Wall clock time and date at job start Mon Mar 30 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46957 * 110.99734 * 2 1 4 4 C 1.53057 * 109.36091 * 176.81538 * 3 2 1 5 5 N 1.46957 * 109.36584 * 58.40740 * 4 3 2 6 6 C 1.46901 * 110.99832 * 176.81302 * 5 4 3 7 7 H 1.09005 * 109.36373 * 312.73902 * 6 5 4 8 8 C 1.50877 * 109.36878 * 72.48552 * 6 5 4 9 9 C 1.52726 * 109.27474 * 212.18005 * 8 6 5 10 10 C 1.47099 * 114.22488 * 274.83317 * 9 8 6 11 11 C 1.54859 * 110.32268 * 62.83089 * 10 9 8 12 12 N 1.44576 * 109.60582 * 288.73508 * 11 10 9 13 13 C 1.36945 * 118.64304 * 270.70804 * 12 11 10 14 14 H 1.07995 * 119.99902 * 28.14031 * 13 12 11 15 15 C 1.38805 * 119.99978 * 208.14340 * 13 12 11 16 16 N 1.31620 * 120.00317 * 15.28362 * 15 13 12 17 17 Si 1.86803 * 120.00171 * 195.28105 * 15 13 12 18 18 H 1.48500 * 109.46898 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46856 * 119.99900 * 17 15 13 20 20 H 1.48492 * 109.47305 * 240.00103 * 17 15 13 21 21 C 1.47602 * 122.71628 * 90.72466 * 12 11 10 22 22 C 1.46965 * 110.87524 * 300.67575 * 5 4 3 23 23 C 1.46967 * 110.99842 * 236.20800 * 2 1 3 24 24 H 1.09008 * 109.46909 * 183.79490 * 1 2 3 25 25 H 1.09001 * 109.47391 * 63.79344 * 1 2 3 26 26 H 1.09002 * 109.46967 * 303.79281 * 1 2 3 27 27 H 1.08994 * 109.49069 * 296.78320 * 3 2 1 28 28 H 1.08999 * 109.49037 * 56.85032 * 3 2 1 29 29 H 1.09004 * 109.48992 * 298.43306 * 4 3 2 30 30 H 1.09005 * 109.50405 * 178.38525 * 4 3 2 31 31 H 1.09003 * 109.48993 * 332.04426 * 8 6 5 32 32 H 1.08998 * 109.49257 * 92.11283 * 8 6 5 33 33 H 1.08995 * 108.54376 * 153.62279 * 9 8 6 34 34 H 1.08999 * 108.46591 * 35.98049 * 9 8 6 35 35 H 1.09000 * 109.32668 * 302.56955 * 10 9 8 36 36 H 1.09005 * 109.18701 * 183.00338 * 10 9 8 37 37 H 1.09005 * 109.44986 * 168.69202 * 11 10 9 38 38 H 1.09004 * 109.43146 * 48.76305 * 11 10 9 39 39 H 0.97000 * 120.00553 * 180.02562 * 16 15 13 40 40 H 1.09005 * 108.95191 * 197.18946 * 21 12 11 41 41 H 1.08995 * 108.87937 * 78.50852 * 21 12 11 42 42 H 1.08994 * 109.48940 * 299.35425 * 22 5 4 43 43 H 1.08999 * 109.48480 * 179.29182 * 22 5 4 44 44 H 1.09000 * 109.48325 * 303.15471 * 23 2 1 45 45 H 1.08995 * 109.48772 * 63.19277 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5235 1.3291 0.0802 5 7 4.0501 0.5660 -1.0600 6 6 5.5191 0.5660 -1.0600 7 1 5.8805 1.5819 -0.9000 8 6 6.0194 -0.3238 0.0510 9 6 7.3378 0.2311 0.5863 10 6 8.5248 -0.2000 -0.1680 11 6 8.4535 0.3185 -1.6254 12 7 7.4317 -0.4051 -2.3483 13 6 7.7793 -1.5607 -2.9957 14 1 8.6017 -2.1579 -2.6304 15 6 7.0747 -1.9645 -4.1214 16 7 6.2859 -1.1146 -4.7441 17 14 7.2461 -3.7142 -4.7528 18 1 8.1858 -4.4649 -3.8818 19 1 5.9181 -4.3788 -4.7359 20 1 7.7700 -3.6901 -6.1420 21 6 6.0295 0.0504 -2.4178 22 6 3.5234 -0.8060 -1.0600 23 6 1.9956 -0.7631 -1.1403 24 1 -0.3633 -1.0255 0.0680 25 1 -0.3634 0.4538 -0.9220 26 1 -0.3633 0.5716 0.8541 27 1 1.6936 1.8774 -0.9172 28 1 1.6013 1.9128 0.8603 29 1 3.8254 0.8479 1.0105 30 1 3.9181 2.3448 0.0515 31 1 5.2838 -0.3505 0.8548 32 1 6.1758 -1.3319 -0.3330 33 1 7.4521 -0.0864 1.6227 34 1 7.2892 1.3197 0.5624 35 1 8.5722 -1.2890 -0.1744 36 1 9.4187 0.1972 0.3130 37 1 9.4175 0.1683 -2.1116 38 1 8.2111 1.3812 -1.6208 39 1 5.7932 -1.3968 -5.5305 40 1 5.4025 -0.7815 -2.7389 41 1 5.9553 0.8529 -3.1517 42 1 3.8253 -1.3114 -0.1427 43 1 3.9177 -1.3468 -1.9203 44 1 1.6013 -1.7788 -1.1112 45 1 1.6933 -0.2821 -2.0705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174876997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:02 Heat of formation + Delta-G solvation = 20.009384 kcal Electronic energy + Delta-G solvation = -22444.402019 eV Core-core repulsion = 19496.691857 eV Total energy + Delta-G solvation = -2947.710162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.93872 -38.97408 -36.45367 -35.23921 -32.63533 -32.10710 -31.72194 -28.59303 -27.75641 -25.81905 -25.10253 -24.58256 -23.73395 -21.46272 -21.04883 -19.92302 -18.52869 -17.31863 -17.01040 -16.20657 -16.08686 -15.95324 -15.91141 -15.69816 -15.28726 -14.89626 -14.47277 -14.16137 -14.04907 -13.69202 -13.43145 -13.19462 -13.02787 -12.95072 -12.77240 -12.61449 -12.43059 -12.22696 -12.14010 -12.03601 -11.85750 -11.57862 -11.46023 -11.42961 -11.18504 -11.09689 -10.41763 -9.37708 -9.07303 -8.59925 -7.82050 -5.30660 1.43642 1.46186 1.55920 2.50973 2.91424 2.99978 3.32358 3.79770 3.86471 3.92067 4.11778 4.13078 4.19701 4.26555 4.34582 4.44044 4.51544 4.51812 4.56790 4.62775 4.67351 4.73243 4.84221 4.88279 4.93562 4.94228 5.00775 5.01249 5.09640 5.18438 5.25867 5.30000 5.31770 5.46600 5.54017 5.63482 5.71510 5.81050 5.99498 6.06629 6.24755 6.34051 6.45603 7.22061 7.98963 8.38162 9.21735 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.006969 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.071970 B = 4016.565996 C = 5100.531548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.062 3.938 4 C 0.058 3.942 5 N -0.543 5.543 6 C 0.079 3.921 7 H 0.070 0.930 8 C -0.122 4.122 9 C -0.097 4.097 10 C -0.132 4.132 11 C 0.150 3.850 12 N -0.603 5.603 13 C -0.262 4.262 14 H 0.061 0.939 15 C -0.044 4.044 16 N -0.929 5.929 17 Si 0.956 3.044 18 H -0.268 1.268 19 H -0.291 1.291 20 H -0.292 1.292 21 C 0.207 3.793 22 C 0.063 3.937 23 C 0.066 3.934 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.247 0.753 40 H 0.049 0.951 41 H -0.015 1.015 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 4.326 12.596 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.066 4.066 4 C -0.070 4.070 5 N -0.268 5.268 6 C -0.031 4.031 7 H 0.088 0.912 8 C -0.161 4.161 9 C -0.135 4.135 10 C -0.172 4.172 11 C 0.023 3.977 12 N -0.325 5.325 13 C -0.393 4.393 14 H 0.079 0.921 15 C -0.240 4.240 16 N -0.575 5.575 17 Si 0.785 3.215 18 H -0.193 1.193 19 H -0.218 1.218 20 H -0.219 1.219 21 C 0.082 3.918 22 C -0.065 4.065 23 C -0.063 4.063 24 H 0.092 0.908 25 H 0.042 0.958 26 H 0.102 0.898 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.003 0.997 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.105 4.344 12.456 15.483 hybrid contribution 0.159 -1.000 -1.080 1.481 sum -7.946 3.345 11.376 14.273 Atomic orbital electron populations 1.22400 0.85785 1.02914 1.01039 1.62211 1.09124 1.14180 1.42285 1.22187 0.93971 0.89156 1.01330 1.22206 0.94769 0.98422 0.91641 1.62201 1.07356 1.13976 1.43233 1.22008 0.86281 0.98580 0.96181 0.91178 1.21512 0.97453 0.99765 0.97352 1.20259 0.93888 1.00394 0.98979 1.21322 0.98169 1.00338 0.97407 1.20893 0.91312 0.93964 0.91513 1.43792 1.03977 1.26158 1.58595 1.19447 1.15641 0.99197 1.05017 0.92097 1.25734 1.00700 1.01161 0.96386 1.70248 1.33010 1.34163 1.20093 0.85371 0.77237 0.81171 0.77702 1.19275 1.21768 1.21933 1.20585 0.84030 0.96368 0.90828 1.22004 0.94564 0.89995 0.99968 1.22068 0.93719 0.98811 0.91667 0.90776 0.95774 0.89777 0.94964 0.88071 0.94043 0.89664 0.92104 0.93979 0.91858 0.92171 0.94211 0.90625 0.94626 0.94310 0.94363 0.93310 0.99689 0.94324 0.92842 0.89595 0.95311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.60 127.69 1.23 1.72 16 2 N -0.55 -13.87 4.97 -921.91 -4.58 -18.45 16 3 C 0.06 1.47 5.62 86.31 0.49 1.95 16 4 C 0.06 1.57 5.35 86.31 0.46 2.03 16 5 N -0.54 -19.07 4.64 -872.61 -4.05 -23.11 16 6 C 0.08 3.03 2.01 44.55 0.09 3.12 16 7 H 0.07 2.59 7.13 -2.38 -0.02 2.58 16 8 C -0.12 -4.29 3.62 29.81 0.11 -4.19 16 9 C -0.10 -3.01 5.17 28.67 0.15 -2.86 16 10 C -0.13 -4.54 5.74 29.39 0.17 -4.37 16 11 C 0.15 6.27 5.65 87.37 0.49 6.77 16 12 N -0.60 -30.43 2.26 -698.37 -1.58 -32.01 16 13 C -0.26 -14.56 9.42 84.03 0.79 -13.77 16 14 H 0.06 3.34 7.87 -2.91 -0.02 3.32 16 15 C -0.04 -2.49 4.87 84.86 0.41 -2.08 16 16 N -0.93 -55.83 11.11 21.65 0.24 -55.59 16 17 Si 0.96 45.63 29.58 68.60 2.03 47.66 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 21 C 0.21 10.27 4.21 86.49 0.36 10.64 16 22 C 0.06 2.22 4.93 86.31 0.43 2.65 16 23 C 0.07 1.93 5.62 86.31 0.49 2.42 16 24 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.08 1.28 8.13 -2.39 -0.02 1.26 16 27 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 1.86 8.13 -2.39 -0.02 1.85 16 29 H 0.04 1.13 6.62 -2.39 -0.02 1.12 16 30 H 0.09 2.13 8.04 -2.38 -0.02 2.11 16 31 H 0.06 1.96 5.52 -2.39 -0.01 1.95 16 32 H 0.04 1.77 7.48 -2.39 -0.02 1.76 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.72 7.34 -2.39 -0.02 1.70 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.04 1.52 7.99 -2.38 -0.02 1.50 16 38 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 39 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.05 2.71 4.35 -2.38 -0.01 2.70 16 41 H -0.01 -0.85 8.02 -2.39 -0.02 -0.87 16 42 H 0.04 1.36 6.57 -2.39 -0.02 1.35 16 43 H 0.05 2.27 6.21 -2.39 -0.01 2.26 16 44 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -63.25 326.61 -1.34 -64.59 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.93 Total: 12.87 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.66 Total: 4.04 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -9.97 Total: -129.16 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -63.25 -1.34 -64.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174876997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.599 kcal (2) G-P(sol) polarization free energy of solvation -63.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds