Wall clock time and date at job start Mon Mar 30 2020 05:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47091 * 2 1 4 4 C 1.50693 * 109.47020 * 239.99440 * 2 1 3 5 5 H 1.08001 * 120.00522 * 245.21946 * 4 2 1 6 6 C 1.37883 * 119.99907 * 65.22035 * 4 2 1 7 7 N 1.31511 * 119.99854 * 6.74521 * 6 4 2 8 8 Si 1.86803 * 119.99997 * 186.75158 * 6 4 2 9 9 H 1.48502 * 109.47457 * 94.91958 * 8 6 4 10 10 H 1.48496 * 109.47054 * 214.92224 * 8 6 4 11 11 H 1.48500 * 109.46931 * 334.91700 * 8 6 4 12 12 N 1.46900 * 109.46754 * 119.99786 * 2 1 3 13 13 C 1.48559 * 110.99945 * 179.87290 * 12 2 1 14 14 C 1.54383 * 104.59769 * 200.96013 * 13 12 2 15 15 C 1.54269 * 105.05610 * 23.85166 * 14 13 12 16 16 H 1.09007 * 110.31998 * 241.00181 * 15 14 13 17 17 N 1.46895 * 110.32216 * 118.89758 * 15 14 13 18 18 C 1.46845 * 111.00118 * 180.77936 * 17 15 14 19 19 C 1.53035 * 109.52706 * 174.16282 * 18 17 15 20 20 C 1.53121 * 109.28057 * 59.17986 * 19 18 17 21 21 N 1.46899 * 109.52391 * 182.38187 * 20 19 18 22 22 C 1.53119 * 109.20859 * 302.31643 * 20 19 18 23 23 C 1.46846 * 111.00147 * 56.57331 * 17 15 14 24 24 C 1.48562 * 110.99984 * 64.45489 * 12 2 1 25 25 H 1.09000 * 109.47258 * 294.17439 * 1 2 3 26 26 H 1.09004 * 109.46950 * 54.17287 * 1 2 3 27 27 H 1.08996 * 109.47370 * 174.17582 * 1 2 3 28 28 H 0.97005 * 119.99625 * 179.97438 * 7 6 4 29 29 H 1.08996 * 110.41461 * 82.17880 * 13 12 2 30 30 H 1.09000 * 110.51279 * 319.78916 * 13 12 2 31 31 H 1.08994 * 110.31978 * 264.95837 * 14 13 12 32 32 H 1.09000 * 110.32656 * 142.74430 * 14 13 12 33 33 H 1.09009 * 109.46002 * 54.14400 * 18 17 15 34 34 H 1.09004 * 109.46649 * 294.17810 * 18 17 15 35 35 H 1.09006 * 109.50044 * 299.24246 * 19 18 17 36 36 H 1.09000 * 109.50421 * 179.12380 * 19 18 17 37 37 H 1.09000 * 109.52146 * 62.25077 * 20 19 18 38 38 H 1.00899 * 110.99526 * 179.87886 * 21 20 19 39 39 H 1.00901 * 110.99835 * 303.82624 * 21 20 19 40 40 H 1.09005 * 109.49998 * 177.62273 * 22 20 19 41 41 H 1.08996 * 109.50466 * 297.74012 * 22 20 19 42 42 H 1.09002 * 109.46373 * 305.85513 * 23 17 15 43 43 H 1.08999 * 109.46618 * 65.81874 * 23 17 15 44 44 H 1.08993 * 110.41624 * 40.26021 * 24 12 2 45 45 H 1.09002 * 110.41179 * 277.81516 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5819 -1.6351 -1.1335 6 6 1.7902 -0.1801 -2.4798 7 7 1.2393 1.0086 -2.5941 8 14 2.2446 -1.1500 -4.0103 9 1 1.0583 -1.9045 -4.4886 10 1 2.6982 -0.2159 -5.0718 11 1 3.3386 -2.1008 -3.6871 12 7 2.0196 -0.6925 1.1995 13 6 3.5046 -0.7150 1.2323 14 6 3.8552 -1.8802 2.1825 15 6 2.6239 -2.8090 2.1488 16 1 2.1864 -2.8938 3.1436 17 7 2.9995 -4.1359 1.6427 18 6 1.8338 -5.0272 1.5870 19 6 2.2304 -6.3472 0.9220 20 6 3.3575 -7.0002 1.7269 21 7 3.7815 -8.2395 1.0617 22 6 4.5420 -6.0335 1.8109 23 6 4.0773 -4.7214 2.4501 24 6 1.6331 -2.1268 1.1812 25 1 -0.3634 0.4208 0.9375 26 1 -0.3633 0.6016 -0.8333 27 1 -0.3634 -1.0223 -0.1043 28 1 1.0694 1.3819 -3.4732 29 1 3.8905 0.2254 1.6257 30 1 3.9059 -0.9027 0.2364 31 1 4.0209 -1.5077 3.1933 32 1 4.7381 -2.4090 1.8235 33 1 1.0411 -4.5527 1.0084 34 1 1.4774 -5.2229 2.5984 35 1 2.5739 -6.1538 -0.0943 36 1 1.3689 -7.0144 0.8949 37 1 3.0023 -7.2291 2.7316 38 1 4.5265 -8.6878 1.5736 39 1 3.0015 -8.8668 0.9348 40 1 5.3310 -6.4767 2.4185 41 1 4.9217 -5.8353 0.8086 42 1 4.9143 -4.0249 2.4984 43 1 3.7106 -4.9184 3.4575 44 1 1.7397 -2.5365 0.1768 45 1 0.6098 -2.2494 1.5361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131924269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:39 Heat of formation + Delta-G solvation = -12.930682 kcal Electronic energy + Delta-G solvation = -21924.436697 eV Core-core repulsion = 18975.298147 eV Total energy + Delta-G solvation = -2949.138550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80361 -39.09310 -36.31190 -34.79889 -32.85011 -31.93311 -30.82152 -29.12043 -28.15978 -27.12740 -24.37517 -23.92841 -22.81803 -21.17358 -20.85906 -20.51571 -18.33111 -17.64826 -16.89358 -16.44462 -16.33695 -16.00339 -15.79052 -15.38954 -15.12973 -14.63444 -14.49774 -14.12809 -14.00344 -13.82700 -13.27743 -13.09468 -13.05999 -12.90763 -12.57182 -12.50532 -12.15232 -12.09991 -12.04054 -11.93035 -11.88841 -11.64255 -11.49030 -11.39529 -11.22144 -11.11264 -10.49051 -9.59140 -9.16219 -9.04869 -8.08140 -6.22981 1.36137 1.38764 1.48450 2.40947 2.87303 3.16175 3.53093 3.67841 3.72768 3.90464 3.91638 3.95409 4.25097 4.30805 4.34092 4.43868 4.58684 4.61623 4.67464 4.76281 4.80457 4.85315 4.90095 4.94393 4.95510 5.05582 5.07987 5.12059 5.16326 5.22115 5.24501 5.27082 5.34649 5.44476 5.54730 5.62590 5.88521 6.15959 6.20136 6.26523 6.28431 6.37888 6.48634 6.64073 6.96346 7.45665 8.93312 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.005854 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.225768 B = 4781.771673 C = 5533.601432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.198 3.802 3 H 0.008 0.992 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.916 5.916 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.515 5.515 13 C 0.038 3.962 14 C -0.106 4.106 15 C 0.091 3.909 16 H 0.052 0.948 17 N -0.545 5.545 18 C 0.059 3.941 19 C -0.106 4.106 20 C 0.096 3.904 21 N -0.854 5.854 22 C -0.104 4.104 23 C 0.055 3.945 24 C 0.050 3.950 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.349 0.651 39 H 0.348 0.652 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.044 0.956 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -15.813 11.932 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.026 0.974 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.555 5.555 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.238 5.238 13 C -0.091 4.091 14 C -0.144 4.144 15 C -0.018 4.018 16 H 0.070 0.930 17 N -0.270 5.270 18 C -0.069 4.069 19 C -0.144 4.144 20 C -0.015 4.015 21 N -0.386 5.386 22 C -0.142 4.142 23 C -0.073 4.073 24 C -0.078 4.078 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.573 -14.856 11.177 19.145 hybrid contribution -0.346 -0.877 -0.419 1.032 sum 4.227 -15.732 10.757 19.522 Atomic orbital electron populations 1.21488 0.97441 0.99110 0.98711 1.19170 0.92514 0.93270 0.86022 0.97354 1.21848 1.35265 1.08292 0.92485 0.92720 1.25581 0.95290 0.95330 1.01514 1.70057 1.44787 1.16539 1.24164 0.85786 0.78460 0.78814 0.80075 1.20285 1.20900 1.19838 1.65703 1.08409 1.11479 1.38250 1.22910 0.89575 0.98414 0.98187 1.22387 0.97394 0.94834 0.99765 1.22248 0.95476 0.88342 0.95729 0.92983 1.61957 1.09597 1.02090 1.53403 1.22019 0.92509 0.93118 0.99303 1.21556 0.98188 0.95109 0.99545 1.21287 0.94821 0.90512 0.94897 1.58643 1.15177 1.08256 1.56513 1.21578 0.97407 0.93860 1.01380 1.22167 0.94652 0.96210 0.94225 1.22922 0.97385 0.89017 0.98508 0.94703 0.93906 0.95098 0.92968 0.91601 0.95155 0.89827 0.90190 0.91814 0.94140 0.92703 0.90549 0.94215 0.83712 0.83876 0.89997 0.92482 0.89891 0.94263 0.93735 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.39 8.79 71.98 0.63 -4.75 16 2 C 0.20 10.27 2.32 44.17 0.10 10.37 16 3 H 0.01 0.50 8.11 -2.39 -0.02 0.48 16 4 C -0.54 -29.81 6.44 25.60 0.16 -29.65 16 5 H 0.05 3.08 5.69 -2.91 -0.02 3.07 16 6 C 0.02 1.27 5.27 84.66 0.45 1.71 16 7 N -0.92 -53.74 12.05 21.45 0.26 -53.48 16 8 Si 0.94 44.93 29.54 68.60 2.03 46.96 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 12 N -0.51 -22.51 5.40 -860.74 -4.65 -27.16 16 13 C 0.04 1.50 6.29 86.45 0.54 2.05 16 14 C -0.11 -3.23 6.07 31.49 0.19 -3.04 16 15 C 0.09 2.83 2.80 45.81 0.13 2.95 16 16 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 17 N -0.54 -15.51 4.46 -865.59 -3.86 -19.36 16 18 C 0.06 1.53 5.32 86.33 0.46 1.98 16 19 C -0.11 -2.43 5.64 30.65 0.17 -2.26 16 20 C 0.10 1.83 3.31 45.00 0.15 1.98 16 21 N -0.85 -14.16 9.25 -168.35 -1.56 -15.72 16 22 C -0.10 -2.13 5.69 30.69 0.17 -1.96 16 23 C 0.06 1.24 5.18 86.37 0.45 1.69 16 24 C 0.05 1.98 3.72 86.45 0.32 2.30 16 25 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 2.29 6.91 -2.39 -0.02 2.27 16 27 H 0.03 1.45 7.36 -2.39 -0.02 1.43 16 28 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.03 1.39 6.34 -2.39 -0.02 1.38 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 32 H 0.08 2.31 6.21 -2.39 -0.01 2.29 16 33 H 0.06 1.87 7.00 -2.38 -0.02 1.86 16 34 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.35 4.46 9.04 -89.70 -0.81 3.65 16 39 H 0.35 4.76 9.00 -89.69 -0.81 3.96 16 40 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.82 5.97 -2.39 -0.01 1.81 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.04 2.04 5.62 -2.39 -0.01 2.02 16 45 H 0.06 2.30 7.84 -2.39 -0.02 2.28 16 Total: -1.00 -61.82 331.81 -4.49 -66.31 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -0.64 Total: 19.07 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 3.93 Total: -16.62 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -9.80 Total: -115.72 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -61.82 -4.49 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131924269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.376 kcal (2) G-P(sol) polarization free energy of solvation -61.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds