Wall clock time and date at job start Mon Mar 30 2020 04:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00101 * 2 1 4 4 N 1.46500 * 109.47269 * 125.00036 * 3 2 1 5 5 C 1.34774 * 119.99865 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99941 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99876 * 180.02562 * 5 4 3 8 8 H 1.09005 * 109.46733 * 300.00330 * 7 5 4 9 9 C 1.53002 * 109.47028 * 60.00037 * 7 5 4 10 10 N 1.46897 * 109.47181 * 180.02562 * 7 5 4 11 11 C 1.46902 * 111.00053 * 299.30309 * 10 7 5 12 12 C 1.53238 * 109.33991 * 172.74462 * 11 10 7 13 13 N 1.47087 * 108.51904 * 53.83075 * 12 11 10 14 14 C 1.36940 * 120.87864 * 128.83606 * 13 12 11 15 15 H 1.07997 * 119.99458 * 206.62368 * 14 13 12 16 16 C 1.38814 * 120.00236 * 26.62229 * 14 13 12 17 17 N 1.31616 * 119.99719 * 17.04268 * 16 14 13 18 18 Si 1.86796 * 120.00210 * 197.03867 * 16 14 13 19 19 H 1.48500 * 109.46914 * 59.99715 * 18 16 14 20 20 H 1.48497 * 109.47336 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47059 * 300.00322 * 18 16 14 22 22 C 1.47079 * 118.23676 * 308.81146 * 13 12 11 23 23 C 1.46895 * 111.00009 * 174.99863 * 10 7 5 24 24 H 1.07998 * 120.00220 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00132 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00358 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46825 * 5.00180 * 3 2 1 28 28 H 1.08997 * 109.47209 * 245.00751 * 3 2 1 29 29 H 0.97000 * 120.00129 * 0.02562 * 4 3 2 30 30 H 1.08992 * 109.47084 * 300.00337 * 9 7 5 31 31 H 1.08997 * 109.46602 * 59.99895 * 9 7 5 32 32 H 1.09001 * 109.46993 * 179.97438 * 9 7 5 33 33 H 1.08997 * 109.48980 * 292.70682 * 11 10 7 34 34 H 1.09005 * 109.49175 * 52.78241 * 11 10 7 35 35 H 1.08990 * 109.63242 * 294.12083 * 12 11 10 36 36 H 1.08995 * 109.78689 * 173.63023 * 12 11 10 37 37 H 0.97001 * 119.99899 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.62658 * 291.47962 * 22 13 12 39 39 H 1.08997 * 109.62336 * 170.89805 * 22 13 12 40 40 H 1.09002 * 109.49870 * 307.21367 * 23 10 7 41 41 H 1.09003 * 109.49267 * 67.27055 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3328 6 8 3.7151 3.3555 0.5776 7 6 4.7364 2.4360 2.4963 8 1 4.1788 2.3386 3.4279 9 6 5.7255 1.2755 2.3703 10 7 5.4708 3.7082 2.4964 11 6 6.2486 3.8671 1.2603 12 6 6.8513 5.2753 1.2175 13 7 7.6059 5.4985 2.4602 14 6 8.8992 5.9472 2.4262 15 1 9.5738 5.7122 3.2361 16 6 9.3432 6.7042 1.3506 17 7 8.4736 7.2730 0.5427 18 14 11.1746 6.9157 1.0499 19 1 11.7976 5.5851 0.8337 20 1 11.3844 7.7623 -0.1519 21 1 11.7978 7.5681 2.2294 22 6 6.9343 5.2273 3.7403 23 6 6.3282 3.8210 3.6837 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.0451 0.5745 1.7352 30 1 5.1803 0.3317 2.3704 31 1 6.2829 1.3729 1.4387 32 1 6.4182 1.2955 3.2116 33 1 7.0492 3.1279 1.2368 34 1 5.5959 3.7245 0.3990 35 1 6.0531 6.0130 1.1365 36 1 7.5205 5.3644 0.3619 37 1 8.7838 7.8022 -0.2087 38 1 6.1440 5.9604 3.9016 39 1 7.6591 5.2813 4.5526 40 1 5.7335 3.6450 4.5801 41 1 7.1276 3.0821 3.6267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109444269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:57 Heat of formation + Delta-G solvation = 27.409671 kcal Electronic energy + Delta-G solvation = -21049.312980 eV Core-core repulsion = 17966.090624 eV Total energy + Delta-G solvation = -3083.222356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07189 -37.78096 -35.83418 -34.64943 -33.00886 -31.67304 -29.88938 -29.51888 -26.51362 -26.11981 -23.93890 -22.56105 -22.08486 -20.69756 -19.78362 -18.71822 -16.96476 -16.52836 -16.35126 -15.60306 -15.22701 -14.60067 -14.25577 -14.20858 -14.01556 -13.66873 -13.37759 -13.17359 -12.92402 -12.84449 -12.39877 -12.17391 -11.75772 -11.48616 -11.44191 -11.21211 -10.95764 -10.66883 -10.47413 -10.14487 -10.10709 -9.97277 -9.72705 -9.55358 -9.22152 -8.92033 -8.40434 -7.68275 -6.55666 -5.67947 -3.09356 1.75756 2.81877 3.26640 3.43617 3.49168 3.50366 4.44346 4.49203 4.58029 4.74980 4.85218 5.13628 5.19093 5.31440 5.48476 5.49660 5.53201 5.56999 5.63279 5.73525 5.97519 6.05523 6.07836 6.17801 6.21245 6.26587 6.39244 6.48915 6.50173 6.70860 6.93918 7.02468 7.38017 7.42764 7.72263 7.80176 7.85136 7.93250 8.40185 8.53754 9.31167 9.95034 10.54340 11.40461 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.035487 B = 0.004130 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.826626 B = 6777.471828 C = 7113.366259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.173 4.173 3 C 0.146 3.854 4 N -0.735 5.735 5 C 0.517 3.483 6 O -0.508 6.508 7 C 0.063 3.937 8 H 0.100 0.900 9 C -0.181 4.181 10 N -0.510 5.510 11 C 0.025 3.975 12 C 0.182 3.818 13 N -0.596 5.596 14 C -0.252 4.252 15 H 0.064 0.936 16 C 0.001 3.999 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.150 3.850 23 C 0.043 3.957 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.398 0.602 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.020 0.980 34 H 0.086 0.914 35 H 0.026 0.974 36 H 0.086 0.914 37 H 0.254 0.746 38 H 0.025 0.975 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.749 -16.866 2.413 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.192 4.192 3 C 0.023 3.977 4 N -0.390 5.390 5 C 0.303 3.697 6 O -0.382 6.382 7 C -0.049 4.049 8 H 0.118 0.882 9 C -0.241 4.241 10 N -0.234 5.234 11 C -0.103 4.103 12 C 0.056 3.944 13 N -0.320 5.320 14 C -0.382 4.382 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.546 5.546 18 Si 0.732 3.268 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.210 1.210 22 C 0.023 3.977 23 C -0.086 4.086 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.132 0.868 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.232 0.768 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.104 0.896 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -13.073 -15.608 1.714 20.432 hybrid contribution 1.470 -1.018 0.052 1.789 sum -11.603 -16.626 1.766 20.352 Atomic orbital electron populations 1.23969 0.95808 1.02350 0.98609 1.23034 0.96228 0.98205 1.01689 1.20365 0.91905 0.95262 0.90148 1.46019 1.41681 1.20287 1.30985 1.20682 0.80735 0.81826 0.86455 1.90697 1.66428 1.34620 1.46417 1.21661 0.95001 0.91403 0.96876 0.88212 1.22405 1.00385 0.97602 1.03674 1.61971 1.29446 1.28024 1.03944 1.23160 0.94858 1.00853 0.91424 1.20815 0.94029 0.89377 0.90178 1.44169 1.11391 1.76720 0.99689 1.19140 0.86110 1.26399 1.06565 0.91794 1.25030 0.97535 0.97124 1.00101 1.70037 1.32220 1.34167 1.18151 0.86380 0.85558 0.77503 0.77371 1.21192 1.21653 1.20970 1.20950 0.94860 0.91969 0.89945 1.22684 0.94326 1.00207 0.91379 0.88128 0.88012 0.86806 0.91121 0.90742 0.76831 0.92395 0.91592 0.91187 0.96213 0.89617 0.95551 0.89598 0.93613 0.95716 0.92656 0.92152 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 14.32 29.02 0.42 -0.67 16 2 C -0.17 -1.24 9.63 -36.02 -0.35 -1.59 16 3 C 0.15 1.47 6.11 -5.19 -0.03 1.44 16 4 N -0.74 -7.86 5.44 -61.47 -0.33 -8.19 16 5 C 0.52 7.78 6.82 -10.99 -0.07 7.70 16 6 O -0.51 -10.04 13.91 5.56 0.08 -9.96 16 7 C 0.06 0.91 2.77 -68.86 -0.19 0.72 16 8 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 9 C -0.18 -2.21 8.41 37.16 0.31 -1.90 16 10 N -0.51 -9.68 4.41 -227.73 -1.00 -10.69 16 11 C 0.03 0.55 4.58 -3.70 -0.02 0.54 16 12 C 0.18 4.78 5.42 -3.60 -0.02 4.76 16 13 N -0.60 -15.89 3.04 -172.02 -0.52 -16.41 16 14 C -0.25 -7.21 9.63 -15.06 -0.15 -7.35 16 15 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 16 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 17 N -0.90 -27.36 11.15 55.49 0.62 -26.74 16 18 Si 0.90 22.33 29.59 -169.99 -5.03 17.30 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.15 3.32 6.69 -3.60 -0.02 3.30 16 23 C 0.04 0.79 5.14 -3.70 -0.02 0.77 16 24 H 0.10 0.64 7.84 -52.49 -0.41 0.23 16 25 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 26 H 0.11 0.68 8.06 -52.48 -0.42 0.25 16 27 H 0.07 0.78 7.79 -51.93 -0.40 0.37 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.40 3.07 7.88 -40.82 -0.32 2.74 16 30 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 31 H 0.07 0.93 6.56 -51.93 -0.34 0.59 16 32 H 0.07 0.86 6.69 -51.93 -0.35 0.51 16 33 H 0.02 0.43 6.71 -51.93 -0.35 0.08 16 34 H 0.09 1.91 5.30 -51.93 -0.27 1.63 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 2.48 6.11 -51.93 -0.32 2.16 16 37 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 40 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 41 H 0.03 0.57 6.81 -51.93 -0.35 0.22 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -33.71 323.38 -7.97 -41.69 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.43 Total: 0.49 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -0.23 Total: 7.65 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -1.24 Total: -62.04 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.71 -7.97 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.096 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds