Wall clock time and date at job start Mon Mar 30 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47416 * 2 1 4 4 C 1.50701 * 109.47021 * 119.99402 * 2 1 3 5 5 H 1.08001 * 119.99760 * 119.99949 * 4 2 1 6 6 C 1.37878 * 120.00100 * 300.00205 * 4 2 1 7 7 N 1.31518 * 119.99730 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00074 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46772 * 90.00113 * 8 6 4 10 10 H 1.48500 * 109.47171 * 210.00056 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00529 * 8 6 4 12 12 N 1.46893 * 109.47539 * 239.99822 * 2 1 3 13 13 C 1.48560 * 111.00455 * 180.12726 * 12 2 1 14 14 C 1.54383 * 104.59355 * 200.95665 * 13 12 2 15 15 C 1.54265 * 105.06048 * 23.85501 * 14 13 12 16 16 H 1.09003 * 110.31553 * 240.99865 * 15 14 13 17 17 N 1.46900 * 110.32441 * 118.89420 * 15 14 13 18 18 C 1.46848 * 110.99829 * 181.17505 * 17 15 14 19 19 C 1.53038 * 109.51907 * 174.16169 * 18 17 15 20 20 C 1.53115 * 109.28160 * 59.18489 * 19 18 17 21 21 N 1.46900 * 109.52362 * 182.37440 * 20 19 18 22 22 C 1.53127 * 109.20701 * 302.31078 * 20 19 18 23 23 C 1.46853 * 110.99887 * 56.96660 * 17 15 14 24 24 C 1.48563 * 111.00253 * 64.70346 * 12 2 1 25 25 H 1.09004 * 109.47222 * 59.99896 * 1 2 3 26 26 H 1.08996 * 109.47235 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47405 * 300.00731 * 1 2 3 28 28 H 0.96995 * 120.00037 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.41246 * 82.17857 * 13 12 2 30 30 H 1.08998 * 110.41194 * 319.73461 * 13 12 2 31 31 H 1.08993 * 110.32526 * 264.95493 * 14 13 12 32 32 H 1.08997 * 110.40809 * 142.79202 * 14 13 12 33 33 H 1.08999 * 109.45820 * 54.14289 * 18 17 15 34 34 H 1.08998 * 109.45409 * 294.17027 * 18 17 15 35 35 H 1.08999 * 109.50200 * 299.23749 * 19 18 17 36 36 H 1.09008 * 109.49697 * 179.12631 * 19 18 17 37 37 H 1.08995 * 109.52175 * 62.24478 * 20 19 18 38 38 H 1.00892 * 110.99779 * 179.86837 * 21 20 19 39 39 H 1.00898 * 110.99850 * 303.82745 * 21 20 19 40 40 H 1.08999 * 109.50018 * 177.62918 * 22 20 19 41 41 H 1.09000 * 109.50389 * 297.74474 * 22 20 19 42 42 H 1.08999 * 109.46118 * 305.85682 * 23 17 15 43 43 H 1.08999 * 109.45970 * 65.82564 * 23 17 15 44 44 H 1.09006 * 110.40681 * 40.26704 * 24 12 2 45 45 H 1.09003 * 110.41230 * 277.82748 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6258 1.2800 2.6540 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9956 3.9069 11 1 0.8489 2.1774 1.4922 12 7 2.0197 -0.6925 -1.1993 13 6 3.5048 -0.7150 -1.2321 14 6 3.8575 -0.9543 -2.7159 15 6 2.6297 -0.4552 -3.5054 16 1 2.1905 -1.2719 -4.0783 17 7 3.0112 0.6465 -4.3991 18 6 1.8471 1.1518 -5.1380 19 6 2.2511 2.3873 -5.9457 20 6 3.3722 2.0111 -6.9183 21 7 3.8032 3.2058 -7.6565 22 6 4.5547 1.4431 -6.1285 23 6 4.0831 0.2345 -5.3144 24 6 1.6385 0.0436 -2.4322 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.9033 -0.5276 4.4376 29 1 3.8864 -1.5282 -0.6147 30 1 3.9070 0.2404 -0.8951 31 1 4.0198 -2.0163 -2.8999 32 1 4.7435 -0.3831 -2.9929 33 1 1.0587 1.4196 -4.4344 34 1 1.4829 0.3787 -5.8145 35 1 2.6026 3.1658 -5.2687 36 1 1.3905 2.7529 -6.5062 37 1 3.0089 1.2605 -7.6202 38 1 4.5446 2.9830 -8.3036 39 1 3.0251 3.6370 -8.1325 40 1 5.3392 1.1346 -6.8195 41 1 4.9425 2.2068 -5.4544 42 1 4.9188 -0.1640 -4.7390 43 1 3.7082 -0.5342 -5.9901 44 1 1.7486 1.1178 -2.2829 45 1 0.6149 -0.1983 -2.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131924047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:35 Heat of formation + Delta-G solvation = 16.914849 kcal Electronic energy + Delta-G solvation = -21571.800536 eV Core-core repulsion = 18623.956185 eV Total energy + Delta-G solvation = -2947.844351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.73048 -37.85806 -35.18841 -33.25029 -31.53030 -31.08259 -29.90006 -28.15416 -27.07329 -24.83940 -23.41847 -22.92239 -21.33117 -19.92874 -19.53052 -19.40828 -16.77145 -16.42881 -15.79897 -15.60725 -15.33925 -14.89734 -14.57839 -14.08220 -13.92477 -13.41502 -13.12770 -13.05317 -12.81696 -12.45489 -12.24571 -12.17178 -11.84822 -11.61895 -11.28848 -11.14330 -10.99467 -10.75181 -10.67901 -10.51623 -10.38173 -10.30409 -10.19330 -10.04092 -9.43879 -9.00934 -8.98506 -8.53613 -8.25562 -7.47245 -6.04215 -4.02540 3.28914 3.39245 3.41205 3.81315 4.17979 4.42570 4.57677 4.67161 4.91132 5.00773 5.02349 5.16564 5.18262 5.28746 5.31118 5.40450 5.43876 5.48727 5.63014 5.66862 5.75485 5.82824 5.89660 6.05291 6.10101 6.16461 6.19769 6.25215 6.31033 6.39669 6.50409 6.52320 6.64751 6.79586 6.84999 6.87032 7.11138 7.14530 7.16859 7.31627 7.57343 7.92823 8.01904 8.66802 9.02579 9.58141 11.08808 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.004374 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.163121 B = 6400.546585 C = 6780.686452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.173 3.827 3 H 0.001 0.999 4 C -0.504 4.504 5 H 0.081 0.919 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.495 5.495 13 C 0.055 3.945 14 C -0.122 4.122 15 C 0.081 3.919 16 H 0.045 0.955 17 N -0.530 5.530 18 C 0.057 3.943 19 C -0.109 4.109 20 C 0.090 3.910 21 N -0.847 5.847 22 C -0.108 4.108 23 C 0.054 3.946 24 C 0.039 3.961 25 H 0.026 0.974 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.263 0.737 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.339 0.661 39 H 0.339 0.661 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.047 0.953 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.952 4.643 -21.834 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.065 3.935 3 H 0.018 0.982 4 C -0.542 4.542 5 H 0.099 0.901 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.219 5.219 13 C -0.074 4.074 14 C -0.160 4.160 15 C -0.027 4.027 16 H 0.063 0.937 17 N -0.255 5.255 18 C -0.072 4.072 19 C -0.148 4.148 20 C -0.021 4.021 21 N -0.376 5.376 22 C -0.146 4.146 23 C -0.074 4.074 24 C -0.090 4.090 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.099 4.767 -20.593 21.241 hybrid contribution -1.036 0.455 -1.119 1.592 sum 1.062 5.222 -21.712 22.356 Atomic orbital electron populations 1.22126 0.98522 1.01206 0.98142 1.19864 0.91610 0.92765 0.89298 0.98197 1.20954 1.31818 1.13532 0.87910 0.90097 1.24921 0.95837 0.96601 0.95816 1.69882 1.45791 1.40339 0.97849 0.86877 0.80734 0.83877 0.76827 1.20575 1.22497 1.19425 1.65361 1.08131 1.47201 1.01233 1.22798 0.89520 1.01117 0.93928 1.22513 0.96979 1.00368 0.96124 1.22388 0.96283 0.90835 0.93190 0.93673 1.62039 1.08905 1.34673 1.19894 1.22049 0.93154 0.95877 0.96114 1.21607 0.97065 0.98402 0.97690 1.21398 0.95678 0.90458 0.94589 1.58707 1.14661 1.29568 1.34697 1.21618 0.96650 0.97962 0.98417 1.22125 0.95450 0.95782 0.94086 1.23093 0.97496 0.97142 0.91305 0.95474 0.92143 0.94119 0.92664 0.90089 0.94084 0.91640 0.90927 0.90154 0.95298 0.90095 0.92035 0.95369 0.84878 0.84832 0.92041 0.90115 0.89888 0.95396 0.93480 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.63 37.15 0.32 -2.89 16 2 C 0.17 4.19 1.42 -68.87 -0.10 4.09 16 3 H 0.00 0.01 7.03 -51.93 -0.37 -0.35 16 4 C -0.50 -14.28 8.67 -34.44 -0.30 -14.58 16 5 H 0.08 2.49 7.20 -52.49 -0.38 2.11 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 8 Si 0.89 22.31 24.37 -169.99 -4.14 18.17 16 9 H -0.28 -6.83 6.87 56.52 0.39 -6.44 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 12 N -0.49 -10.45 5.19 -223.41 -1.16 -11.61 16 13 C 0.05 1.07 5.69 -2.18 -0.01 1.05 16 14 C -0.12 -1.85 6.07 -25.34 -0.15 -2.00 16 15 C 0.08 1.20 2.79 -66.33 -0.19 1.02 16 16 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 17 N -0.53 -6.89 4.45 -224.95 -1.00 -7.89 16 18 C 0.06 0.66 5.32 -3.83 -0.02 0.64 16 19 C -0.11 -1.12 5.64 -26.65 -0.15 -1.27 16 20 C 0.09 0.83 3.31 -67.59 -0.22 0.61 16 21 N -0.85 -6.82 9.25 -4.56 -0.04 -6.86 16 22 C -0.11 -1.07 5.69 -26.58 -0.15 -1.22 16 23 C 0.05 0.60 5.19 -3.76 -0.02 0.58 16 24 C 0.04 0.67 3.92 -2.18 -0.01 0.67 16 25 H 0.03 0.52 7.07 -51.93 -0.37 0.16 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.08 1.68 7.42 -51.93 -0.39 1.30 16 30 H 0.04 0.85 7.97 -51.93 -0.41 0.43 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.02 6.24 -51.93 -0.32 0.69 16 33 H 0.08 0.98 6.97 -51.93 -0.36 0.62 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.34 2.22 9.04 -39.30 -0.36 1.86 16 39 H 0.34 2.27 9.00 -39.29 -0.35 1.91 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.91 5.99 -51.93 -0.31 0.60 16 43 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 0.87 7.70 -51.93 -0.40 0.47 16 45 H 0.07 1.13 7.70 -51.93 -0.40 0.73 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -30.39 327.84 -9.72 -40.11 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.99 Total: 1.43 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.10 Total: -11.38 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -1.43 Total: -53.28 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.39 -9.72 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131924047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.029 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds