Wall clock time and date at job start Mon Mar 30 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46963 * 110.99875 * 2 1 4 4 C 1.53054 * 109.36199 * 183.19023 * 3 2 1 5 5 N 1.46963 * 109.36273 * 301.59513 * 4 3 2 6 6 C 1.46901 * 110.99741 * 183.19366 * 5 4 3 7 7 C 1.52997 * 109.47066 * 170.00510 * 6 5 4 8 8 N 1.46901 * 109.47066 * 179.97438 * 7 6 5 9 9 C 1.46902 * 110.99715 * 189.99874 * 8 7 6 10 10 C 1.50703 * 109.47043 * 162.29397 * 9 8 7 11 11 H 1.08001 * 120.00257 * 354.72186 * 10 9 8 12 12 C 1.37879 * 120.00095 * 174.72311 * 10 9 8 13 13 N 1.31516 * 119.99554 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47466 * 60.00036 * 14 12 10 16 16 H 1.48500 * 109.47009 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47077 * 299.99486 * 14 12 10 18 18 C 1.46891 * 111.00370 * 66.04094 * 8 7 6 19 19 C 1.52999 * 117.50043 * 265.99356 * 18 8 7 20 20 C 1.52997 * 117.50065 * 197.36827 * 18 8 7 21 21 C 1.46953 * 110.87989 * 59.32541 * 5 4 3 22 22 C 1.46962 * 111.00234 * 123.79954 * 2 1 3 23 23 H 1.08992 * 109.47266 * 59.99859 * 1 2 3 24 24 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47026 * 299.99695 * 1 2 3 26 26 H 1.08999 * 109.48873 * 63.22611 * 3 2 1 27 27 H 1.08991 * 109.50384 * 303.16541 * 3 2 1 28 28 H 1.09001 * 109.48396 * 181.63535 * 4 3 2 29 29 H 1.08989 * 109.49452 * 61.56495 * 4 3 2 30 30 H 1.09000 * 109.47507 * 49.99882 * 6 5 4 31 31 H 1.09010 * 109.46803 * 290.00059 * 6 5 4 32 32 H 1.09000 * 109.47470 * 59.99350 * 7 6 5 33 33 H 1.09001 * 109.46997 * 299.99210 * 7 6 5 34 34 H 1.08996 * 109.47752 * 42.29405 * 9 8 7 35 35 H 1.08996 * 109.47136 * 282.29110 * 9 8 7 36 36 H 0.97007 * 119.99458 * 179.97438 * 13 12 10 37 37 H 1.09007 * 115.54743 * 51.70284 * 18 8 7 38 38 H 1.08997 * 117.49746 * 0.02562 * 19 18 8 39 39 H 1.09002 * 117.49561 * 145.01935 * 19 18 8 40 40 H 1.08998 * 117.49869 * 214.97604 * 20 18 8 41 41 H 1.08999 * 117.49801 * 0.02562 * 20 18 8 42 42 H 1.09004 * 109.48822 * 60.64644 * 21 5 4 43 43 H 1.08997 * 109.49209 * 180.71018 * 21 5 4 44 44 H 1.09004 * 109.48695 * 296.77857 * 22 2 1 45 45 H 1.08999 * 109.48904 * 56.82121 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0598 6 6 5.5191 0.5660 1.0598 7 6 6.0291 -0.0161 2.3796 8 7 7.4981 -0.0166 2.3793 9 6 8.0244 -0.7796 3.5190 10 6 9.4679 -1.1303 3.2651 11 1 9.9222 -0.8928 2.3145 12 6 10.2087 -1.7543 4.2464 13 7 9.6556 -2.0430 5.4041 14 14 11.9981 -2.1883 3.9318 15 1 12.7634 -0.9502 3.6374 16 1 12.5667 -2.8466 5.1354 17 1 12.0870 -3.1126 2.7730 18 6 8.0251 1.3545 2.3753 19 6 8.3668 1.9761 1.0197 20 6 9.4874 1.5482 1.9694 21 6 3.5235 -0.8060 1.0598 22 6 1.9957 -0.7632 1.1401 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6938 1.8774 0.9174 27 1 1.6013 1.9132 -0.8600 28 1 3.9177 2.3449 -0.0512 29 1 3.8254 0.8480 -1.0105 30 1 5.8824 1.5877 0.9488 31 1 5.8824 -0.0410 0.2305 32 1 5.6658 -1.0378 2.4906 33 1 5.6658 0.5908 3.2089 34 1 7.4447 -1.6943 3.6428 35 1 7.9507 -0.1774 4.4245 36 1 10.1767 -2.4824 6.0944 37 1 7.6249 2.0142 3.1454 38 1 8.2002 1.3677 0.1308 39 1 8.1913 3.0449 0.8976 40 1 10.0492 2.3355 2.4720 41 1 10.0584 0.6582 1.7049 42 1 3.8254 -1.3114 0.1425 43 1 3.9178 -1.3469 1.9200 44 1 1.6938 -0.2820 2.0704 45 1 1.6011 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214005174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:54 Heat of formation + Delta-G solvation = 49.966474 kcal Electronic energy + Delta-G solvation = -21084.242928 eV Core-core repulsion = 18137.831803 eV Total energy + Delta-G solvation = -2946.411125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.36426 -37.74233 -35.56232 -33.53102 -32.38611 -31.00324 -29.74591 -27.44996 -25.54783 -23.91688 -23.39529 -22.18390 -21.59853 -21.25159 -19.76572 -19.33284 -16.48612 -16.26656 -15.39833 -15.09365 -14.96992 -14.95681 -14.66671 -14.49155 -14.22675 -13.97717 -13.14936 -12.69882 -12.62420 -12.58495 -12.25160 -12.06806 -11.77509 -11.51116 -11.30761 -11.17779 -11.05290 -10.88968 -10.83631 -10.65961 -10.62585 -10.29959 -9.90219 -9.48344 -9.09482 -9.08335 -8.54929 -8.36992 -8.19665 -7.26656 -5.97829 -3.97804 3.35411 3.39530 3.41988 3.77025 3.92492 4.45865 4.59563 4.78739 4.88334 4.93600 5.02388 5.19402 5.23178 5.37201 5.38984 5.40525 5.44319 5.56322 5.62821 5.65278 5.68314 5.73261 5.76949 5.85245 5.92955 5.99324 6.10372 6.13723 6.18614 6.33995 6.47516 6.50194 6.71357 6.82195 6.84417 6.99281 7.15002 7.20729 7.30469 7.42914 7.89305 8.15320 8.24290 8.58964 9.08675 9.64997 11.12957 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003911 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.498946 B = 7157.232188 C = 7806.470229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.058 3.942 4 C 0.059 3.941 5 N -0.542 5.542 6 C 0.064 3.936 7 C 0.065 3.935 8 N -0.512 5.512 9 C 0.198 3.802 10 C -0.499 4.499 11 H 0.067 0.933 12 C 0.053 3.947 13 N -0.901 5.901 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.029 3.971 19 C -0.188 4.188 20 C -0.153 4.153 21 C 0.054 3.946 22 C 0.057 3.943 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.029 0.971 34 H 0.024 0.976 35 H -0.003 1.003 36 H 0.260 0.740 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.602 6.679 -9.981 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.070 4.070 4 C -0.070 4.070 5 N -0.268 5.268 6 C -0.064 4.064 7 C -0.063 4.063 8 N -0.237 5.237 9 C 0.073 3.927 10 C -0.537 4.537 11 H 0.085 0.915 12 C -0.147 4.147 13 N -0.541 5.541 14 Si 0.722 3.278 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.081 4.081 19 C -0.226 4.226 20 C -0.190 4.190 21 C -0.074 4.074 22 C -0.071 4.071 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.015 0.985 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.401 6.349 -10.217 18.764 hybrid contribution 0.648 0.101 0.799 1.034 sum -13.753 6.450 -9.418 17.873 Atomic orbital electron populations 1.22334 0.87429 1.01985 1.00508 1.62165 1.07617 1.14118 1.43293 1.22165 0.94921 0.89183 1.00762 1.22103 0.93865 0.98628 0.92390 1.62116 1.08776 1.13680 1.42193 1.22109 0.84752 1.01470 0.98071 1.21934 0.89303 0.99895 0.95214 1.61865 1.04304 1.10374 1.47179 1.19685 0.95473 0.91813 0.85739 1.21216 0.95256 1.37278 0.99971 0.91465 1.24983 0.98425 0.96207 0.95109 1.69954 1.36693 1.42527 1.04956 0.86616 0.85028 0.78655 0.77454 1.20247 1.21473 1.20254 1.22044 0.98993 0.91180 0.95837 1.23033 1.05863 0.98991 0.94694 1.23045 0.91453 1.02809 1.01652 1.22206 0.93595 0.90010 1.01634 1.22196 0.95080 0.98170 0.91655 0.91510 0.91432 0.95687 0.94059 0.90583 0.90410 0.94134 0.90562 0.94253 0.91548 0.95284 0.95772 0.98528 0.92999 0.91394 0.89141 0.90278 0.90162 0.86887 0.93980 0.89656 0.93999 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.06 0.58 0.80 16 2 N -0.55 -5.98 4.97 -242.75 -1.21 -7.19 16 3 C 0.06 0.61 5.62 -3.76 -0.02 0.59 16 4 C 0.06 0.69 5.61 -3.76 -0.02 0.67 16 5 N -0.54 -7.49 4.71 -234.46 -1.10 -8.60 16 6 C 0.06 0.98 4.71 -3.82 -0.02 0.97 16 7 C 0.07 1.20 4.88 -3.82 -0.02 1.18 16 8 N -0.51 -11.00 4.58 -228.09 -1.04 -12.04 16 9 C 0.20 5.14 4.75 -4.97 -0.02 5.12 16 10 C -0.50 -13.77 8.04 -34.44 -0.28 -14.05 16 11 H 0.07 1.82 5.49 -52.49 -0.29 1.53 16 12 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 13 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 14 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 C 0.03 0.57 4.27 -67.72 -0.29 0.28 16 19 C -0.19 -3.08 8.92 -26.73 -0.24 -3.32 16 20 C -0.15 -2.91 9.39 -26.73 -0.25 -3.16 16 21 C 0.05 0.71 5.41 -3.77 -0.02 0.69 16 22 C 0.06 0.65 5.62 -3.76 -0.02 0.63 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 0.50 8.14 -51.94 -0.42 0.08 16 30 H 0.08 1.17 6.27 -51.93 -0.33 0.84 16 31 H 0.04 0.64 8.12 -51.92 -0.42 0.22 16 32 H 0.07 1.24 6.20 -51.93 -0.32 0.92 16 33 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.02 0.67 7.77 -51.93 -0.40 0.26 16 35 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.11 2.41 5.63 -51.93 -0.29 2.12 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.16 6.34 -51.93 -0.33 0.84 16 44 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -29.42 344.85 -11.43 -40.85 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.27 Total: -0.51 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.72 Total: -8.21 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -2.62 Total: -53.91 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.42 -11.43 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214005174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.815 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds