Wall clock time and date at job start Mon Mar 30 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46957 * 110.99734 * 2 1 4 4 C 1.53057 * 109.36091 * 176.81538 * 3 2 1 5 5 N 1.46957 * 109.36584 * 58.40740 * 4 3 2 6 6 C 1.46901 * 110.99832 * 176.81302 * 5 4 3 7 7 H 1.09005 * 109.36373 * 312.73902 * 6 5 4 8 8 C 1.50877 * 109.36878 * 72.48552 * 6 5 4 9 9 C 1.52726 * 109.27474 * 212.18005 * 8 6 5 10 10 C 1.47099 * 114.22488 * 274.83317 * 9 8 6 11 11 C 1.54859 * 110.32268 * 62.83089 * 10 9 8 12 12 N 1.44576 * 109.60582 * 288.73508 * 11 10 9 13 13 C 1.36945 * 118.64304 * 270.70804 * 12 11 10 14 14 H 1.07995 * 119.99902 * 28.14031 * 13 12 11 15 15 C 1.38805 * 119.99978 * 208.14340 * 13 12 11 16 16 N 1.31620 * 120.00317 * 15.28362 * 15 13 12 17 17 Si 1.86803 * 120.00171 * 195.28105 * 15 13 12 18 18 H 1.48500 * 109.46898 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46856 * 119.99900 * 17 15 13 20 20 H 1.48492 * 109.47305 * 240.00103 * 17 15 13 21 21 C 1.47602 * 122.71628 * 90.72466 * 12 11 10 22 22 C 1.46965 * 110.87524 * 300.67575 * 5 4 3 23 23 C 1.46967 * 110.99842 * 236.20800 * 2 1 3 24 24 H 1.09008 * 109.46909 * 183.79490 * 1 2 3 25 25 H 1.09001 * 109.47391 * 63.79344 * 1 2 3 26 26 H 1.09002 * 109.46967 * 303.79281 * 1 2 3 27 27 H 1.08994 * 109.49069 * 296.78320 * 3 2 1 28 28 H 1.08999 * 109.49037 * 56.85032 * 3 2 1 29 29 H 1.09004 * 109.48992 * 298.43306 * 4 3 2 30 30 H 1.09005 * 109.50405 * 178.38525 * 4 3 2 31 31 H 1.09003 * 109.48993 * 332.04426 * 8 6 5 32 32 H 1.08998 * 109.49257 * 92.11283 * 8 6 5 33 33 H 1.08995 * 108.54376 * 153.62279 * 9 8 6 34 34 H 1.08999 * 108.46591 * 35.98049 * 9 8 6 35 35 H 1.09000 * 109.32668 * 302.56955 * 10 9 8 36 36 H 1.09005 * 109.18701 * 183.00338 * 10 9 8 37 37 H 1.09005 * 109.44986 * 168.69202 * 11 10 9 38 38 H 1.09004 * 109.43146 * 48.76305 * 11 10 9 39 39 H 0.97000 * 120.00553 * 180.02562 * 16 15 13 40 40 H 1.09005 * 108.95191 * 197.18946 * 21 12 11 41 41 H 1.08995 * 108.87937 * 78.50852 * 21 12 11 42 42 H 1.08994 * 109.48940 * 299.35425 * 22 5 4 43 43 H 1.08999 * 109.48480 * 179.29182 * 22 5 4 44 44 H 1.09000 * 109.48325 * 303.15471 * 23 2 1 45 45 H 1.08995 * 109.48772 * 63.19277 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 0.0802 5 7 4.0501 0.5660 -1.0600 6 6 5.5191 0.5660 -1.0600 7 1 5.8805 1.5819 -0.9000 8 6 6.0194 -0.3238 0.0510 9 6 7.3378 0.2311 0.5863 10 6 8.5248 -0.2000 -0.1680 11 6 8.4535 0.3185 -1.6254 12 7 7.4317 -0.4051 -2.3483 13 6 7.7793 -1.5607 -2.9957 14 1 8.6017 -2.1579 -2.6304 15 6 7.0747 -1.9645 -4.1214 16 7 6.2859 -1.1146 -4.7441 17 14 7.2461 -3.7142 -4.7528 18 1 8.1858 -4.4649 -3.8818 19 1 5.9181 -4.3788 -4.7359 20 1 7.7700 -3.6901 -6.1420 21 6 6.0295 0.0504 -2.4178 22 6 3.5234 -0.8060 -1.0600 23 6 1.9956 -0.7631 -1.1403 24 1 -0.3633 -1.0255 0.0680 25 1 -0.3634 0.4538 -0.9220 26 1 -0.3633 0.5716 0.8541 27 1 1.6936 1.8774 -0.9172 28 1 1.6013 1.9128 0.8603 29 1 3.8254 0.8479 1.0105 30 1 3.9181 2.3448 0.0515 31 1 5.2838 -0.3505 0.8548 32 1 6.1758 -1.3319 -0.3330 33 1 7.4521 -0.0864 1.6227 34 1 7.2892 1.3197 0.5624 35 1 8.5722 -1.2890 -0.1744 36 1 9.4187 0.1972 0.3130 37 1 9.4175 0.1683 -2.1116 38 1 8.2111 1.3812 -1.6208 39 1 5.7932 -1.3968 -5.5305 40 1 5.4025 -0.7815 -2.7389 41 1 5.9553 0.8529 -3.1517 42 1 3.8253 -1.3114 -0.1427 43 1 3.9177 -1.3468 -1.9203 44 1 1.6013 -1.7788 -1.1112 45 1 1.6933 -0.2821 -2.0705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174876997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:03 Heat of formation + Delta-G solvation = 38.583498 kcal Electronic energy + Delta-G solvation = -22443.596585 eV Core-core repulsion = 19496.691857 eV Total energy + Delta-G solvation = -2946.904728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.54741 -37.54161 -35.00333 -33.50106 -30.83205 -30.70354 -30.31412 -27.30292 -25.94528 -24.13223 -23.74483 -23.32164 -22.19910 -20.10898 -19.42041 -18.43950 -16.60949 -15.88934 -15.30638 -14.95129 -14.77072 -14.61474 -14.54216 -14.14879 -13.58779 -13.44228 -12.99551 -12.68925 -12.39056 -12.33308 -12.14000 -11.94182 -11.56587 -11.39235 -11.07716 -11.02011 -10.94567 -10.74617 -10.63179 -10.48605 -10.13643 -10.03512 -9.90553 -9.77259 -9.56213 -9.35498 -8.35132 -8.29645 -7.68473 -6.57526 -5.72400 -3.18095 3.38255 3.46953 3.48809 4.02660 4.30023 4.56319 5.07870 5.11781 5.27830 5.36382 5.39117 5.42520 5.52158 5.57142 5.65113 5.69493 5.72135 5.77678 5.80174 5.83768 5.96314 6.05384 6.08218 6.15007 6.20809 6.34958 6.38719 6.48970 6.54169 6.70612 6.74911 6.83794 6.89597 6.99964 7.07688 7.10803 7.16985 7.37117 7.58581 7.70940 7.85583 7.95734 8.53900 9.30230 9.96965 10.42836 11.33894 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.006969 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.071970 B = 4016.565996 C = 5100.531548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.546 5.546 3 C 0.059 3.941 4 C 0.056 3.944 5 N -0.529 5.529 6 C 0.064 3.936 7 H 0.063 0.937 8 C -0.135 4.135 9 C -0.097 4.097 10 C -0.146 4.146 11 C 0.157 3.843 12 N -0.589 5.589 13 C -0.258 4.258 14 H 0.063 0.937 15 C 0.007 3.993 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.291 1.291 21 C 0.191 3.809 22 C 0.055 3.945 23 C 0.058 3.942 24 H 0.065 0.935 25 H 0.024 0.976 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.030 0.970 39 H 0.252 0.748 40 H 0.079 0.921 41 H 0.028 0.972 42 H 0.041 0.959 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 3.887 10.088 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.069 4.069 4 C -0.072 4.072 5 N -0.253 5.253 6 C -0.046 4.046 7 H 0.081 0.919 8 C -0.174 4.174 9 C -0.135 4.135 10 C -0.187 4.187 11 C 0.029 3.971 12 N -0.310 5.310 13 C -0.388 4.388 14 H 0.081 0.919 15 C -0.192 4.192 16 N -0.542 5.542 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.066 3.934 22 C -0.073 4.073 23 C -0.070 4.070 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.599 3.895 9.912 13.083 hybrid contribution -0.022 -0.917 -0.302 0.966 sum -7.620 2.978 9.610 12.621 Atomic orbital electron populations 1.22322 0.87802 1.01910 1.00184 1.62187 1.07302 1.14110 1.43540 1.22151 0.95181 0.89151 1.00439 1.22110 0.93567 0.98468 0.93086 1.62274 1.08374 1.13566 1.41073 1.22355 0.84998 0.98497 0.98712 0.91866 1.21670 0.96018 1.02018 0.97645 1.20266 0.95634 0.99590 0.98050 1.21494 0.95967 1.01649 0.99549 1.20696 0.92751 0.93670 0.89962 1.43590 1.02907 1.26303 1.58230 1.19199 1.16029 0.98373 1.05168 0.91888 1.25053 1.00461 0.97843 0.95869 1.70087 1.31872 1.32583 1.19687 0.86330 0.77415 0.85207 0.78487 1.20334 1.21623 1.21755 1.20931 0.84430 0.99077 0.88978 1.22175 0.92844 0.90408 1.01896 1.22205 0.95564 0.97814 0.91439 0.91589 0.95770 0.91747 0.94144 0.90973 0.94291 0.90877 0.93650 0.90640 0.94398 0.93655 0.92273 0.93753 0.93748 0.95173 0.93774 0.90290 0.95396 0.94094 0.89094 0.90777 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.60 60.06 0.58 0.86 16 2 N -0.55 -7.44 4.97 -242.75 -1.21 -8.65 16 3 C 0.06 0.78 5.62 -3.76 -0.02 0.76 16 4 C 0.06 0.83 5.35 -3.76 -0.02 0.81 16 5 N -0.53 -9.29 4.64 -227.16 -1.05 -10.34 16 6 C 0.06 1.22 2.01 -68.28 -0.14 1.08 16 7 H 0.06 1.21 7.13 -51.93 -0.37 0.84 16 8 C -0.13 -2.44 3.62 -27.94 -0.10 -2.54 16 9 C -0.10 -1.64 5.17 -29.70 -0.15 -1.80 16 10 C -0.15 -2.65 5.74 -28.58 -0.16 -2.81 16 11 C 0.16 3.31 5.65 -4.09 -0.02 3.29 16 12 N -0.59 -14.46 2.26 -172.09 -0.39 -14.85 16 13 C -0.26 -6.96 9.42 -15.06 -0.14 -7.10 16 14 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 15 C 0.01 0.18 4.87 -17.43 -0.08 0.10 16 16 N -0.90 -25.79 11.11 55.49 0.62 -25.17 16 17 Si 0.90 21.60 29.58 -169.99 -5.03 16.57 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.19 4.53 4.21 -2.94 -0.01 4.51 16 22 C 0.05 0.95 4.93 -3.77 -0.02 0.93 16 23 C 0.06 0.86 5.62 -3.76 -0.02 0.84 16 24 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.04 0.59 6.62 -51.93 -0.34 0.25 16 30 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 31 H 0.04 0.78 5.52 -51.93 -0.29 0.49 16 32 H 0.07 1.58 7.48 -51.93 -0.39 1.20 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.04 0.73 7.34 -51.93 -0.38 0.35 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.04 0.95 7.99 -51.93 -0.41 0.54 16 38 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.08 2.06 4.35 -51.93 -0.23 1.83 16 41 H 0.03 0.75 8.02 -51.93 -0.42 0.33 16 42 H 0.04 0.72 6.57 -51.93 -0.34 0.38 16 43 H 0.09 1.81 6.21 -51.93 -0.32 1.48 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -28.26 326.61 -10.56 -38.83 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.10 Total: -0.23 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.32 Total: -1.07 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -2.03 Total: -59.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.26 -10.56 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174876997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.410 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds