Wall clock time and date at job start Mon Mar 30 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47416 * 2 1 4 4 C 1.50701 * 109.47021 * 119.99402 * 2 1 3 5 5 H 1.08001 * 119.99760 * 119.99949 * 4 2 1 6 6 C 1.37878 * 120.00100 * 300.00205 * 4 2 1 7 7 N 1.31518 * 119.99730 * 180.02562 * 6 4 2 8 8 Si 1.86793 * 120.00074 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46772 * 90.00113 * 8 6 4 10 10 H 1.48500 * 109.47171 * 210.00056 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00529 * 8 6 4 12 12 N 1.46893 * 109.47539 * 239.99822 * 2 1 3 13 13 C 1.48560 * 111.00455 * 180.12726 * 12 2 1 14 14 C 1.54383 * 104.59355 * 200.95665 * 13 12 2 15 15 C 1.54265 * 105.06048 * 23.85501 * 14 13 12 16 16 H 1.09003 * 110.31553 * 240.99865 * 15 14 13 17 17 N 1.46900 * 110.32441 * 118.89420 * 15 14 13 18 18 C 1.46848 * 110.99829 * 181.17505 * 17 15 14 19 19 C 1.53038 * 109.51907 * 174.16169 * 18 17 15 20 20 C 1.53115 * 109.28160 * 59.18489 * 19 18 17 21 21 N 1.46900 * 109.52362 * 182.37440 * 20 19 18 22 22 C 1.53127 * 109.20701 * 302.31078 * 20 19 18 23 23 C 1.46853 * 110.99887 * 56.96660 * 17 15 14 24 24 C 1.48563 * 111.00253 * 64.70346 * 12 2 1 25 25 H 1.09004 * 109.47222 * 59.99896 * 1 2 3 26 26 H 1.08996 * 109.47235 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47405 * 300.00731 * 1 2 3 28 28 H 0.96995 * 120.00037 * 180.02562 * 7 6 4 29 29 H 1.09000 * 110.41246 * 82.17857 * 13 12 2 30 30 H 1.08998 * 110.41194 * 319.73461 * 13 12 2 31 31 H 1.08993 * 110.32526 * 264.95493 * 14 13 12 32 32 H 1.08997 * 110.40809 * 142.79202 * 14 13 12 33 33 H 1.08999 * 109.45820 * 54.14289 * 18 17 15 34 34 H 1.08998 * 109.45409 * 294.17027 * 18 17 15 35 35 H 1.08999 * 109.50200 * 299.23749 * 19 18 17 36 36 H 1.09008 * 109.49697 * 179.12631 * 19 18 17 37 37 H 1.08995 * 109.52175 * 62.24478 * 20 19 18 38 38 H 1.00892 * 110.99779 * 179.86837 * 21 20 19 39 39 H 1.00898 * 110.99850 * 303.82745 * 21 20 19 40 40 H 1.08999 * 109.50018 * 177.62918 * 22 20 19 41 41 H 1.09000 * 109.50389 * 297.74474 * 22 20 19 42 42 H 1.08999 * 109.46118 * 305.85682 * 23 17 15 43 43 H 1.08999 * 109.45970 * 65.82564 * 23 17 15 44 44 H 1.09006 * 110.40681 * 40.26704 * 24 12 2 45 45 H 1.09003 * 110.41230 * 277.82748 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6258 1.2800 2.6540 9 1 -0.8021 0.8746 2.6992 10 1 0.9771 1.9956 3.9069 11 1 0.8489 2.1774 1.4922 12 7 2.0197 -0.6925 -1.1993 13 6 3.5048 -0.7150 -1.2321 14 6 3.8575 -0.9543 -2.7159 15 6 2.6297 -0.4552 -3.5054 16 1 2.1905 -1.2719 -4.0783 17 7 3.0112 0.6465 -4.3991 18 6 1.8471 1.1518 -5.1380 19 6 2.2511 2.3873 -5.9457 20 6 3.3722 2.0111 -6.9183 21 7 3.8032 3.2058 -7.6565 22 6 4.5547 1.4431 -6.1285 23 6 4.0831 0.2345 -5.3144 24 6 1.6385 0.0436 -2.4322 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 1.9033 -0.5276 4.4376 29 1 3.8864 -1.5282 -0.6147 30 1 3.9070 0.2404 -0.8951 31 1 4.0198 -2.0163 -2.8999 32 1 4.7435 -0.3831 -2.9929 33 1 1.0587 1.4196 -4.4344 34 1 1.4829 0.3787 -5.8145 35 1 2.6026 3.1658 -5.2687 36 1 1.3905 2.7529 -6.5062 37 1 3.0089 1.2605 -7.6202 38 1 4.5446 2.9830 -8.3036 39 1 3.0251 3.6370 -8.1325 40 1 5.3392 1.1346 -6.8195 41 1 4.9425 2.2068 -5.4544 42 1 4.9188 -0.1640 -4.7390 43 1 3.7082 -0.5342 -5.9901 44 1 1.7486 1.1178 -2.2829 45 1 0.6149 -0.1983 -2.7183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131924047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:34 Heat of formation + Delta-G solvation = -7.797134 kcal Electronic energy + Delta-G solvation = -21572.872128 eV Core-core repulsion = 18623.956185 eV Total energy + Delta-G solvation = -2948.915943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.84691 -39.13200 -36.41216 -34.89574 -33.30723 -31.98895 -30.99414 -29.68182 -28.37939 -26.82218 -24.42273 -23.87689 -22.83520 -21.22166 -20.92740 -20.53997 -18.81150 -17.65674 -17.13441 -16.54182 -16.41136 -16.05103 -15.79174 -15.35984 -15.21454 -15.05251 -14.54601 -14.33277 -14.15701 -13.94255 -13.86953 -13.33523 -13.10897 -12.95468 -12.62780 -12.49157 -12.22861 -12.16031 -12.09664 -12.04638 -11.79943 -11.69368 -11.52030 -11.38350 -11.13958 -11.06189 -10.73866 -9.59358 -9.23772 -9.18539 -8.29686 -6.32830 1.28326 1.33947 1.43808 2.30520 2.78587 3.04151 3.44176 3.53320 3.63460 3.81721 3.88988 3.91023 4.18779 4.28755 4.32414 4.42089 4.46516 4.50595 4.56762 4.63049 4.63812 4.68140 4.74208 4.79004 4.82509 4.89390 4.91862 4.98109 5.00681 5.08806 5.10310 5.18965 5.20175 5.24474 5.39868 5.43508 5.62918 5.96437 6.09202 6.20969 6.27751 6.29987 6.62431 6.63283 6.72930 7.32111 8.86967 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.004374 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.163121 B = 6400.546585 C = 6780.686452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.177 3.823 3 H -0.013 1.013 4 C -0.507 4.507 5 H 0.040 0.960 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.262 1.262 10 H -0.297 1.297 11 H -0.256 1.256 12 N -0.508 5.508 13 C 0.053 3.947 14 C -0.108 4.108 15 C 0.093 3.907 16 H 0.056 0.944 17 N -0.542 5.542 18 C 0.056 3.944 19 C -0.105 4.105 20 C 0.094 3.906 21 N -0.854 5.854 22 C -0.104 4.104 23 C 0.054 3.946 24 C 0.042 3.958 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.266 0.734 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.037 0.963 38 H 0.349 0.651 39 H 0.348 0.652 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 5.708 -24.673 25.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.068 3.932 3 H 0.005 0.995 4 C -0.546 4.546 5 H 0.058 0.942 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.776 3.224 9 H -0.188 1.188 10 H -0.224 1.224 11 H -0.180 1.180 12 N -0.233 5.233 13 C -0.076 4.076 14 C -0.146 4.146 15 C -0.016 4.016 16 H 0.074 0.926 17 N -0.268 5.268 18 C -0.072 4.072 19 C -0.143 4.143 20 C -0.018 4.018 21 N -0.385 5.385 22 C -0.142 4.142 23 C -0.074 4.074 24 C -0.087 4.087 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.122 5.834 -23.474 24.214 hybrid contribution -0.645 0.069 -0.274 0.704 sum 0.477 5.903 -23.748 24.475 Atomic orbital electron populations 1.22019 0.96654 1.01401 0.99428 1.19681 0.92996 0.91484 0.89038 0.99518 1.21183 1.30957 1.12366 0.90067 0.94214 1.25758 0.97381 0.99888 0.95354 1.70028 1.47714 1.42483 0.98528 0.85854 0.79474 0.80011 0.77074 1.18819 1.22431 1.18027 1.65273 1.08887 1.47561 1.01552 1.22756 0.88878 0.99131 0.96809 1.22426 0.97916 1.01611 0.92695 1.22196 0.94977 0.91572 0.92863 0.92595 1.62004 1.09968 1.33985 1.20837 1.22079 0.92434 0.96606 0.96089 1.21553 0.98078 0.97149 0.97509 1.21311 0.94938 0.91026 0.94484 1.58657 1.15428 1.29152 1.35299 1.21573 0.97399 0.96950 0.98284 1.22171 0.94713 0.96537 0.93969 1.23125 0.99015 0.96203 0.90321 0.92129 0.92538 0.94747 0.92486 0.92577 0.96022 0.90256 0.89525 0.90988 0.94258 0.92155 0.90467 0.94520 0.83805 0.83866 0.90297 0.92079 0.89980 0.94386 0.94415 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 8.63 71.98 0.62 -5.34 16 2 C 0.18 8.59 1.42 44.17 0.06 8.65 16 3 H -0.01 -0.64 7.03 -2.39 -0.02 -0.66 16 4 C -0.51 -29.72 8.67 25.60 0.22 -29.49 16 5 H 0.04 2.59 7.20 -2.91 -0.02 2.57 16 6 C 0.01 0.80 5.45 84.65 0.46 1.26 16 7 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 8 Si 0.95 46.02 24.37 68.60 1.67 47.69 16 9 H -0.26 -11.99 6.87 99.48 0.68 -11.30 16 10 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 11 H -0.26 -11.77 6.53 99.48 0.65 -11.12 16 12 N -0.51 -21.44 5.19 -860.73 -4.47 -25.90 16 13 C 0.05 2.11 5.69 86.45 0.49 2.60 16 14 C -0.11 -3.16 6.07 31.49 0.19 -2.97 16 15 C 0.09 2.54 2.79 45.81 0.13 2.67 16 16 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 17 N -0.54 -12.90 4.45 -865.61 -3.86 -16.76 16 18 C 0.06 1.16 5.32 86.33 0.46 1.62 16 19 C -0.10 -1.89 5.64 30.65 0.17 -1.72 16 20 C 0.09 1.47 3.31 45.00 0.15 1.62 16 21 N -0.85 -11.58 9.25 -168.35 -1.56 -13.13 16 22 C -0.10 -1.80 5.69 30.69 0.17 -1.62 16 23 C 0.05 1.05 5.19 86.37 0.45 1.50 16 24 C 0.04 1.39 3.92 86.45 0.34 1.73 16 25 H 0.06 2.19 7.07 -2.39 -0.02 2.18 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.03 1.52 3.27 -2.38 -0.01 1.51 16 28 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 29 H 0.06 2.47 7.42 -2.39 -0.02 2.45 16 30 H 0.02 0.93 7.97 -2.39 -0.02 0.91 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.09 2.30 6.24 -2.39 -0.01 2.28 16 33 H 0.07 1.59 6.97 -2.39 -0.02 1.58 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.35 3.62 9.04 -89.70 -0.81 2.81 16 39 H 0.35 3.73 9.00 -89.70 -0.81 2.92 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 1.60 5.99 -2.39 -0.01 1.58 16 43 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.04 1.34 7.70 -2.38 -0.02 1.32 16 45 H 0.08 2.48 7.70 -2.39 -0.02 2.46 16 Total: -1.00 -67.04 327.84 -4.71 -71.75 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -0.72 Total: 15.65 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 3.92 Total: -19.51 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -9.58 Total: -115.59 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.69 kcal Total: -67.04 -4.71 -71.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131924047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.954 kcal (2) G-P(sol) polarization free energy of solvation -67.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds