Wall clock time and date at job start Mon Mar 30 2020 04:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46493 * 120.00417 * 2 1 4 4 C 1.50699 * 109.47651 * 270.00722 * 3 2 1 5 5 H 1.08007 * 119.99548 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00550 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99691 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00306 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47452 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47190 * 119.99669 * 8 6 4 11 11 H 1.48500 * 109.47533 * 239.99910 * 8 6 4 12 12 C 1.34778 * 119.99816 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00421 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99843 * 359.97438 * 12 2 1 15 15 N 1.46902 * 109.46976 * 180.02562 * 14 12 2 16 16 C 1.48523 * 111.00299 * 170.00184 * 15 14 12 17 17 C 1.54279 * 104.71733 * 159.27750 * 16 15 14 18 18 H 1.08994 * 112.38289 * 99.15117 * 17 16 15 19 19 C 1.54289 * 108.81480 * 224.27563 * 17 16 15 20 20 N 1.48514 * 104.81552 * 135.67043 * 19 17 16 21 21 C 1.48628 * 104.15355 * 320.41896 * 20 19 17 22 22 C 1.54282 * 104.78697 * 39.57360 * 21 20 19 23 23 H 1.09007 * 112.84003 * 98.90120 * 22 21 20 24 24 C 1.48521 * 111.00316 * 285.40009 * 15 14 12 25 25 H 1.09003 * 109.46690 * 269.99393 * 1 2 3 26 26 H 1.09003 * 109.47127 * 29.99121 * 1 2 3 27 27 H 1.09003 * 109.47517 * 149.99518 * 1 2 3 28 28 H 1.09005 * 109.46767 * 30.00440 * 3 2 1 29 29 H 1.09003 * 109.47691 * 149.99995 * 3 2 1 30 30 H 0.96997 * 120.00039 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47188 * 60.00818 * 14 12 2 32 32 H 1.09001 * 109.47287 * 300.00131 * 14 12 2 33 33 H 1.09005 * 110.38307 * 40.46433 * 16 15 14 34 34 H 1.09001 * 110.47912 * 278.13798 * 16 15 14 35 35 H 1.09002 * 110.38840 * 254.53690 * 19 17 16 36 36 H 1.09000 * 110.38832 * 16.80508 * 19 17 16 37 37 H 1.00897 * 111.00519 * 79.87243 * 20 19 17 38 38 H 1.08993 * 110.28757 * 280.77139 * 21 20 19 39 39 H 1.08997 * 110.41781 * 158.43768 * 21 20 19 40 40 H 1.08999 * 110.38699 * 319.53231 * 24 15 14 41 41 H 1.08998 * 110.38808 * 81.79604 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5526 3.6185 -0.6730 8 14 3.4379 3.4170 -3.4337 9 1 2.8607 2.4167 -4.3673 10 1 2.7998 4.7374 -3.6677 11 1 4.9005 3.5259 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3516 -1.1674 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 7 2.3398 -3.5889 -0.0005 16 6 1.6478 -4.8808 0.2402 17 6 2.6166 -5.9516 -0.3031 18 1 3.2044 -6.4186 0.4870 19 6 1.8114 -6.9810 -1.1230 20 7 2.6190 -7.2055 -2.3490 21 6 3.1292 -5.8545 -2.7005 22 6 3.4894 -5.2054 -1.3480 23 1 4.5539 -5.2641 -1.1207 24 6 2.9656 -3.7542 -1.3373 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8901 -0.5137 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6085 2.0283 0.5139 29 1 3.1500 1.1383 0.5138 30 1 4.0295 4.4444 -0.8502 31 1 0.7584 -2.5299 -0.8904 32 1 0.7589 -2.5302 0.8897 33 1 0.7033 -4.9125 -0.3029 34 1 1.4771 -5.0291 1.3065 35 1 1.7031 -7.9106 -0.5641 36 1 0.8322 -6.5781 -1.3818 37 1 3.3802 -7.8428 -2.1690 38 1 2.3541 -5.2771 -3.2043 39 1 4.0146 -5.9346 -3.3311 40 1 2.2244 -3.6123 -2.1237 41 1 3.7888 -3.0505 -1.4609 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107576067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:00 Heat of formation + Delta-G solvation = -39.938580 kcal Electronic energy + Delta-G solvation = -20953.813987 eV Core-core repulsion = 17867.671192 eV Total energy + Delta-G solvation = -3086.142795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.36891 -40.25332 -37.01054 -36.38587 -34.74153 -32.02537 -31.55615 -29.95998 -27.72899 -27.00183 -26.77843 -24.61165 -22.91835 -22.29307 -20.51889 -19.87064 -18.71575 -18.12593 -17.67807 -17.20726 -16.65978 -16.37910 -16.00935 -15.82220 -15.53164 -14.72246 -14.44326 -14.23296 -14.03021 -13.73091 -13.52501 -13.44748 -13.21895 -13.12451 -12.94079 -12.81643 -12.57066 -12.48312 -12.22761 -12.06603 -11.87772 -11.78001 -11.68611 -11.60910 -10.66811 -10.57465 -9.72530 -9.41127 -9.37604 -8.24005 -6.39288 1.34385 1.36901 1.48600 1.86562 2.24411 2.40093 3.04702 3.05629 3.26198 3.44087 3.58718 3.81297 4.03433 4.10864 4.18339 4.27045 4.32878 4.37267 4.41364 4.46584 4.59333 4.71476 4.72067 4.81933 4.84968 4.93747 4.99466 5.01447 5.06944 5.12166 5.21436 5.29638 5.54915 5.64663 5.78979 5.83287 5.95241 6.04943 6.42576 6.69141 6.81175 7.27396 7.53261 8.83244 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.004448 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.932891 B = 6293.420266 C = 6903.695505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.582 6.582 14 C 0.042 3.958 15 N -0.518 5.518 16 C 0.042 3.958 17 C -0.118 4.118 18 H 0.096 0.904 19 C 0.050 3.950 20 N -0.673 5.673 21 C 0.049 3.951 22 C -0.120 4.120 23 H 0.082 0.918 24 C 0.046 3.954 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.023 0.977 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.345 0.655 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 -21.095 -0.525 22.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.347 5.347 3 C 0.139 3.861 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.192 1.192 10 H -0.192 1.192 11 H -0.207 1.207 12 C 0.282 3.718 13 O -0.462 6.462 14 C -0.089 4.089 15 N -0.243 5.243 16 C -0.085 4.085 17 C -0.138 4.138 18 H 0.115 0.885 19 C -0.080 4.080 20 N -0.299 5.299 21 C -0.082 4.082 22 C -0.141 4.141 23 H 0.100 0.900 24 C -0.082 4.082 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.041 0.959 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.145 0.855 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.054 -20.863 -0.578 22.371 hybrid contribution 0.746 1.249 -0.481 1.532 sum -7.308 -19.615 -1.059 20.959 Atomic orbital electron populations 1.21926 0.77896 1.03883 1.02623 1.48202 1.08395 1.06304 1.71824 1.18717 0.90991 0.80416 0.95969 1.21719 1.36825 1.06478 0.92982 0.93022 1.25877 0.94875 0.96410 1.02053 1.70063 1.38970 1.14824 1.33026 0.85351 0.77895 0.78446 0.79006 1.19150 1.19243 1.20742 1.21239 0.88020 0.86279 0.76268 1.90624 1.16476 1.87833 1.51218 1.22133 0.93943 0.88167 1.04649 1.65067 1.27850 1.02828 1.28505 1.23310 0.95764 0.87063 1.02383 1.23269 0.96497 0.96102 0.97947 0.88538 1.23196 0.97094 0.98659 0.89067 1.63352 1.24945 1.08936 1.32650 1.23113 1.00034 0.89966 0.95038 1.23231 1.00155 0.93761 0.96943 0.89962 1.23115 0.98476 0.96982 0.89638 0.90994 0.91578 0.89029 0.95899 0.98739 0.92378 0.90040 0.85507 0.91904 0.88950 0.88722 0.90179 0.83837 0.90839 0.90010 0.93631 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.66 16 2 N -0.61 -26.77 2.86 -851.13 -2.43 -29.20 16 3 C 0.26 14.50 5.16 85.63 0.44 14.94 16 4 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 5 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.39 5.46 84.65 0.46 0.85 16 7 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 8 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 C 0.49 21.32 7.52 87.66 0.66 21.98 16 13 O -0.58 -31.62 14.80 -3.03 -0.04 -31.67 16 14 C 0.04 1.23 3.87 85.56 0.33 1.56 16 15 N -0.52 -15.17 4.97 -886.65 -4.41 -19.58 16 16 C 0.04 0.81 5.99 86.42 0.52 1.33 16 17 C -0.12 -2.06 4.12 -9.15 -0.04 -2.10 16 18 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 19 C 0.05 0.69 7.00 86.43 0.61 1.30 16 20 N -0.67 -10.73 7.63 -501.15 -3.83 -14.55 16 21 C 0.05 0.92 7.01 86.40 0.61 1.52 16 22 C -0.12 -2.67 4.12 -9.15 -0.04 -2.70 16 23 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 24 C 0.05 1.38 5.47 86.42 0.47 1.85 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 27 H 0.09 2.03 6.44 -2.39 -0.02 2.02 16 28 H 0.02 1.29 8.07 -2.38 -0.02 1.27 16 29 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.08 2.02 7.03 -2.39 -0.02 2.00 16 32 H 0.13 2.87 8.05 -2.39 -0.02 2.86 16 33 H 0.06 1.02 7.01 -2.38 -0.02 1.00 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.15 7.15 -2.39 -0.02 1.13 16 37 H 0.35 4.46 8.92 -89.70 -0.80 3.66 16 38 H 0.07 1.51 7.15 -2.39 -0.02 1.50 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.29 6.76 -2.39 -0.02 1.28 16 41 H 0.05 1.87 7.22 -2.39 -0.02 1.86 16 Total: -1.00 -77.33 324.03 -2.61 -79.94 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.22 Total: 11.89 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.57 Total: 12.49 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -10.38 Total: -120.29 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.04 Total: -31.67 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -77.33 -2.61 -79.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107576067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.001 kcal (2) G-P(sol) polarization free energy of solvation -77.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds