Wall clock time and date at job start Mon Mar 30 2020 04:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46495 * 119.99782 * 2 1 4 4 C 1.50703 * 109.47395 * 89.99766 * 3 2 1 5 5 H 1.07994 * 119.99603 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99848 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47261 * 239.99776 * 8 6 4 11 11 H 1.48500 * 109.47454 * 119.99769 * 8 6 4 12 12 C 1.34779 * 120.00109 * 179.97438 * 2 1 3 13 13 O 1.21276 * 119.99641 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99999 * 0.02562 * 12 2 1 15 15 N 1.46898 * 109.47235 * 179.97438 * 14 12 2 16 16 C 1.50184 * 110.99645 * 289.67828 * 15 14 12 17 17 C 1.50740 * 102.14368 * 213.03508 * 16 15 14 18 18 H 1.09006 * 110.05657 * 290.78401 * 17 16 15 19 19 C 1.50125 * 126.19598 * 154.77000 * 17 16 15 20 20 N 1.49703 * 104.74089 * 216.33571 * 19 17 16 21 21 C 1.50392 * 107.38740 * 6.85357 * 20 19 17 22 22 C 1.50749 * 102.04799 * 26.25104 * 21 20 19 23 23 H 1.09000 * 110.07096 * 68.20887 * 22 21 20 24 24 C 1.49697 * 111.00340 * 170.00077 * 15 14 12 25 25 H 1.08989 * 109.47094 * 90.00527 * 1 2 3 26 26 H 1.09002 * 109.46932 * 210.00276 * 1 2 3 27 27 H 1.09000 * 109.47143 * 330.00012 * 1 2 3 28 28 H 1.09005 * 109.47411 * 329.99700 * 3 2 1 29 29 H 1.08998 * 109.46900 * 209.99779 * 3 2 1 30 30 H 0.97001 * 119.99667 * 0.02562 * 7 6 4 31 31 H 1.09003 * 109.46998 * 299.99904 * 14 12 2 32 32 H 1.09004 * 109.47100 * 59.99261 * 14 12 2 33 33 H 1.09000 * 110.87152 * 331.20159 * 16 15 14 34 34 H 1.09010 * 110.86691 * 94.87727 * 16 15 14 35 35 H 1.08998 * 110.38525 * 335.15865 * 19 17 16 36 36 H 1.09002 * 110.38379 * 97.52509 * 19 17 16 37 37 H 1.00898 * 111.00655 * 245.78776 * 20 19 17 38 38 H 1.08992 * 111.36262 * 267.91442 * 21 20 19 39 39 H 1.09000 * 110.46454 * 144.18015 * 21 20 19 40 40 H 1.08998 * 110.38571 * 233.03482 * 24 15 14 41 41 H 1.09002 * 110.38469 * 355.28357 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0974 1.0963 2.2416 6 6 3.1259 2.8781 1.6727 7 7 3.5532 3.6182 0.6730 8 14 3.4378 3.4171 3.4338 9 1 2.8608 2.4166 4.3673 10 1 2.7997 4.7375 3.6678 11 1 4.9004 3.5260 3.6665 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 7 2.3401 -3.5888 0.0005 16 6 3.0487 -3.6910 -1.3197 17 6 3.2595 -5.1777 -1.4522 18 1 3.9906 -5.5184 -0.7189 19 6 3.4246 -5.9389 -2.7356 20 7 2.7259 -7.2414 -2.4986 21 6 2.0332 -7.1441 -1.1672 22 6 1.8109 -5.6589 -1.0361 23 1 1.0805 -5.3235 -1.7723 24 6 1.6427 -4.8910 0.2432 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6084 2.0284 -0.5139 29 1 3.1499 1.1384 -0.5138 30 1 3.3916 3.3381 -0.2415 31 1 0.7585 -2.5298 0.8903 32 1 0.7591 -2.5302 -0.8897 33 1 2.4211 -3.3144 -2.1274 34 1 4.0028 -3.1647 -1.2901 35 1 2.9555 -5.4007 -3.5592 36 1 4.4812 -6.1073 -2.9439 37 1 3.3806 -8.0092 -2.5037 38 1 2.6672 -7.5145 -0.3618 39 1 1.0833 -7.6781 -1.1919 40 1 2.1111 -5.4242 1.0704 41 1 0.5860 -4.7228 0.4508 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107576077.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:08 Heat of formation + Delta-G solvation = -22.596926 kcal Electronic energy + Delta-G solvation = -20888.474101 eV Core-core repulsion = 17803.083296 eV Total energy + Delta-G solvation = -3085.390805 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.71015 -40.44113 -37.17814 -36.55007 -34.96772 -32.08874 -31.43099 -29.64187 -27.82186 -27.43241 -26.86161 -24.88322 -23.05023 -21.47618 -21.11287 -20.27729 -19.06186 -18.21544 -17.49261 -17.01104 -16.66812 -16.55173 -16.01503 -15.69890 -15.32668 -15.08502 -14.60993 -14.26273 -14.06326 -13.87313 -13.66587 -13.60069 -13.47911 -13.30074 -12.98302 -12.85896 -12.73023 -12.49669 -12.42920 -12.09259 -11.97224 -11.83830 -11.20566 -11.18674 -10.63918 -10.63152 -9.61253 -9.48718 -9.34046 -8.70824 -6.46910 1.48062 1.58748 1.74393 1.77795 2.14034 2.52055 2.79418 2.91575 3.08362 3.13140 3.57825 3.72944 3.95665 4.10203 4.16383 4.22861 4.28486 4.32571 4.37096 4.42729 4.57534 4.58220 4.69150 4.73431 4.73957 4.79994 4.86165 4.92065 4.95674 5.00221 5.09476 5.24511 5.53017 5.58108 5.72159 5.80738 5.84192 6.14115 6.35536 6.43552 6.68830 7.28706 7.43807 8.63653 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.037012 B = 0.003856 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.339209 B = 7259.812467 C = 7337.175107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.247 3.753 4 C -0.616 4.616 5 H 0.044 0.956 6 C -0.033 4.033 7 N -0.932 5.932 8 Si 1.125 2.875 9 H -0.274 1.274 10 H -0.268 1.268 11 H -0.283 1.283 12 C 0.494 3.506 13 O -0.581 6.581 14 C 0.049 3.951 15 N -0.534 5.534 16 C 0.072 3.928 17 C -0.138 4.138 18 H 0.074 0.926 19 C 0.065 3.935 20 N -0.683 5.683 21 C 0.066 3.934 22 C -0.129 4.129 23 H 0.078 0.922 24 C 0.063 3.937 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.018 0.982 29 H -0.010 1.010 30 H 0.255 0.745 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.348 0.652 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 -21.750 -3.719 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.125 3.875 4 C -0.654 4.654 5 H 0.063 0.937 6 C -0.231 4.231 7 N -0.569 5.569 8 Si 0.946 3.054 9 H -0.199 1.199 10 H -0.193 1.193 11 H -0.209 1.209 12 C 0.282 3.718 13 O -0.460 6.460 14 C -0.083 4.083 15 N -0.259 5.259 16 C -0.056 4.056 17 C -0.158 4.158 18 H 0.093 0.907 19 C -0.065 4.065 20 N -0.313 5.313 21 C -0.062 4.062 22 C -0.149 4.149 23 H 0.096 0.904 24 C -0.063 4.063 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.008 0.992 30 H 0.064 0.936 31 H 0.142 0.858 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.163 0.837 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.816 -20.324 -2.831 21.959 hybrid contribution -0.088 -0.707 -1.203 1.398 sum -7.904 -21.031 -4.034 22.827 Atomic orbital electron populations 1.21938 0.77692 1.04116 1.02562 1.48051 1.08394 1.05928 1.72044 1.18837 0.90801 0.81463 0.96368 1.22588 1.40465 1.09473 0.92906 0.93742 1.27399 0.92591 0.93637 1.09477 1.70869 1.45634 1.40434 0.99984 0.82841 0.76994 0.76322 0.69259 1.19938 1.19287 1.20853 1.21312 0.88057 0.86281 0.76151 1.90624 1.16453 1.87812 1.51120 1.22169 0.93767 0.87728 1.04593 1.64852 1.26587 1.02772 1.31683 1.22079 0.98691 0.95438 0.89387 1.22532 0.98691 0.94882 0.99741 0.90721 1.21800 0.98533 0.90485 0.95646 1.63791 1.32016 1.04569 1.30883 1.22142 1.00091 0.93694 0.90300 1.22530 0.96739 0.97059 0.98543 0.90407 1.22115 0.99187 0.88055 0.96974 0.91084 0.88605 0.91685 0.96391 0.99172 0.93555 0.85821 0.89629 0.93440 0.92656 0.90885 0.91060 0.83657 0.92124 0.88656 0.89601 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.35 10.24 127.77 1.31 3.65 16 2 N -0.61 -26.54 2.86 -851.13 -2.43 -28.97 16 3 C 0.25 13.62 4.47 85.63 0.38 14.00 16 4 C -0.62 -36.76 9.39 25.60 0.24 -36.52 16 5 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 6 C -0.03 -1.98 5.46 84.65 0.46 -1.51 16 7 N -0.93 -59.05 13.65 21.45 0.29 -58.76 16 8 Si 1.12 52.43 29.90 68.60 2.05 54.48 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 C 0.49 21.15 7.48 87.66 0.66 21.81 16 13 O -0.58 -31.26 14.75 -3.02 -0.04 -31.31 16 14 C 0.05 1.39 3.72 85.56 0.32 1.71 16 15 N -0.53 -15.48 4.97 -893.70 -4.44 -19.92 16 16 C 0.07 2.08 5.60 84.93 0.48 2.56 16 17 C -0.14 -3.00 2.89 -10.59 -0.03 -3.03 16 18 H 0.07 1.75 8.13 -2.38 -0.02 1.73 16 19 C 0.06 1.16 7.44 84.83 0.63 1.79 16 20 N -0.68 -10.59 7.60 -507.10 -3.85 -14.44 16 21 C 0.07 0.93 7.41 84.89 0.63 1.56 16 22 C -0.13 -2.27 2.93 -10.58 -0.03 -2.30 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 C 0.06 1.23 6.70 84.84 0.57 1.80 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.10 2.10 6.44 -2.39 -0.02 2.08 16 27 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 28 H 0.02 0.99 7.94 -2.38 -0.02 0.97 16 29 H -0.01 -0.61 7.29 -2.39 -0.02 -0.63 16 30 H 0.26 16.36 7.22 -92.71 -0.67 15.69 16 31 H 0.12 2.92 7.24 -2.39 -0.02 2.90 16 32 H 0.09 1.97 7.82 -2.39 -0.02 1.95 16 33 H 0.05 1.34 7.70 -2.39 -0.02 1.32 16 34 H 0.05 2.03 7.51 -2.38 -0.02 2.01 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.35 4.15 8.93 -89.70 -0.80 3.35 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.32 7.57 -2.39 -0.02 1.30 16 Total: -1.00 -78.85 325.46 -2.51 -81.35 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.31 Total: 12.04 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.61 Total: 5.53 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -10.43 Total: -122.09 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.04 Total: -31.31 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.05 Total: 54.48 kcal Total: -78.85 -2.51 -81.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107576077.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.756 kcal (2) G-P(sol) polarization free energy of solvation -78.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds