Wall clock time and date at job start Mon Mar 30 2020 04:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00101 * 2 1 4 4 N 1.46500 * 109.47269 * 125.00036 * 3 2 1 5 5 C 1.34774 * 119.99865 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99941 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99876 * 180.02562 * 5 4 3 8 8 H 1.09005 * 109.46733 * 300.00330 * 7 5 4 9 9 C 1.53002 * 109.47028 * 60.00037 * 7 5 4 10 10 N 1.46897 * 109.47181 * 180.02562 * 7 5 4 11 11 C 1.46902 * 111.00053 * 299.30309 * 10 7 5 12 12 C 1.53238 * 109.33991 * 172.74462 * 11 10 7 13 13 N 1.47087 * 108.51904 * 53.83075 * 12 11 10 14 14 C 1.36940 * 120.87864 * 128.83606 * 13 12 11 15 15 H 1.07997 * 119.99458 * 206.62368 * 14 13 12 16 16 C 1.38814 * 120.00236 * 26.62229 * 14 13 12 17 17 N 1.31616 * 119.99719 * 17.04268 * 16 14 13 18 18 Si 1.86796 * 120.00210 * 197.03867 * 16 14 13 19 19 H 1.48500 * 109.46914 * 59.99715 * 18 16 14 20 20 H 1.48497 * 109.47336 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47059 * 300.00322 * 18 16 14 22 22 C 1.47079 * 118.23676 * 308.81146 * 13 12 11 23 23 C 1.46895 * 111.00009 * 174.99863 * 10 7 5 24 24 H 1.07998 * 120.00220 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00132 * 180.02562 * 1 2 3 26 26 H 1.08005 * 120.00358 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46825 * 5.00180 * 3 2 1 28 28 H 1.08997 * 109.47209 * 245.00751 * 3 2 1 29 29 H 0.97000 * 120.00129 * 0.02562 * 4 3 2 30 30 H 1.08992 * 109.47084 * 300.00337 * 9 7 5 31 31 H 1.08997 * 109.46602 * 59.99895 * 9 7 5 32 32 H 1.09001 * 109.46993 * 179.97438 * 9 7 5 33 33 H 1.08997 * 109.48980 * 292.70682 * 11 10 7 34 34 H 1.09005 * 109.49175 * 52.78241 * 11 10 7 35 35 H 1.08990 * 109.63242 * 294.12083 * 12 11 10 36 36 H 1.08995 * 109.78689 * 173.63023 * 12 11 10 37 37 H 0.97001 * 119.99899 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.62658 * 291.47962 * 22 13 12 39 39 H 1.08997 * 109.62336 * 170.89805 * 22 13 12 40 40 H 1.09002 * 109.49870 * 307.21367 * 23 10 7 41 41 H 1.09003 * 109.49267 * 67.27055 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3328 6 8 3.7151 3.3555 0.5776 7 6 4.7364 2.4360 2.4963 8 1 4.1788 2.3386 3.4279 9 6 5.7255 1.2755 2.3703 10 7 5.4708 3.7082 2.4964 11 6 6.2486 3.8671 1.2603 12 6 6.8513 5.2753 1.2175 13 7 7.6059 5.4985 2.4602 14 6 8.8992 5.9472 2.4262 15 1 9.5738 5.7122 3.2361 16 6 9.3432 6.7042 1.3506 17 7 8.4736 7.2730 0.5427 18 14 11.1746 6.9157 1.0499 19 1 11.7976 5.5851 0.8337 20 1 11.3844 7.7623 -0.1519 21 1 11.7978 7.5681 2.2294 22 6 6.9343 5.2273 3.7403 23 6 6.3282 3.8210 3.6837 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.0451 0.5745 1.7352 30 1 5.1803 0.3317 2.3704 31 1 6.2829 1.3729 1.4387 32 1 6.4182 1.2955 3.2116 33 1 7.0492 3.1279 1.2368 34 1 5.5959 3.7245 0.3990 35 1 6.0531 6.0130 1.1365 36 1 7.5205 5.3644 0.3619 37 1 8.7838 7.8022 -0.2087 38 1 6.1440 5.9604 3.9016 39 1 7.6591 5.2813 4.5526 40 1 5.7335 3.6450 4.5801 41 1 7.1276 3.0821 3.6267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109444269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:56 Heat of formation + Delta-G solvation = 1.833172 kcal Electronic energy + Delta-G solvation = -21050.422060 eV Core-core repulsion = 17966.090624 eV Total energy + Delta-G solvation = -3084.331436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31824 -39.28559 -36.84059 -36.34172 -34.06192 -33.37844 -31.63373 -31.10643 -27.89052 -27.37940 -25.46754 -24.34095 -23.70334 -21.59113 -20.87489 -20.31895 -18.62257 -17.86566 -17.59286 -16.86425 -16.58877 -16.17104 -15.68056 -15.53099 -15.37885 -15.23376 -14.94176 -14.57191 -14.37411 -14.10294 -13.50966 -13.34090 -13.17410 -13.04013 -12.89049 -12.57585 -12.55147 -12.33709 -12.04436 -12.01184 -11.87020 -11.62163 -11.42393 -10.73832 -10.58543 -10.41774 -9.98505 -9.17806 -8.67754 -7.86259 -5.32376 1.18946 1.45293 1.48824 1.55925 1.66517 2.29385 2.51162 3.05985 3.28537 3.70995 3.80009 3.89925 4.04916 4.13273 4.17796 4.35375 4.40590 4.53624 4.57090 4.62113 4.69661 4.72809 4.78247 4.86139 4.98018 5.01896 5.08643 5.19172 5.22385 5.37403 5.45594 5.60412 5.65372 5.67985 5.80555 6.15406 6.23775 6.37640 6.64041 7.12257 7.33432 7.83952 8.39813 9.20598 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.035487 B = 0.004130 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.826626 B = 6777.471828 C = 7113.366259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.178 4.178 3 C 0.145 3.855 4 N -0.712 5.712 5 C 0.513 3.487 6 O -0.567 6.567 7 C 0.064 3.936 8 H 0.135 0.865 9 C -0.173 4.173 10 N -0.530 5.530 11 C 0.051 3.949 12 C 0.193 3.807 13 N -0.614 5.614 14 C -0.265 4.265 15 H 0.073 0.927 16 C -0.058 4.058 17 N -0.940 5.940 18 Si 0.974 3.026 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.141 3.859 23 C 0.055 3.945 24 H 0.096 0.904 25 H 0.123 0.877 26 H 0.133 0.867 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.417 0.583 30 H 0.098 0.902 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.021 0.979 34 H 0.077 0.923 35 H -0.016 1.016 36 H 0.051 0.949 37 H 0.249 0.751 38 H 0.009 0.991 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 -20.008 4.232 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.196 4.196 3 C 0.021 3.979 4 N -0.366 5.366 5 C 0.300 3.700 6 O -0.445 6.445 7 C -0.048 4.048 8 H 0.153 0.847 9 C -0.232 4.232 10 N -0.255 5.255 11 C -0.078 4.078 12 C 0.067 3.933 13 N -0.338 5.338 14 C -0.395 4.395 15 H 0.091 0.909 16 C -0.253 4.253 17 N -0.586 5.586 18 Si 0.801 3.199 19 H -0.203 1.203 20 H -0.222 1.222 21 H -0.197 1.197 22 C 0.016 3.984 23 C -0.073 4.073 24 H 0.114 0.886 25 H 0.141 0.859 26 H 0.151 0.849 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.254 0.746 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.095 0.905 35 H 0.002 0.998 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.473 -18.833 3.592 23.433 hybrid contribution 1.445 -0.056 -0.467 1.519 sum -12.028 -18.888 3.126 22.610 Atomic orbital electron populations 1.24170 0.95621 1.03216 0.96775 1.22927 0.96338 0.97150 1.03225 1.20388 0.91506 0.96773 0.89191 1.45829 1.40225 1.19550 1.31029 1.20935 0.81010 0.81936 0.86125 1.90686 1.68339 1.37015 1.48437 1.21815 0.95020 0.89842 0.98097 0.84709 1.22344 0.99937 0.98359 1.02566 1.61777 1.29136 1.31859 1.02702 1.22643 0.94707 0.97326 0.93126 1.20478 0.92098 0.91308 0.89450 1.44442 1.11338 1.76874 1.01157 1.19568 0.87287 1.25842 1.06772 0.90914 1.25915 1.02098 0.97191 1.00050 1.70236 1.34360 1.35308 1.18694 0.85249 0.79969 0.77545 0.77128 1.20257 1.22188 1.19726 1.21176 0.94657 0.94319 0.88261 1.22538 0.95001 0.97165 0.92608 0.88568 0.85874 0.84903 0.92510 0.92296 0.74584 0.88332 0.94041 0.90606 0.96140 0.90453 0.99805 0.93066 0.94202 0.97265 0.91460 0.87903 0.94467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 14.32 67.78 0.97 -0.66 16 2 C -0.18 -2.12 9.63 25.65 0.25 -1.87 16 3 C 0.14 2.77 6.11 85.63 0.52 3.29 16 4 N -0.71 -13.69 5.44 -466.78 -2.54 -16.23 16 5 C 0.51 14.85 6.82 87.66 0.60 15.44 16 6 O -0.57 -22.97 13.91 -3.03 -0.04 -23.01 16 7 C 0.06 1.66 2.77 44.17 0.12 1.78 16 8 H 0.14 2.61 8.07 -2.38 -0.02 2.60 16 9 C -0.17 -3.60 8.41 71.98 0.61 -3.00 16 10 N -0.53 -19.61 4.41 -874.40 -3.85 -23.47 16 11 C 0.05 2.28 4.58 86.38 0.40 2.67 16 12 C 0.19 10.71 5.42 86.35 0.47 11.18 16 13 N -0.61 -33.53 3.04 -698.14 -2.12 -35.65 16 14 C -0.26 -15.33 9.63 84.03 0.81 -14.52 16 15 H 0.07 4.00 7.88 -2.91 -0.02 3.98 16 16 C -0.06 -3.40 4.93 84.86 0.42 -2.98 16 17 N -0.94 -59.65 11.15 21.65 0.24 -59.41 16 18 Si 0.97 46.73 29.59 68.60 2.03 48.75 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.14 6.23 6.69 86.35 0.58 6.80 16 23 C 0.06 1.89 5.14 86.38 0.44 2.34 16 24 H 0.10 1.06 7.84 -2.91 -0.02 1.04 16 25 H 0.12 0.77 8.06 -2.91 -0.02 0.75 16 26 H 0.13 1.11 8.06 -2.91 -0.02 1.08 16 27 H 0.06 1.25 7.79 -2.38 -0.02 1.23 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.42 4.81 7.88 -92.71 -0.73 4.08 16 30 H 0.10 1.24 7.56 -2.39 -0.02 1.23 16 31 H 0.04 1.08 6.56 -2.39 -0.02 1.07 16 32 H 0.08 1.54 6.69 -2.39 -0.02 1.52 16 33 H 0.02 0.90 6.71 -2.39 -0.02 0.89 16 34 H 0.08 3.61 5.30 -2.38 -0.01 3.59 16 35 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.05 3.15 6.11 -2.39 -0.01 3.14 16 37 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.07 2.75 7.95 -2.39 -0.02 2.73 16 40 H 0.10 2.68 8.05 -2.39 -0.02 2.66 16 41 H 0.04 1.25 6.81 -2.39 -0.02 1.23 16 Total: -1.00 -78.10 323.38 0.18 -77.92 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.28 Total: 10.62 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 6.18 Total: 20.48 kcal Atomic # 7 Polarization: -126.48 SS G_CDS: -8.27 Total: -134.75 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -78.10 0.18 -77.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.751 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds