Wall clock time and date at job start Mon Mar 30 2020 04:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 119.99460 * 2 1 4 4 N 1.46506 * 109.46774 * 125.00591 * 3 2 1 5 5 C 1.34781 * 119.99899 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99910 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99919 * 179.97438 * 5 4 3 8 8 H 1.09006 * 109.47095 * 32.31232 * 7 5 4 9 9 C 1.52997 * 109.47152 * 272.31101 * 7 5 4 10 10 N 1.46898 * 109.46873 * 152.30768 * 7 5 4 11 11 C 1.46896 * 111.00376 * 298.49247 * 10 7 5 12 12 C 1.53239 * 109.34403 * 172.74510 * 11 10 7 13 13 N 1.47087 * 108.51850 * 53.83367 * 12 11 10 14 14 C 1.36935 * 120.88174 * 128.79635 * 13 12 11 15 15 H 1.07992 * 119.99690 * 332.13154 * 14 13 12 16 16 C 1.38812 * 119.99977 * 152.13524 * 14 13 12 17 17 N 1.31614 * 119.99718 * 162.40954 * 16 14 13 18 18 Si 1.86801 * 119.99988 * 342.41234 * 16 14 13 19 19 H 1.48497 * 109.47237 * 93.11677 * 18 16 14 20 20 H 1.48496 * 109.47087 * 213.11965 * 18 16 14 21 21 H 1.48500 * 109.46990 * 333.11457 * 18 16 14 22 22 C 1.47083 * 118.23353 * 308.81727 * 13 12 11 23 23 C 1.46903 * 110.99937 * 174.19056 * 10 7 5 24 24 H 1.07994 * 120.00400 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99355 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00136 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47702 * 5.00353 * 3 2 1 28 28 H 1.08999 * 109.47180 * 244.99703 * 3 2 1 29 29 H 0.96992 * 119.99991 * 359.97438 * 4 3 2 30 30 H 1.09005 * 109.46848 * 179.97438 * 9 7 5 31 31 H 1.08997 * 109.46785 * 299.99649 * 9 7 5 32 32 H 1.08998 * 109.47308 * 60.00200 * 9 7 5 33 33 H 1.09005 * 109.49064 * 52.78651 * 11 10 7 34 34 H 1.09000 * 109.49437 * 292.70913 * 11 10 7 35 35 H 1.08997 * 109.63130 * 173.54080 * 12 11 10 36 36 H 1.08996 * 109.62658 * 294.12781 * 12 11 10 37 37 H 0.97002 * 120.00073 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.62521 * 170.89523 * 22 13 12 39 39 H 1.09004 * 109.62573 * 291.47376 * 22 13 12 40 40 H 1.09004 * 109.48981 * 67.29356 * 23 10 7 41 41 H 1.08995 * 109.51778 * 307.23139 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7782 2.4091 1.3335 6 8 3.7143 3.3561 0.5784 7 6 4.7348 2.4368 2.4976 8 1 5.0899 1.4263 2.7003 9 6 4.0179 2.9830 3.7339 10 7 5.8772 3.3011 2.1721 11 6 6.6122 2.7865 1.0091 12 6 7.6791 3.8043 0.5919 13 7 8.5104 4.1169 1.7644 14 6 9.8762 4.0449 1.6970 15 1 10.3474 3.3666 1.0012 16 6 10.6549 4.8437 2.5230 17 7 11.9224 4.5483 2.7196 18 14 9.9040 6.3377 3.3557 19 1 9.4178 5.9593 4.7068 20 1 10.9306 7.4035 3.4796 21 1 8.7667 6.8382 2.5425 22 6 7.8356 4.5083 3.0113 23 6 6.7625 3.4629 3.3331 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 3.0446 0.5747 1.7354 30 1 4.7097 3.0027 4.5760 31 1 3.6629 3.9935 3.5312 32 1 3.1703 2.3417 3.9754 33 1 5.9195 2.6263 0.1828 34 1 7.0918 1.8431 1.2702 35 1 8.3018 3.3801 -0.1957 36 1 7.1971 4.7132 0.2320 37 1 12.4665 5.1063 3.2971 38 1 8.5618 4.5496 3.8232 39 1 7.3687 5.4850 2.8838 40 1 7.2400 2.5101 3.5619 41 1 6.1793 3.7930 4.1927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109444267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:53 Heat of formation + Delta-G solvation = 29.246177 kcal Electronic energy + Delta-G solvation = -21010.647550 eV Core-core repulsion = 17927.504830 eV Total energy + Delta-G solvation = -3083.142719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11143 -38.04216 -35.96699 -34.83470 -33.02624 -31.95195 -30.56664 -30.12288 -26.77255 -26.31209 -23.82611 -23.01499 -21.82867 -20.78919 -19.86430 -19.33862 -17.18704 -17.03699 -16.36082 -15.69461 -15.53607 -14.79381 -14.56899 -14.38653 -14.02838 -13.92430 -13.65968 -13.41093 -12.92210 -12.74939 -12.56955 -12.35072 -12.09931 -11.78014 -11.60010 -11.52709 -11.37121 -10.90793 -10.57721 -10.25093 -10.16077 -9.97320 -9.78712 -9.55398 -9.38034 -9.16185 -8.62292 -7.96343 -6.88419 -5.89523 -3.26968 1.68688 2.67184 3.14920 3.35858 3.53434 3.59155 4.15880 4.40937 4.57961 4.67696 4.73892 5.03873 5.07206 5.09514 5.23259 5.36771 5.42928 5.46372 5.49302 5.65709 5.76026 5.80312 5.97357 6.01340 6.06724 6.11465 6.12278 6.16322 6.30535 6.36270 6.43340 6.61347 6.72835 6.97210 7.23568 7.47387 7.50371 8.00756 8.25767 8.37723 8.98286 9.76612 10.17208 11.26714 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.042243 B = 0.004200 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.665968 B = 6664.651608 C = 6939.218040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.174 4.174 3 C 0.147 3.853 4 N -0.735 5.735 5 C 0.519 3.481 6 O -0.513 6.513 7 C 0.066 3.934 8 H 0.054 0.946 9 C -0.142 4.142 10 N -0.512 5.512 11 C 0.043 3.957 12 C 0.155 3.845 13 N -0.610 5.610 14 C -0.257 4.257 15 H 0.085 0.915 16 C 0.020 3.980 17 N -0.914 5.914 18 Si 0.886 3.114 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.266 1.266 22 C 0.130 3.870 23 C 0.040 3.960 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.399 0.601 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.030 0.970 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.782 -9.835 -0.292 23.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.024 3.976 4 N -0.390 5.390 5 C 0.304 3.696 6 O -0.386 6.386 7 C -0.046 4.046 8 H 0.071 0.929 9 C -0.200 4.200 10 N -0.238 5.238 11 C -0.086 4.086 12 C 0.029 3.971 13 N -0.334 5.334 14 C -0.385 4.385 15 H 0.103 0.897 16 C -0.178 4.178 17 N -0.558 5.558 18 Si 0.717 3.283 19 H -0.217 1.217 20 H -0.233 1.233 21 H -0.191 1.191 22 C 0.004 3.996 23 C -0.089 4.089 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.133 0.867 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.233 0.767 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.814 -8.599 -0.937 23.466 hybrid contribution -0.006 -0.485 0.996 1.108 sum -21.820 -9.084 0.059 23.635 Atomic orbital electron populations 1.23971 0.95783 1.02366 0.98540 1.23038 0.96239 0.98218 1.01733 1.20370 0.91846 0.95315 0.90103 1.46065 1.41720 1.20269 1.30910 1.20643 0.80757 0.82011 0.86194 1.90720 1.66826 1.34869 1.46161 1.21563 0.92683 0.96741 0.93657 0.92855 1.21836 0.99993 1.02349 0.95835 1.61748 1.08278 1.47516 1.06232 1.22669 0.96114 0.97444 0.92418 1.20964 0.90741 0.95530 0.89865 1.44428 1.02836 1.80650 1.05495 1.18945 0.79255 1.18027 1.22255 0.89716 1.25296 0.95044 0.98303 0.99179 1.69805 1.06945 1.39350 1.39673 0.86906 0.78150 0.84236 0.78975 1.21702 1.23289 1.19126 1.21462 0.92954 0.95143 0.90034 1.22786 0.94239 1.00004 0.91843 0.88174 0.87940 0.86693 0.91184 0.90673 0.76714 0.90837 0.90967 0.92148 0.91380 0.95199 0.91716 0.94857 0.92828 0.90794 0.94623 0.94586 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 14.32 29.01 0.42 -0.56 16 2 C -0.17 -1.15 9.63 -36.03 -0.35 -1.50 16 3 C 0.15 1.35 6.11 -5.19 -0.03 1.32 16 4 N -0.74 -7.35 5.55 -61.47 -0.34 -7.69 16 5 C 0.52 7.24 5.90 -10.98 -0.06 7.17 16 6 O -0.51 -9.33 15.74 5.55 0.09 -9.24 16 7 C 0.07 0.90 2.47 -68.87 -0.17 0.73 16 8 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 9 C -0.14 -1.62 8.77 37.16 0.33 -1.29 16 10 N -0.51 -9.08 4.20 -227.74 -0.96 -10.04 16 11 C 0.04 0.79 5.34 -3.70 -0.02 0.77 16 12 C 0.16 3.37 6.69 -3.60 -0.02 3.34 16 13 N -0.61 -15.27 2.81 -172.01 -0.48 -15.75 16 14 C -0.26 -7.39 10.09 -15.06 -0.15 -7.54 16 15 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 16 C 0.02 0.60 5.29 -17.43 -0.09 0.50 16 17 N -0.91 -28.54 13.97 55.49 0.78 -27.77 16 18 Si 0.89 23.02 24.28 -169.99 -4.13 18.90 16 19 H -0.29 -7.15 6.67 56.52 0.38 -6.78 16 20 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 21 H -0.27 -6.90 6.32 56.52 0.36 -6.54 16 22 C 0.13 2.96 4.32 -3.60 -0.02 2.95 16 23 C 0.04 0.74 5.28 -3.70 -0.02 0.72 16 24 H 0.10 0.56 7.84 -52.49 -0.41 0.15 16 25 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 26 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 27 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.40 2.91 8.46 -40.82 -0.35 2.57 16 30 H 0.07 0.80 6.17 -51.93 -0.32 0.48 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.22 6.36 -51.93 -0.33 0.89 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 1.36 7.95 -51.93 -0.41 0.95 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.07 1.79 4.62 -51.93 -0.24 1.55 16 39 H 0.04 0.84 6.74 -51.93 -0.35 0.49 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 1.14 5.80 -51.93 -0.30 0.84 16 LS Contribution 322.08 15.07 4.85 4.85 Total: -1.00 -34.22 322.08 -6.94 -41.15 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.55 Total: -1.04 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.20 Total: 6.62 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -1.01 Total: -61.25 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.13 Total: 18.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.22 -6.94 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.400 kcal (2) G-P(sol) polarization free energy of solvation -34.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds