Wall clock time and date at job start Mon Mar 30 2020 04:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00077 * 2 1 4 4 C 1.52998 * 109.47145 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47248 * 67.93759 * 4 3 2 6 6 C 1.46901 * 111.00149 * 158.06124 * 5 4 3 7 7 C 1.50698 * 109.47157 * 287.84031 * 6 5 4 8 8 H 1.08002 * 119.99770 * 3.04083 * 7 6 5 9 9 C 1.37878 * 120.00091 * 183.04390 * 7 6 5 10 10 N 1.31509 * 119.99789 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99956 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46964 * 89.99919 * 11 9 7 13 13 H 1.48495 * 109.46750 * 209.99762 * 11 9 7 14 14 H 1.48500 * 109.47127 * 329.99843 * 11 9 7 15 15 C 1.46902 * 111.00042 * 282.01518 * 5 4 3 16 16 C 1.52992 * 109.47286 * 165.72830 * 15 5 4 17 17 C 1.50697 * 109.47064 * 180.02562 * 16 15 5 18 18 N 1.30500 * 125.65018 * 90.02925 * 17 16 15 19 19 C 1.34132 * 109.25781 * 180.02562 * 18 17 16 20 20 C 1.34677 * 108.01672 * 359.97438 * 19 18 17 21 21 N 1.35043 * 125.65315 * 269.71570 * 17 16 15 22 22 C 1.46504 * 126.39187 * 0.02562 * 21 17 16 23 23 H 1.09006 * 109.47151 * 300.00002 * 1 2 3 24 24 H 1.08996 * 109.47371 * 59.99988 * 1 2 3 25 25 H 1.08999 * 109.47293 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47181 * 59.99658 * 3 2 1 27 27 H 1.09004 * 109.46812 * 300.00024 * 3 2 1 28 28 H 1.08996 * 109.46926 * 307.93270 * 4 3 2 29 29 H 1.09001 * 109.47025 * 187.93452 * 4 3 2 30 30 H 1.09003 * 109.46967 * 47.83544 * 6 5 4 31 31 H 1.08998 * 109.47451 * 167.83807 * 6 5 4 32 32 H 0.97001 * 119.99860 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.46946 * 285.72808 * 15 5 4 34 34 H 1.09002 * 109.47077 * 45.72513 * 15 5 4 35 35 H 1.08997 * 109.47110 * 299.99877 * 16 15 5 36 36 H 1.09002 * 109.47322 * 59.99833 * 16 15 5 37 37 H 1.07997 * 125.99223 * 180.02562 * 19 18 17 38 38 H 1.07998 * 126.58347 * 180.02562 * 20 19 18 39 39 H 1.09006 * 109.46771 * 90.00106 * 22 21 17 40 40 H 1.09002 * 109.47447 * 209.99654 * 22 21 17 41 41 H 1.08996 * 109.47310 * 330.00229 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9819 0.6276 -1.2845 6 6 5.3878 0.9654 -1.5445 7 6 5.4983 2.4298 -1.8824 8 1 4.6204 3.0583 -1.8542 9 6 6.7201 2.9673 -2.2277 10 7 7.7891 2.2021 -2.2616 11 14 6.8570 4.7825 -2.6473 12 1 7.1451 5.5556 -1.4126 13 1 7.9568 4.9829 -3.6248 14 1 5.5780 5.2518 -3.2381 15 6 3.7728 -0.8258 -1.3290 16 6 3.9068 -1.3163 -2.7719 17 6 3.6917 -2.8072 -2.8176 18 7 2.5447 -3.4052 -2.9902 19 6 2.7316 -4.7333 -2.9753 20 6 4.0444 -4.9672 -2.7869 21 7 4.6547 -3.7456 -2.6928 22 6 6.0849 -3.5017 -2.4896 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6885 1.8464 0.8899 27 1 1.6885 1.8463 -0.8900 28 1 3.8480 0.5260 0.8096 29 1 3.9780 2.1706 0.1412 30 1 5.9830 0.7515 -0.6567 31 1 5.7557 0.3708 -2.3806 32 1 8.6488 2.5804 -2.5042 33 1 4.5192 -1.3194 -0.7066 34 1 2.7759 -1.0610 -0.9563 35 1 3.1605 -0.8227 -3.3943 36 1 4.9038 -1.0811 -3.1446 37 1 1.9640 -5.4837 -3.0944 38 1 4.5241 -5.9329 -2.7266 39 1 6.2969 -3.4523 -1.4215 40 1 6.6591 -4.3133 -2.9367 41 1 6.3630 -2.5583 -2.9593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122707505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:24 Heat of formation + Delta-G solvation = -0.715469 kcal Electronic energy + Delta-G solvation = -20910.146527 eV Core-core repulsion = 17825.704573 eV Total energy + Delta-G solvation = -3084.441954 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.98589 -39.44154 -37.78606 -34.91917 -34.75635 -33.49936 -30.84605 -29.53357 -28.07056 -27.59431 -26.80750 -24.69749 -23.61794 -22.23925 -21.54907 -20.56544 -18.59100 -17.92501 -17.43792 -17.02527 -16.72509 -16.46757 -16.21884 -15.76163 -15.41662 -15.12111 -14.84006 -14.39112 -14.14219 -13.96510 -13.83221 -13.67300 -13.44828 -13.09263 -12.80213 -12.73272 -12.71329 -12.50059 -12.27713 -12.11254 -11.97536 -11.40694 -11.21095 -10.90822 -10.56732 -10.54702 -10.39832 -9.26536 -8.99468 -8.16227 -6.24566 1.12445 1.43986 1.45182 1.56427 1.93840 2.20450 2.43650 2.97295 3.14783 3.20343 3.71161 3.91819 3.97462 4.19725 4.23471 4.29245 4.36028 4.42539 4.49368 4.54548 4.61232 4.63556 4.67361 4.67783 4.79405 4.86905 4.92080 4.98131 5.09098 5.20741 5.27131 5.38041 5.43384 5.71120 5.91091 6.11217 6.24157 6.32357 6.45493 6.65356 6.90771 7.21068 7.44576 8.94371 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.006064 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.983575 B = 4616.269359 C = 6201.543603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.409 6.409 3 C 0.076 3.924 4 C 0.063 3.937 5 N -0.537 5.537 6 C 0.206 3.794 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.005 3.995 10 N -0.933 5.933 11 Si 0.964 3.036 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.073 3.927 16 C -0.018 4.018 17 C 0.196 3.804 18 N -0.522 5.522 19 C -0.056 4.056 20 C -0.053 4.053 21 N -0.459 5.459 22 C 0.066 3.934 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.026 0.974 29 H 0.085 0.915 30 H -0.040 1.040 31 H 0.016 0.984 32 H 0.263 0.737 33 H 0.004 0.996 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.191 0.809 38 H 0.213 0.787 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 -10.722 2.439 13.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.329 6.329 3 C 0.000 4.000 4 C -0.065 4.065 5 N -0.261 5.261 6 C 0.080 3.920 7 C -0.557 4.557 8 H 0.081 0.919 9 C -0.193 4.193 10 N -0.573 5.573 11 Si 0.789 3.211 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.191 1.191 15 C -0.055 4.055 16 C -0.058 4.058 17 C -0.066 4.066 18 N -0.242 5.242 19 C -0.204 4.204 20 C -0.186 4.186 21 N -0.142 5.142 22 C -0.076 4.076 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.103 0.897 30 H -0.023 1.023 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.022 0.978 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.208 0.792 38 H 0.230 0.770 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.351 -10.252 1.945 13.365 hybrid contribution 1.584 0.292 0.471 1.678 sum -6.767 -9.960 2.416 12.282 Atomic orbital electron populations 1.22829 0.80178 1.03142 1.00544 1.87841 1.21007 1.28637 1.95379 1.22566 0.92350 0.84474 1.00658 1.22061 0.94319 1.00289 0.89830 1.62010 1.22049 1.10354 1.31673 1.19470 0.83077 0.95982 0.93484 1.21461 0.94071 0.94799 1.45343 0.91941 1.25809 0.95376 1.02574 0.95499 1.70060 0.99870 1.37445 1.49954 0.85466 0.77853 0.79729 0.78072 1.19922 1.21022 1.19081 1.22067 1.01404 0.87861 0.94216 1.19787 1.02512 0.84947 0.98521 1.23147 0.84178 0.93587 1.05732 1.70197 1.24968 1.07896 1.21152 1.22807 0.96314 0.92603 1.08663 1.23306 0.94540 0.90182 1.10549 1.45561 1.09362 1.06703 1.52531 1.22257 0.76662 1.04852 1.03798 0.92760 0.93931 0.89372 0.91162 0.92972 0.95559 0.89706 1.02250 0.96625 0.92809 0.97779 0.88483 0.89733 0.91337 0.79211 0.77023 0.90123 0.86267 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -13.36 7.92 -148.98 -1.18 -14.54 16 3 C 0.08 2.45 6.25 71.98 0.45 2.90 16 4 C 0.06 2.47 5.36 86.30 0.46 2.93 16 5 N -0.54 -23.63 4.33 -900.82 -3.90 -27.53 16 6 C 0.21 10.68 4.57 85.56 0.39 11.07 16 7 C -0.52 -28.59 8.38 25.60 0.21 -28.37 16 8 H 0.06 3.39 7.65 -2.91 -0.02 3.36 16 9 C 0.01 0.30 5.46 84.66 0.46 0.76 16 10 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 11 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 C 0.07 2.95 4.74 86.30 0.41 3.35 16 16 C -0.02 -0.70 5.56 29.84 0.17 -0.53 16 17 C 0.20 6.93 7.16 138.13 0.99 7.92 16 18 N -0.52 -18.83 11.25 -188.13 -2.12 -20.95 16 19 C -0.06 -1.57 11.87 83.52 0.99 -0.58 16 20 C -0.05 -1.26 11.58 83.09 0.96 -0.29 16 21 N -0.46 -13.16 3.15 -537.60 -1.69 -14.85 16 22 C 0.07 1.51 10.97 127.77 1.40 2.92 16 23 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.03 1.02 7.97 -2.39 -0.02 1.00 16 29 H 0.08 3.48 7.01 -2.39 -0.02 3.47 16 30 H -0.04 -2.27 8.05 -2.39 -0.02 -2.29 16 31 H 0.02 0.86 6.19 -2.39 -0.01 0.85 16 32 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.00 0.17 8.07 -2.39 -0.02 0.15 16 34 H 0.10 3.93 5.15 -2.39 -0.01 3.92 16 35 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.07 2.74 5.38 -2.39 -0.01 2.73 16 37 H 0.19 4.01 8.06 -2.91 -0.02 3.98 16 38 H 0.21 3.00 8.06 -2.91 -0.02 2.97 16 39 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 2.04 7.04 -2.39 -0.02 2.03 16 Total: -1.00 -68.79 335.76 2.56 -66.23 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.99 Total: 16.30 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 8.15 Total: 4.03 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -7.43 Total: -117.43 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.18 Total: -14.54 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.79 2.56 -66.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122707505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.515 kcal (2) G-P(sol) polarization free energy of solvation -68.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds