Wall clock time and date at job start Mon Mar 30 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48506 * 109.46791 * 239.99744 * 3 2 1 5 5 H 1.48494 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47213 * 120.00180 * 3 2 1 7 7 C 1.37875 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46862 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46882 * 180.02562 * 10 9 7 12 12 C 1.47843 * 111.00395 * 69.15680 * 11 10 9 13 13 C 1.54901 * 104.79973 * 146.36263 * 12 11 10 14 14 C 1.55138 * 101.65195 * 322.93133 * 13 12 11 15 15 H 1.08993 * 110.85794 * 277.20078 * 14 13 12 16 16 N 1.46903 * 110.70603 * 154.03392 * 14 13 12 17 17 C 1.46845 * 110.99996 * 66.40131 * 16 14 13 18 18 C 1.53033 * 109.52418 * 185.83790 * 17 16 14 19 19 C 1.53117 * 109.28046 * 300.82290 * 18 17 16 20 20 N 1.46906 * 109.52439 * 177.55928 * 19 18 17 21 21 C 1.53116 * 109.16243 * 57.65538 * 19 18 17 22 22 C 1.46846 * 111.00309 * 190.61102 * 16 14 13 23 23 C 1.47443 * 111.00162 * 190.00305 * 11 10 9 24 24 H 0.96998 * 120.00000 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47150 * 60.00419 * 9 7 2 26 26 H 1.08998 * 109.47417 * 299.99752 * 9 7 2 27 27 H 1.09004 * 109.47353 * 60.00603 * 10 9 7 28 28 H 1.08994 * 109.47203 * 299.99777 * 10 9 7 29 29 H 1.09002 * 110.37321 * 265.19553 * 12 11 10 30 30 H 1.09001 * 110.37088 * 27.52983 * 12 11 10 31 31 H 1.08998 * 110.99297 * 204.84047 * 13 12 11 32 32 H 1.09005 * 110.98795 * 81.01860 * 13 12 11 33 33 H 1.09002 * 109.46378 * 65.82091 * 17 16 14 34 34 H 1.09001 * 109.45167 * 305.84810 * 17 16 14 35 35 H 1.08997 * 109.50447 * 180.87690 * 18 17 16 36 36 H 1.09006 * 109.53754 * 60.78214 * 18 17 16 37 37 H 1.08997 * 109.52390 * 297.68192 * 19 18 17 38 38 H 1.00896 * 111.00309 * 179.97438 * 20 19 18 39 39 H 1.00902 * 110.99923 * 303.95786 * 20 19 18 40 40 H 1.08998 * 109.50614 * 62.28551 * 21 19 18 41 41 H 1.08995 * 109.50666 * 182.40918 * 21 19 18 42 42 H 1.08998 * 109.46205 * 294.18324 * 22 16 14 43 43 H 1.09005 * 109.46124 * 54.14319 * 22 16 14 44 44 H 1.08994 * 109.89368 * 117.33086 * 23 11 10 45 45 H 1.09007 * 110.01891 * 356.21577 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0027 11 7 1.5107 -4.9343 0.0033 12 6 0.8209 -5.1484 -1.2867 13 6 0.8633 -6.6809 -1.5085 14 6 2.2638 -7.0402 -0.9461 15 1 3.0386 -6.8636 -1.6922 16 7 2.2966 -8.4349 -0.4861 17 6 2.1481 -9.3645 -1.6131 18 6 2.0408 -10.7965 -1.0843 19 6 3.3002 -11.1349 -0.2819 20 7 3.1773 -12.4878 0.2773 21 6 3.4578 -10.1231 0.8565 22 6 3.5241 -8.7106 0.2713 23 6 2.4203 -6.0696 0.2434 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8719 -3.6036 0.8927 28 1 2.8719 -3.6051 -0.8873 29 1 -0.2109 -4.8020 -1.2274 30 1 1.3492 -4.6340 -2.0895 31 1 0.7942 -6.9240 -2.5688 32 1 0.0759 -7.1792 -0.9429 33 1 3.0159 -9.2832 -2.2677 34 1 1.2465 -9.1154 -2.1727 35 1 1.9462 -11.4876 -1.9218 36 1 1.1652 -10.8828 -0.4407 37 1 4.1716 -11.0886 -0.9349 38 1 3.9972 -12.7343 0.8112 39 1 2.3419 -12.5733 0.8367 40 1 2.6046 -10.1980 1.5307 41 1 4.3757 -10.3330 1.4055 42 1 4.3855 -8.6323 -0.3920 43 1 3.6220 -7.9866 1.0803 44 1 2.1484 -6.5729 1.1711 45 1 3.4502 -5.7169 0.3011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131956737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:59 Heat of formation + Delta-G solvation = -25.957386 kcal Electronic energy + Delta-G solvation = -20866.792307 eV Core-core repulsion = 17917.088876 eV Total energy + Delta-G solvation = -2949.703431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.88059 -39.18228 -36.24823 -35.16581 -33.12188 -32.02742 -30.80244 -30.21785 -28.25054 -26.14124 -24.34556 -23.82416 -22.91875 -21.40484 -21.22376 -20.76606 -18.57587 -17.72285 -16.90196 -16.63810 -16.41618 -15.96387 -15.77949 -15.54909 -15.17812 -14.89638 -14.54508 -14.29743 -14.19066 -13.80184 -13.68047 -13.45316 -13.18408 -12.98868 -12.81037 -12.48680 -12.37587 -12.24488 -12.13535 -12.01721 -11.83637 -11.75431 -11.62148 -11.35620 -11.26714 -11.21957 -10.55905 -9.58925 -9.34721 -9.16428 -8.20630 -6.32712 1.39145 1.42689 1.50706 2.39458 2.76249 3.12362 3.16796 3.49633 3.58297 3.80729 3.83732 3.94422 4.09088 4.19231 4.27039 4.35949 4.37825 4.42244 4.43807 4.55244 4.62524 4.66030 4.70918 4.76301 4.88426 4.90325 4.93354 4.96977 5.02050 5.08276 5.12780 5.19616 5.21004 5.39318 5.44168 5.63738 5.77753 6.06206 6.09119 6.14375 6.20781 6.25510 6.32273 6.61124 6.84303 7.36437 8.91443 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.051388 B = 0.003114 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.743813 B = 8990.584450 C = 9286.921865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.039 3.961 10 C 0.076 3.924 11 N -0.544 5.544 12 C 0.045 3.955 13 C -0.103 4.103 14 C 0.073 3.927 15 H 0.046 0.954 16 N -0.529 5.529 17 C 0.056 3.944 18 C -0.102 4.102 19 C 0.093 3.907 20 N -0.849 5.849 21 C -0.140 4.140 22 C 0.053 3.947 23 C 0.054 3.946 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.010 1.010 27 H 0.060 0.940 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.348 0.652 39 H 0.345 0.655 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 -23.533 -1.830 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.001 3.999 10 C -0.051 4.051 11 N -0.268 5.268 12 C -0.083 4.083 13 C -0.142 4.142 14 C -0.037 4.037 15 H 0.064 0.936 16 N -0.255 5.255 17 C -0.073 4.073 18 C -0.140 4.140 19 C -0.019 4.019 20 N -0.378 5.378 21 C -0.180 4.180 22 C -0.075 4.075 23 C -0.074 4.074 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.234 -23.736 -1.871 24.613 hybrid contribution 1.437 1.899 -0.132 2.385 sum 7.672 -21.838 -2.003 23.232 Atomic orbital electron populations 1.70111 1.07860 1.27892 1.51273 1.25989 0.95774 1.03388 0.94563 0.85471 0.78253 0.77915 0.79215 1.19112 1.20721 1.19100 1.21601 0.93493 0.92313 1.51162 0.92199 1.18859 0.94139 0.91911 0.94945 1.22176 0.95288 0.88874 0.98799 1.63559 1.28527 1.02022 1.32704 1.22959 0.99165 0.96576 0.89569 1.22666 0.96650 0.93309 1.01525 1.22725 0.97170 0.88372 0.95406 0.93648 1.62007 1.37480 1.01530 1.24435 1.22121 1.01186 0.92268 0.91675 1.21524 0.97694 0.94502 1.00259 1.21438 0.98294 0.87000 0.95151 1.58918 1.08685 1.25423 1.44774 1.22384 1.02429 0.94305 0.98893 1.22092 0.89971 0.97928 0.97549 1.22852 0.94858 0.90687 0.98996 0.92703 0.98955 0.99129 0.92116 0.96048 0.91737 0.94556 0.89347 0.89810 0.94907 0.90017 0.90441 0.91555 0.90992 0.83888 0.84193 0.91571 0.90567 0.94985 0.90928 0.90075 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.95 9.11 25.60 0.23 -31.72 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.15 5.02 29.85 0.15 2.30 16 10 C 0.08 3.37 4.51 86.30 0.39 3.76 16 11 N -0.54 -20.67 5.16 -885.54 -4.57 -25.24 16 12 C 0.05 1.56 5.78 86.77 0.50 2.06 16 13 C -0.10 -2.64 5.66 31.98 0.18 -2.46 16 14 C 0.07 1.80 2.64 46.10 0.12 1.92 16 15 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 16 N -0.53 -10.98 4.49 -864.23 -3.88 -14.86 16 17 C 0.06 0.97 5.34 86.32 0.46 1.43 16 18 C -0.10 -1.53 5.64 30.64 0.17 -1.36 16 19 C 0.09 1.30 3.32 44.99 0.15 1.45 16 20 N -0.85 -10.26 9.26 -168.35 -1.56 -11.82 16 21 C -0.14 -2.05 5.67 30.65 0.17 -1.87 16 22 C 0.05 0.98 5.21 86.33 0.45 1.43 16 23 C 0.05 1.62 5.28 86.65 0.46 2.07 16 24 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 25 H -0.01 -0.47 7.49 -2.39 -0.02 -0.49 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 27 H 0.06 2.62 8.03 -2.39 -0.02 2.60 16 28 H 0.02 0.93 7.85 -2.39 -0.02 0.91 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.04 1.30 7.62 -2.39 -0.02 1.28 16 31 H 0.09 1.88 7.96 -2.39 -0.02 1.86 16 32 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 1.39 7.07 -2.39 -0.02 1.37 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.35 3.26 9.04 -89.70 -0.81 2.45 16 39 H 0.35 3.72 8.98 -89.69 -0.81 2.92 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 1.45 6.44 -2.38 -0.02 1.44 16 44 H 0.08 2.42 7.33 -2.39 -0.02 2.40 16 45 H 0.05 1.45 7.56 -2.38 -0.02 1.43 16 Total: -1.00 -65.49 342.68 -4.46 -69.95 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -0.66 Total: 13.27 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 3.90 Total: -20.47 kcal Atomic # 7 Polarization: -99.81 SS G_CDS: -9.72 Total: -109.54 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.49 -4.46 -69.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131956737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.990 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds