Wall clock time and date at job start Mon Mar 30 2020 04:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99782 * 2 1 4 4 C 1.50703 * 109.47395 * 89.99766 * 3 2 1 5 5 H 1.07994 * 119.99603 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99848 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47261 * 239.99776 * 8 6 4 11 11 H 1.48500 * 109.47454 * 119.99769 * 8 6 4 12 12 C 1.34779 * 120.00109 * 179.97438 * 2 1 3 13 13 O 1.21276 * 119.99641 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99999 * 0.02562 * 12 2 1 15 15 N 1.46898 * 109.47235 * 179.97438 * 14 12 2 16 16 C 1.50184 * 110.99645 * 289.67828 * 15 14 12 17 17 C 1.50740 * 102.14368 * 213.03508 * 16 15 14 18 18 H 1.09006 * 110.05657 * 290.78401 * 17 16 15 19 19 C 1.50125 * 126.19598 * 154.77000 * 17 16 15 20 20 N 1.49703 * 104.74089 * 216.33571 * 19 17 16 21 21 C 1.50392 * 107.38740 * 6.85357 * 20 19 17 22 22 C 1.50749 * 102.04799 * 26.25104 * 21 20 19 23 23 H 1.09000 * 110.07096 * 68.20887 * 22 21 20 24 24 C 1.49697 * 111.00340 * 170.00077 * 15 14 12 25 25 H 1.08989 * 109.47094 * 90.00527 * 1 2 3 26 26 H 1.09002 * 109.46932 * 210.00276 * 1 2 3 27 27 H 1.09000 * 109.47143 * 330.00012 * 1 2 3 28 28 H 1.09005 * 109.47411 * 329.99700 * 3 2 1 29 29 H 1.08998 * 109.46900 * 209.99779 * 3 2 1 30 30 H 0.97001 * 119.99667 * 0.02562 * 7 6 4 31 31 H 1.09003 * 109.46998 * 299.99904 * 14 12 2 32 32 H 1.09004 * 109.47100 * 59.99261 * 14 12 2 33 33 H 1.09000 * 110.87152 * 331.20159 * 16 15 14 34 34 H 1.09010 * 110.86691 * 94.87727 * 16 15 14 35 35 H 1.08998 * 110.38525 * 335.15865 * 19 17 16 36 36 H 1.09002 * 110.38379 * 97.52509 * 19 17 16 37 37 H 1.00898 * 111.00655 * 245.78776 * 20 19 17 38 38 H 1.08992 * 111.36262 * 267.91442 * 21 20 19 39 39 H 1.09000 * 110.46454 * 144.18015 * 21 20 19 40 40 H 1.08998 * 110.38571 * 233.03482 * 24 15 14 41 41 H 1.09002 * 110.38469 * 355.28357 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0974 1.0963 2.2416 6 6 3.1259 2.8781 1.6727 7 7 3.5532 3.6182 0.6730 8 14 3.4378 3.4171 3.4338 9 1 2.8608 2.4166 4.3673 10 1 2.7997 4.7375 3.6678 11 1 4.9004 3.5260 3.6665 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 7 2.3401 -3.5888 0.0005 16 6 3.0487 -3.6910 -1.3197 17 6 3.2595 -5.1777 -1.4522 18 1 3.9906 -5.5184 -0.7189 19 6 3.4246 -5.9389 -2.7356 20 7 2.7259 -7.2414 -2.4986 21 6 2.0332 -7.1441 -1.1672 22 6 1.8109 -5.6589 -1.0361 23 1 1.0805 -5.3235 -1.7723 24 6 1.6427 -4.8910 0.2432 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6084 2.0284 -0.5139 29 1 3.1499 1.1384 -0.5138 30 1 3.3916 3.3381 -0.2415 31 1 0.7585 -2.5298 0.8903 32 1 0.7591 -2.5302 -0.8897 33 1 2.4211 -3.3144 -2.1274 34 1 4.0028 -3.1647 -1.2901 35 1 2.9555 -5.4007 -3.5592 36 1 4.4812 -6.1073 -2.9439 37 1 3.3806 -8.0092 -2.5037 38 1 2.6672 -7.5145 -0.3618 39 1 1.0833 -7.6781 -1.1919 40 1 2.1111 -5.4242 1.0704 41 1 0.5860 -4.7228 0.4508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107576077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:09 Heat of formation + Delta-G solvation = 5.085216 kcal Electronic energy + Delta-G solvation = -20887.273713 eV Core-core repulsion = 17803.083296 eV Total energy + Delta-G solvation = -3084.190417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73345 -38.86848 -36.07039 -34.80984 -32.84514 -30.96479 -30.57540 -27.87199 -26.61088 -26.48852 -25.21282 -23.02302 -21.84096 -20.59539 -20.26125 -18.66249 -17.06643 -16.80525 -16.31480 -15.82545 -15.38997 -15.21259 -14.80518 -14.22915 -13.80213 -13.70017 -13.33771 -13.11497 -12.81297 -12.58326 -12.44038 -12.22840 -12.07746 -11.93782 -11.56688 -11.45442 -11.34524 -11.15885 -10.93032 -10.87150 -10.55309 -10.30542 -10.11428 -9.10084 -8.98094 -8.89331 -8.36233 -8.26562 -7.59189 -6.36719 -4.08390 3.37656 3.45189 3.50247 3.54361 3.63558 3.70164 3.81375 4.15399 4.44765 4.55540 4.80550 4.99609 5.06391 5.08864 5.18388 5.23534 5.34763 5.36015 5.39409 5.41812 5.44134 5.59152 5.59994 5.65065 5.78000 5.83306 5.87187 6.05240 6.12076 6.18292 6.30474 6.72916 6.78783 6.93101 6.96850 7.14990 7.43133 8.06166 8.31862 8.46714 8.80457 9.07643 9.61418 11.00696 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.037012 B = 0.003856 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.339209 B = 7259.812467 C = 7337.175107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.603 5.603 3 C 0.237 3.763 4 C -0.605 4.605 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 1.078 2.922 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.286 1.286 12 C 0.506 3.494 13 O -0.523 6.523 14 C 0.032 3.968 15 N -0.504 5.504 16 C 0.069 3.931 17 C -0.141 4.141 18 H 0.083 0.917 19 C 0.061 3.939 20 N -0.680 5.680 21 C 0.063 3.937 22 C -0.143 4.143 23 H 0.081 0.919 24 C 0.060 3.940 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.020 0.980 29 H 0.033 0.967 30 H 0.268 0.732 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.337 0.663 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 -19.697 -4.626 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.336 5.336 3 C 0.117 3.883 4 C -0.643 4.643 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.548 5.548 8 Si 0.906 3.094 9 H -0.216 1.216 10 H -0.213 1.213 11 H -0.212 1.212 12 C 0.291 3.709 13 O -0.398 6.398 14 C -0.100 4.100 15 N -0.228 5.228 16 C -0.058 4.058 17 C -0.161 4.161 18 H 0.101 0.899 19 C -0.068 4.068 20 N -0.308 5.308 21 C -0.066 4.066 22 C -0.163 4.163 23 H 0.099 0.901 24 C -0.068 4.068 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.625 -18.232 -3.718 19.439 hybrid contribution -0.754 -1.323 -0.870 1.754 sum -6.380 -19.555 -4.588 21.075 Atomic orbital electron populations 1.21620 0.81431 1.02635 1.00247 1.47965 1.06043 1.07417 1.72209 1.19316 0.91923 0.78936 0.98120 1.22313 1.40571 1.09460 0.91999 0.92973 1.25820 0.93316 0.93348 1.06058 1.70745 1.44240 1.39704 1.00099 0.83425 0.76735 0.75433 0.73807 1.21597 1.21340 1.21203 1.20131 0.88261 0.84599 0.77862 1.90653 1.13634 1.86837 1.48712 1.22267 0.94356 0.91184 1.02145 1.64979 1.25425 1.01117 1.31281 1.22276 1.00498 0.93728 0.89326 1.22657 0.97634 0.96975 0.98817 0.89851 1.21844 0.97854 0.90303 0.96781 1.63793 1.31748 1.04749 1.30497 1.22102 0.99293 0.94911 0.90318 1.22592 0.98215 0.96077 0.99386 0.90083 1.22079 0.98235 0.90023 0.96461 0.93880 0.92504 0.90738 0.96189 0.94914 0.92215 0.88388 0.92615 0.93440 0.88578 0.90343 0.91909 0.84893 0.92996 0.90040 0.90016 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.97 16 2 N -0.60 -13.06 2.86 -182.95 -0.52 -13.59 16 3 C 0.24 6.28 4.47 -5.19 -0.02 6.25 16 4 C -0.60 -17.66 9.39 -34.44 -0.32 -17.99 16 5 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 6 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 7 N -0.91 -28.17 13.65 55.43 0.76 -27.41 16 8 Si 1.08 26.14 29.90 -169.99 -5.08 21.06 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.51 10.77 7.48 -10.99 -0.08 10.69 16 13 O -0.52 -13.42 14.75 5.56 0.08 -13.34 16 14 C 0.03 0.50 3.72 -4.98 -0.02 0.48 16 15 N -0.50 -7.60 4.97 -233.83 -1.16 -8.76 16 16 C 0.07 0.99 5.60 -3.11 -0.02 0.97 16 17 C -0.14 -1.58 2.89 -90.31 -0.26 -1.85 16 18 H 0.08 1.00 8.13 -51.93 -0.42 0.57 16 19 C 0.06 0.59 7.44 -3.69 -0.03 0.56 16 20 N -0.68 -6.10 7.60 -111.63 -0.85 -6.95 16 21 C 0.06 0.54 7.41 -2.99 -0.02 0.51 16 22 C -0.14 -1.44 2.93 -90.30 -0.26 -1.71 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 C 0.06 0.67 6.70 -3.68 -0.02 0.64 16 25 H 0.04 0.59 8.14 -51.94 -0.42 0.17 16 26 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 27 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.02 0.53 7.94 -51.93 -0.41 0.12 16 29 H 0.03 0.97 7.29 -51.93 -0.38 0.59 16 30 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 31 H 0.10 1.35 7.24 -51.93 -0.38 0.98 16 32 H 0.06 0.74 7.82 -51.93 -0.41 0.34 16 33 H 0.05 0.67 7.70 -51.93 -0.40 0.27 16 34 H 0.10 1.63 7.51 -51.92 -0.39 1.24 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.34 2.43 8.93 -39.29 -0.35 2.08 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.63 7.57 -51.93 -0.39 0.24 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -34.53 325.46 -9.16 -43.70 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.74 Total: -0.61 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.55 Total: 1.00 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -1.78 Total: -56.70 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.08 Total: 21.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.53 -9.16 -43.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107576077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.783 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds