Wall clock time and date at job start Mon Mar 30 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47091 * 2 1 4 4 C 1.50693 * 109.47020 * 239.99440 * 2 1 3 5 5 H 1.08001 * 120.00522 * 245.21946 * 4 2 1 6 6 C 1.37883 * 119.99907 * 65.22035 * 4 2 1 7 7 N 1.31511 * 119.99854 * 6.74521 * 6 4 2 8 8 Si 1.86803 * 119.99997 * 186.75158 * 6 4 2 9 9 H 1.48502 * 109.47457 * 94.91958 * 8 6 4 10 10 H 1.48496 * 109.47054 * 214.92224 * 8 6 4 11 11 H 1.48500 * 109.46931 * 334.91700 * 8 6 4 12 12 N 1.46900 * 109.46754 * 119.99786 * 2 1 3 13 13 C 1.48559 * 110.99945 * 179.87290 * 12 2 1 14 14 C 1.54383 * 104.59769 * 200.96013 * 13 12 2 15 15 C 1.54269 * 105.05610 * 23.85166 * 14 13 12 16 16 H 1.09007 * 110.31998 * 241.00181 * 15 14 13 17 17 N 1.46895 * 110.32216 * 118.89758 * 15 14 13 18 18 C 1.46845 * 111.00118 * 180.77936 * 17 15 14 19 19 C 1.53035 * 109.52706 * 174.16282 * 18 17 15 20 20 C 1.53121 * 109.28057 * 59.17986 * 19 18 17 21 21 N 1.46899 * 109.52391 * 182.38187 * 20 19 18 22 22 C 1.53119 * 109.20859 * 302.31643 * 20 19 18 23 23 C 1.46846 * 111.00147 * 56.57331 * 17 15 14 24 24 C 1.48562 * 110.99984 * 64.45489 * 12 2 1 25 25 H 1.09000 * 109.47258 * 294.17439 * 1 2 3 26 26 H 1.09004 * 109.46950 * 54.17287 * 1 2 3 27 27 H 1.08996 * 109.47370 * 174.17582 * 1 2 3 28 28 H 0.97005 * 119.99625 * 179.97438 * 7 6 4 29 29 H 1.08996 * 110.41461 * 82.17880 * 13 12 2 30 30 H 1.09000 * 110.51279 * 319.78916 * 13 12 2 31 31 H 1.08994 * 110.31978 * 264.95837 * 14 13 12 32 32 H 1.09000 * 110.32656 * 142.74430 * 14 13 12 33 33 H 1.09009 * 109.46002 * 54.14400 * 18 17 15 34 34 H 1.09004 * 109.46649 * 294.17810 * 18 17 15 35 35 H 1.09006 * 109.50044 * 299.24246 * 19 18 17 36 36 H 1.09000 * 109.50421 * 179.12380 * 19 18 17 37 37 H 1.09000 * 109.52146 * 62.25077 * 20 19 18 38 38 H 1.00899 * 110.99526 * 179.87886 * 21 20 19 39 39 H 1.00901 * 110.99835 * 303.82624 * 21 20 19 40 40 H 1.09005 * 109.49998 * 177.62273 * 22 20 19 41 41 H 1.08996 * 109.50466 * 297.74012 * 22 20 19 42 42 H 1.09002 * 109.46373 * 305.85513 * 23 17 15 43 43 H 1.08999 * 109.46618 * 65.81874 * 23 17 15 44 44 H 1.08993 * 110.41624 * 40.26021 * 24 12 2 45 45 H 1.09002 * 110.41179 * 277.81516 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5819 -1.6351 -1.1335 6 6 1.7902 -0.1801 -2.4798 7 7 1.2393 1.0086 -2.5941 8 14 2.2446 -1.1500 -4.0103 9 1 1.0583 -1.9045 -4.4886 10 1 2.6982 -0.2159 -5.0718 11 1 3.3386 -2.1008 -3.6871 12 7 2.0196 -0.6925 1.1995 13 6 3.5046 -0.7150 1.2323 14 6 3.8552 -1.8802 2.1825 15 6 2.6239 -2.8090 2.1488 16 1 2.1864 -2.8938 3.1436 17 7 2.9995 -4.1359 1.6427 18 6 1.8338 -5.0272 1.5870 19 6 2.2304 -6.3472 0.9220 20 6 3.3575 -7.0002 1.7269 21 7 3.7815 -8.2395 1.0617 22 6 4.5420 -6.0335 1.8109 23 6 4.0773 -4.7214 2.4501 24 6 1.6331 -2.1268 1.1812 25 1 -0.3634 0.4208 0.9375 26 1 -0.3633 0.6016 -0.8333 27 1 -0.3634 -1.0223 -0.1043 28 1 1.0694 1.3819 -3.4732 29 1 3.8905 0.2254 1.6257 30 1 3.9059 -0.9027 0.2364 31 1 4.0209 -1.5077 3.1933 32 1 4.7381 -2.4090 1.8235 33 1 1.0411 -4.5527 1.0084 34 1 1.4774 -5.2229 2.5984 35 1 2.5739 -6.1538 -0.0943 36 1 1.3689 -7.0144 0.8949 37 1 3.0023 -7.2291 2.7316 38 1 4.5265 -8.6878 1.5736 39 1 3.0015 -8.8668 0.9348 40 1 5.3310 -6.4767 2.4185 41 1 4.9217 -5.8353 0.8086 42 1 4.9143 -4.0249 2.4984 43 1 3.7106 -4.9184 3.4575 44 1 1.7397 -2.5365 0.1768 45 1 0.6098 -2.2494 1.5361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131924269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:39 Heat of formation + Delta-G solvation = 8.512885 kcal Electronic energy + Delta-G solvation = -21923.506834 eV Core-core repulsion = 18975.298147 eV Total energy + Delta-G solvation = -2948.208688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.55460 -37.70239 -35.00285 -33.10009 -31.20835 -30.86285 -29.56711 -27.50215 -26.71480 -25.01498 -23.22879 -22.85627 -21.23218 -19.79365 -19.37638 -19.20232 -16.43489 -16.24834 -15.64990 -15.35257 -15.11364 -14.67649 -14.50097 -13.95046 -13.71756 -13.13220 -12.94538 -12.75025 -12.64556 -12.30950 -12.04225 -11.57839 -11.33905 -11.17762 -11.11859 -10.99055 -10.80376 -10.69970 -10.53222 -10.41874 -10.24797 -10.09764 -9.99671 -9.77192 -9.69277 -9.17094 -8.86169 -8.34285 -8.04059 -7.17723 -5.96635 -4.04134 3.32143 3.39696 3.44643 4.01372 4.31137 4.46522 4.72918 4.82781 5.10956 5.15515 5.31436 5.33898 5.36124 5.36859 5.48462 5.55754 5.59853 5.67574 5.78392 5.81287 5.92760 6.01879 6.10611 6.21688 6.30638 6.35723 6.38424 6.60950 6.66853 6.83303 6.90000 6.97399 6.99579 7.02623 7.15246 7.24531 7.34802 7.41365 7.58251 7.71966 7.96293 8.16777 8.25274 8.45093 9.06009 9.61866 11.07259 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.005854 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.225768 B = 4781.771673 C = 5533.601432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.194 3.806 3 H 0.044 0.956 4 C -0.540 4.540 5 H 0.064 0.936 6 C 0.069 3.931 7 N -0.888 5.888 8 Si 0.884 3.116 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.513 5.513 13 C 0.041 3.959 14 C -0.118 4.118 15 C 0.080 3.920 16 H 0.038 0.962 17 N -0.526 5.526 18 C 0.058 3.942 19 C -0.110 4.110 20 C 0.091 3.909 21 N -0.846 5.846 22 C -0.108 4.108 23 C 0.055 3.945 24 C 0.045 3.955 25 H 0.017 0.983 26 H 0.066 0.934 27 H 0.027 0.973 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.026 0.974 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.338 0.662 39 H 0.339 0.661 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.025 0.975 44 H 0.075 0.925 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -13.755 10.412 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.087 3.913 3 H 0.062 0.938 4 C -0.579 4.579 5 H 0.082 0.918 6 C -0.133 4.133 7 N -0.526 5.526 8 Si 0.712 3.288 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.237 5.237 13 C -0.088 4.088 14 C -0.157 4.157 15 C -0.028 4.028 16 H 0.056 0.944 17 N -0.252 5.252 18 C -0.070 4.070 19 C -0.148 4.148 20 C -0.020 4.020 21 N -0.376 5.376 22 C -0.146 4.146 23 C -0.074 4.074 24 C -0.083 4.083 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.093 0.907 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.899 -12.774 9.646 16.475 hybrid contribution -0.149 -1.512 0.030 1.520 sum 3.750 -14.287 9.676 17.658 Atomic orbital electron populations 1.21670 0.98125 0.99378 0.98867 1.19384 0.92011 0.94910 0.84991 0.93776 1.21708 1.35817 1.08791 0.91597 0.91837 1.24905 0.95021 0.94525 0.98865 1.69953 1.43674 1.15374 1.23588 0.86709 0.78782 0.80124 0.83228 1.20790 1.21374 1.19772 1.65783 1.07154 1.10241 1.40536 1.22888 0.90876 0.96347 0.98699 1.22445 0.97155 0.96502 0.99548 1.22434 0.96491 0.87598 0.96320 0.94399 1.62010 1.08488 1.02307 1.52352 1.22034 0.93330 0.92931 0.98747 1.21613 0.96891 0.95312 1.01000 1.21397 0.95772 0.90248 0.94623 1.58708 1.14326 1.08269 1.56287 1.21616 0.96565 0.94014 1.02441 1.22115 0.95548 0.95829 0.93908 1.22997 0.96058 0.90210 0.99058 0.96390 0.91555 0.95395 0.93025 0.92077 0.91991 0.92328 0.91178 0.89874 0.95600 0.89974 0.92110 0.95485 0.85006 0.84864 0.92233 0.90091 0.90081 0.95675 0.90715 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 8.79 37.16 0.33 -2.64 16 2 C 0.19 4.90 2.32 -68.87 -0.16 4.74 16 3 H 0.04 1.24 8.11 -51.93 -0.42 0.82 16 4 C -0.54 -14.53 6.44 -34.44 -0.22 -14.75 16 5 H 0.06 1.74 5.69 -52.49 -0.30 1.44 16 6 C 0.07 1.92 5.27 -17.82 -0.09 1.82 16 7 N -0.89 -25.46 12.05 55.43 0.67 -24.79 16 8 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.51 -11.17 5.40 -223.41 -1.21 -12.38 16 13 C 0.04 0.81 6.29 -2.18 -0.01 0.79 16 14 C -0.12 -1.92 6.07 -25.34 -0.15 -2.08 16 15 C 0.08 1.32 2.80 -66.33 -0.19 1.13 16 16 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 17 N -0.53 -7.91 4.46 -224.94 -1.00 -8.91 16 18 C 0.06 0.80 5.32 -3.84 -0.02 0.77 16 19 C -0.11 -1.35 5.64 -26.65 -0.15 -1.50 16 20 C 0.09 0.98 3.31 -67.59 -0.22 0.76 16 21 N -0.85 -8.04 9.25 -4.56 -0.04 -8.09 16 22 C -0.11 -1.24 5.69 -26.58 -0.15 -1.39 16 23 C 0.05 0.69 5.18 -3.76 -0.02 0.67 16 24 C 0.05 0.90 3.72 -2.18 -0.01 0.89 16 25 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.74 6.91 -51.93 -0.36 1.38 16 27 H 0.03 0.65 7.36 -51.93 -0.38 0.26 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.39 6.34 -51.93 -0.33 1.06 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.08 6.21 -51.93 -0.32 0.76 16 33 H 0.08 1.23 7.00 -51.92 -0.36 0.87 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.34 2.63 9.04 -39.29 -0.36 2.28 16 39 H 0.34 2.74 9.00 -39.29 -0.35 2.38 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.01 5.97 -51.93 -0.31 0.70 16 43 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 1.68 5.62 -51.93 -0.29 1.38 16 45 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -28.40 331.81 -10.66 -39.06 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.98 Total: 4.38 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.07 Total: -10.78 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -1.58 Total: -54.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.40 -10.66 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131924269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.569 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds