.68 16 13 O -0.52 -13.46 14.80 5.56 0.08 -13.38 16 14 C 0.03 0.41 3.87 -4.98 -0.02 0.39 16 15 N -0.49 -7.44 4.97 -231.60 -1.15 -8.59 16 16 C 0.04 0.44 5.99 -2.26 -0.01 0.43 16 17 C -0.12 -1.24 4.12 -88.08 -0.36 -1.60 16 18 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 19 C 0.04 0.38 7.00 -2.26 -0.02 0.36 16 20 N -0.67 -6.23 7.63 -109.75 -0.84 -7.07 16 21 C 0.04 0.43 7.01 -2.20 -0.02 0.42 16 22 C -0.12 -1.41 4.12 -88.08 -0.36 -1.77 16 23 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 24 C 0.04 0.65 5.47 -2.26 -0.01 0.64 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 27 H 0.05 0.70 6.44 -51.93 -0.33 0.36 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.06 0.82 7.03 -51.93 -0.36 0.46 16 32 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 33 H 0.05 0.46 7.01 -51.93 -0.36 0.10 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.73 7.15 -51.93 -0.37 0.36 16 37 H 0.34 2.62 8.92 -39.29 -0.35 2.27 16 38 H 0.08 0.89 7.15 -51.93 -0.37 0.52 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.61 6.76 -51.93 -0.35 0.26 16 41 H 0.10 1.73 7.22 -51.93 -0.38 1.36 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -33.58 324.03 -9.16 -42.74 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.61 Total: -0.15 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.72 Total: 4.30 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -1.78 Total: -55.37 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.58 -9.16 -42.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107576067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.765 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds