Wall clock time and date at job start Mon Mar 30 2020 04:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50695 * 119.99460 * 2 1 4 4 N 1.46506 * 109.46774 * 125.00591 * 3 2 1 5 5 C 1.34781 * 119.99899 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99910 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99919 * 179.97438 * 5 4 3 8 8 H 1.09006 * 109.47095 * 32.31232 * 7 5 4 9 9 C 1.52997 * 109.47152 * 272.31101 * 7 5 4 10 10 N 1.46898 * 109.46873 * 152.30768 * 7 5 4 11 11 C 1.46896 * 111.00376 * 298.49247 * 10 7 5 12 12 C 1.53239 * 109.34403 * 172.74510 * 11 10 7 13 13 N 1.47087 * 108.51850 * 53.83367 * 12 11 10 14 14 C 1.36935 * 120.88174 * 128.79635 * 13 12 11 15 15 H 1.07992 * 119.99690 * 332.13154 * 14 13 12 16 16 C 1.38812 * 119.99977 * 152.13524 * 14 13 12 17 17 N 1.31614 * 119.99718 * 162.40954 * 16 14 13 18 18 Si 1.86801 * 119.99988 * 342.41234 * 16 14 13 19 19 H 1.48497 * 109.47237 * 93.11677 * 18 16 14 20 20 H 1.48496 * 109.47087 * 213.11965 * 18 16 14 21 21 H 1.48500 * 109.46990 * 333.11457 * 18 16 14 22 22 C 1.47083 * 118.23353 * 308.81727 * 13 12 11 23 23 C 1.46903 * 110.99937 * 174.19056 * 10 7 5 24 24 H 1.07994 * 120.00400 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99355 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00136 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47702 * 5.00353 * 3 2 1 28 28 H 1.08999 * 109.47180 * 244.99703 * 3 2 1 29 29 H 0.96992 * 119.99991 * 359.97438 * 4 3 2 30 30 H 1.09005 * 109.46848 * 179.97438 * 9 7 5 31 31 H 1.08997 * 109.46785 * 299.99649 * 9 7 5 32 32 H 1.08998 * 109.47308 * 60.00200 * 9 7 5 33 33 H 1.09005 * 109.49064 * 52.78651 * 11 10 7 34 34 H 1.09000 * 109.49437 * 292.70913 * 11 10 7 35 35 H 1.08997 * 109.63130 * 173.54080 * 12 11 10 36 36 H 1.08996 * 109.62658 * 294.12781 * 12 11 10 37 37 H 0.97002 * 120.00073 * 180.02562 * 17 16 14 38 38 H 1.09004 * 109.62521 * 170.89523 * 22 13 12 39 39 H 1.09004 * 109.62573 * 291.47376 * 22 13 12 40 40 H 1.09004 * 109.48981 * 67.29356 * 23 10 7 41 41 H 1.08995 * 109.51778 * 307.23139 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7782 2.4091 1.3335 6 8 3.7143 3.3561 0.5784 7 6 4.7348 2.4368 2.4976 8 1 5.0899 1.4263 2.7003 9 6 4.0179 2.9830 3.7339 10 7 5.8772 3.3011 2.1721 11 6 6.6122 2.7865 1.0091 12 6 7.6791 3.8043 0.5919 13 7 8.5104 4.1169 1.7644 14 6 9.8762 4.0449 1.6970 15 1 10.3474 3.3666 1.0012 16 6 10.6549 4.8437 2.5230 17 7 11.9224 4.5483 2.7196 18 14 9.9040 6.3377 3.3557 19 1 9.4178 5.9593 4.7068 20 1 10.9306 7.4035 3.4796 21 1 8.7667 6.8382 2.5425 22 6 7.8356 4.5083 3.0113 23 6 6.7625 3.4629 3.3331 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9313 29 1 3.0446 0.5747 1.7354 30 1 4.7097 3.0027 4.5760 31 1 3.6629 3.9935 3.5312 32 1 3.1703 2.3417 3.9754 33 1 5.9195 2.6263 0.1828 34 1 7.0918 1.8431 1.2702 35 1 8.3018 3.3801 -0.1957 36 1 7.1971 4.7132 0.2320 37 1 12.4665 5.1063 3.2971 38 1 8.5618 4.5496 3.8232 39 1 7.3687 5.4850 2.8838 40 1 7.2400 2.5101 3.5619 41 1 6.1793 3.7930 4.1927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109444267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:53 Heat of formation + Delta-G solvation = 2.558643 kcal Electronic energy + Delta-G solvation = -21011.804808 eV Core-core repulsion = 17927.504830 eV Total energy + Delta-G solvation = -3084.299977 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25458 -39.48874 -36.90744 -36.37126 -34.12358 -33.58304 -32.22472 -31.56938 -28.06179 -27.53912 -25.20913 -24.81079 -23.25090 -21.61232 -21.21023 -20.49746 -18.88018 -18.21031 -17.69669 -17.07992 -16.54491 -16.20235 -15.95194 -15.80064 -15.61382 -15.45994 -14.75686 -14.51188 -14.35726 -14.17789 -13.97120 -13.63595 -13.52970 -13.16956 -12.87957 -12.73585 -12.56268 -12.29700 -12.08587 -12.04610 -11.83050 -11.56959 -11.48813 -10.94496 -10.75485 -10.45098 -10.03423 -9.36892 -8.90405 -8.17610 -5.52421 1.17416 1.28387 1.42032 1.52175 1.60624 2.24744 2.40390 2.87476 3.08169 3.30712 3.74261 3.87767 4.03540 4.09919 4.10164 4.16776 4.18045 4.42705 4.46462 4.48918 4.57129 4.64930 4.68725 4.72732 4.76933 4.91115 4.92899 4.98497 5.01127 5.21871 5.25725 5.37764 5.65015 5.78505 5.81003 5.99281 6.04471 6.13097 6.58743 6.86937 7.27790 7.57726 8.01722 9.02316 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.042243 B = 0.004200 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.665968 B = 6664.651608 C = 6939.218040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.181 4.181 3 C 0.146 3.854 4 N -0.716 5.716 5 C 0.518 3.482 6 O -0.563 6.563 7 C 0.064 3.936 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.529 5.529 11 C 0.059 3.941 12 C 0.151 3.849 13 N -0.623 5.623 14 C -0.250 4.250 15 H 0.053 0.947 16 C -0.034 4.034 17 N -0.959 5.959 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.310 1.310 21 H -0.267 1.267 22 C 0.123 3.877 23 C 0.052 3.948 24 H 0.099 0.901 25 H 0.121 0.879 26 H 0.129 0.871 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.415 0.585 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.061 0.939 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.060 0.940 39 H 0.031 0.969 40 H 0.035 0.965 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.702 -11.025 1.103 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.023 3.977 4 N -0.370 5.370 5 C 0.304 3.696 6 O -0.440 6.440 7 C -0.047 4.047 8 H 0.096 0.904 9 C -0.196 4.196 10 N -0.255 5.255 11 C -0.070 4.070 12 C 0.026 3.974 13 N -0.348 5.348 14 C -0.379 4.379 15 H 0.071 0.929 16 C -0.229 4.229 17 N -0.605 5.605 18 Si 0.780 3.220 19 H -0.192 1.192 20 H -0.239 1.239 21 H -0.192 1.192 22 C -0.002 4.002 23 C -0.077 4.077 24 H 0.117 0.883 25 H 0.139 0.861 26 H 0.147 0.853 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.801 -9.849 0.478 26.690 hybrid contribution 0.811 -0.200 0.467 0.957 sum -23.990 -10.049 0.944 26.027 Atomic orbital electron populations 1.24170 0.95550 1.03264 0.96629 1.22931 0.96407 0.97240 1.03360 1.20397 0.91480 0.96728 0.89096 1.45928 1.40486 1.19586 1.30988 1.20758 0.80985 0.82111 0.85763 1.90707 1.68527 1.36887 1.47922 1.21708 0.91169 0.97349 0.94501 0.90360 1.21849 1.01044 1.01985 0.94693 1.61630 1.08863 1.49403 1.05599 1.22376 0.95230 0.96034 0.93404 1.21057 0.91202 0.96128 0.89026 1.44549 1.01814 1.80944 1.07493 1.18878 0.81273 1.16842 1.20935 0.92947 1.25910 0.95437 1.00837 1.00690 1.69927 1.08509 1.40625 1.41431 0.85871 0.76913 0.80188 0.79068 1.19230 1.23933 1.19238 1.21508 0.93754 0.96504 0.88444 1.22592 0.93555 0.98427 0.93094 0.88256 0.86091 0.85310 0.92041 0.92130 0.74780 0.89926 0.92635 0.88984 0.90701 0.95114 0.92094 0.95710 0.92823 0.92215 0.95113 0.94638 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 14.32 67.78 0.97 -0.41 16 2 C -0.18 -1.93 9.63 25.64 0.25 -1.68 16 3 C 0.15 2.46 6.11 85.63 0.52 2.98 16 4 N -0.72 -12.51 5.55 -466.78 -2.59 -15.10 16 5 C 0.52 13.39 5.90 87.66 0.52 13.91 16 6 O -0.56 -20.09 15.74 -3.04 -0.05 -20.13 16 7 C 0.06 1.55 2.47 44.17 0.11 1.66 16 8 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 9 C -0.14 -2.61 8.77 71.98 0.63 -1.97 16 10 N -0.53 -17.66 4.20 -874.42 -3.68 -21.33 16 11 C 0.06 2.13 5.34 86.38 0.46 2.59 16 12 C 0.15 6.61 6.69 86.35 0.58 7.19 16 13 N -0.62 -31.28 2.81 -698.12 -1.96 -33.24 16 14 C -0.25 -14.73 10.09 84.03 0.85 -13.88 16 15 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 16 C -0.03 -2.05 5.29 84.86 0.45 -1.60 16 17 N -0.96 -61.26 13.97 21.65 0.30 -60.96 16 18 Si 0.95 48.07 24.28 68.60 1.67 49.73 16 19 H -0.27 -12.35 6.67 99.48 0.66 -11.69 16 20 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 21 H -0.27 -13.42 6.32 99.48 0.63 -12.79 16 22 C 0.12 5.45 4.32 86.35 0.37 5.82 16 23 C 0.05 1.78 5.28 86.38 0.46 2.23 16 24 H 0.10 0.88 7.84 -2.91 -0.02 0.86 16 25 H 0.12 0.64 8.06 -2.91 -0.02 0.62 16 26 H 0.13 1.04 8.06 -2.91 -0.02 1.01 16 27 H 0.06 1.15 7.79 -2.39 -0.02 1.13 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.42 4.56 8.46 -92.71 -0.78 3.78 16 30 H 0.08 1.42 6.17 -2.38 -0.01 1.40 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 33 H 0.07 2.62 6.36 -2.38 -0.02 2.61 16 34 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 2.64 7.95 -2.39 -0.02 2.62 16 36 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 38 H 0.06 2.81 4.62 -2.38 -0.01 2.79 16 39 H 0.03 1.40 6.74 -2.38 -0.02 1.39 16 40 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.11 2.93 5.80 -2.39 -0.01 2.91 16 Total: -1.00 -75.73 322.08 -0.04 -75.77 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.11 Total: 8.44 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.16 Total: 16.83 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -7.93 Total: -130.64 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.67 Total: 49.73 kcal Total: -75.73 -0.04 -75.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.326 kcal (2) G-P(sol) polarization free energy of solvation -75.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds