Wall clock time and date at job start Mon Mar 30 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46963 * 110.99875 * 2 1 4 4 C 1.53054 * 109.36199 * 183.19023 * 3 2 1 5 5 N 1.46963 * 109.36273 * 301.59513 * 4 3 2 6 6 C 1.46901 * 110.99741 * 183.19366 * 5 4 3 7 7 C 1.52997 * 109.47066 * 170.00510 * 6 5 4 8 8 N 1.46901 * 109.47066 * 179.97438 * 7 6 5 9 9 C 1.46902 * 110.99715 * 189.99874 * 8 7 6 10 10 C 1.50703 * 109.47043 * 162.29397 * 9 8 7 11 11 H 1.08001 * 120.00257 * 354.72186 * 10 9 8 12 12 C 1.37879 * 120.00095 * 174.72311 * 10 9 8 13 13 N 1.31516 * 119.99554 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99865 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47466 * 60.00036 * 14 12 10 16 16 H 1.48500 * 109.47009 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47077 * 299.99486 * 14 12 10 18 18 C 1.46891 * 111.00370 * 66.04094 * 8 7 6 19 19 C 1.52999 * 117.50043 * 265.99356 * 18 8 7 20 20 C 1.52997 * 117.50065 * 197.36827 * 18 8 7 21 21 C 1.46953 * 110.87989 * 59.32541 * 5 4 3 22 22 C 1.46962 * 111.00234 * 123.79954 * 2 1 3 23 23 H 1.08992 * 109.47266 * 59.99859 * 1 2 3 24 24 H 1.09005 * 109.46808 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47026 * 299.99695 * 1 2 3 26 26 H 1.08999 * 109.48873 * 63.22611 * 3 2 1 27 27 H 1.08991 * 109.50384 * 303.16541 * 3 2 1 28 28 H 1.09001 * 109.48396 * 181.63535 * 4 3 2 29 29 H 1.08989 * 109.49452 * 61.56495 * 4 3 2 30 30 H 1.09000 * 109.47507 * 49.99882 * 6 5 4 31 31 H 1.09010 * 109.46803 * 290.00059 * 6 5 4 32 32 H 1.09000 * 109.47470 * 59.99350 * 7 6 5 33 33 H 1.09001 * 109.46997 * 299.99210 * 7 6 5 34 34 H 1.08996 * 109.47752 * 42.29405 * 9 8 7 35 35 H 1.08996 * 109.47136 * 282.29110 * 9 8 7 36 36 H 0.97007 * 119.99458 * 179.97438 * 13 12 10 37 37 H 1.09007 * 115.54743 * 51.70284 * 18 8 7 38 38 H 1.08997 * 117.49746 * 0.02562 * 19 18 8 39 39 H 1.09002 * 117.49561 * 145.01935 * 19 18 8 40 40 H 1.08998 * 117.49869 * 214.97604 * 20 18 8 41 41 H 1.08999 * 117.49801 * 0.02562 * 20 18 8 42 42 H 1.09004 * 109.48822 * 60.64644 * 21 5 4 43 43 H 1.08997 * 109.49209 * 180.71018 * 21 5 4 44 44 H 1.09004 * 109.48695 * 296.77857 * 22 2 1 45 45 H 1.08999 * 109.48904 * 56.82121 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0598 6 6 5.5191 0.5660 1.0598 7 6 6.0291 -0.0161 2.3796 8 7 7.4981 -0.0166 2.3793 9 6 8.0244 -0.7796 3.5190 10 6 9.4679 -1.1303 3.2651 11 1 9.9222 -0.8928 2.3145 12 6 10.2087 -1.7543 4.2464 13 7 9.6556 -2.0430 5.4041 14 14 11.9981 -2.1883 3.9318 15 1 12.7634 -0.9502 3.6374 16 1 12.5667 -2.8466 5.1354 17 1 12.0870 -3.1126 2.7730 18 6 8.0251 1.3545 2.3753 19 6 8.3668 1.9761 1.0197 20 6 9.4874 1.5482 1.9694 21 6 3.5235 -0.8060 1.0598 22 6 1.9957 -0.7632 1.1401 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6938 1.8774 0.9174 27 1 1.6013 1.9132 -0.8600 28 1 3.9177 2.3449 -0.0512 29 1 3.8254 0.8480 -1.0105 30 1 5.8824 1.5877 0.9488 31 1 5.8824 -0.0410 0.2305 32 1 5.6658 -1.0378 2.4906 33 1 5.6658 0.5908 3.2089 34 1 7.4447 -1.6943 3.6428 35 1 7.9507 -0.1774 4.4245 36 1 10.1767 -2.4824 6.0944 37 1 7.6249 2.0142 3.1454 38 1 8.2002 1.3677 0.1308 39 1 8.1913 3.0449 0.8976 40 1 10.0492 2.3355 2.4720 41 1 10.0584 0.6582 1.7049 42 1 3.8254 -1.3114 0.1425 43 1 3.9178 -1.3469 1.9200 44 1 1.6938 -0.2820 2.0704 45 1 1.6011 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214005174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:53 Heat of formation + Delta-G solvation = 28.948118 kcal Electronic energy + Delta-G solvation = -21085.154353 eV Core-core repulsion = 18137.831803 eV Total energy + Delta-G solvation = -2947.322549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40359 -39.25160 -36.63110 -35.31621 -34.25510 -31.95284 -31.12522 -28.95823 -27.03875 -24.92748 -24.43396 -24.05364 -23.04322 -22.59071 -20.97068 -20.72882 -18.54034 -17.32281 -16.71604 -16.60221 -16.40989 -16.03801 -15.87533 -15.71331 -15.47133 -15.21881 -14.54977 -14.42387 -14.04750 -13.82430 -13.43248 -13.41032 -13.10222 -12.84813 -12.74033 -12.58528 -12.45797 -12.28876 -12.24847 -12.15230 -11.88385 -11.70417 -11.52114 -11.19462 -10.96636 -10.66661 -10.52262 -9.43557 -9.25791 -9.05872 -8.15236 -6.23263 1.42116 1.45059 1.52356 2.41654 2.74806 2.98409 3.08273 3.17230 3.40696 3.89333 3.91963 4.08580 4.18093 4.21151 4.24879 4.30035 4.36294 4.46055 4.51115 4.60506 4.62478 4.64659 4.68614 4.81707 4.83891 4.89935 4.90529 4.94968 5.00540 5.02195 5.04764 5.09680 5.13591 5.20242 5.37181 5.47980 5.78142 5.93198 5.97005 6.09826 6.16060 6.17372 6.41124 6.65340 6.92186 7.44831 8.95766 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.030345 B = 0.003911 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.498946 B = 7157.232188 C = 7806.470229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.559 5.559 3 C 0.061 3.939 4 C 0.058 3.942 5 N -0.549 5.549 6 C 0.083 3.917 7 C 0.070 3.930 8 N -0.514 5.514 9 C 0.212 3.788 10 C -0.507 4.507 11 H 0.072 0.928 12 C -0.001 4.001 13 N -0.940 5.940 14 Si 0.964 3.036 15 H -0.265 1.265 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.001 3.999 19 C -0.143 4.143 20 C -0.167 4.167 21 C 0.054 3.946 22 C 0.063 3.937 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.036 0.964 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.084 0.916 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.019 0.981 34 H -0.003 1.003 35 H -0.038 1.038 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.828 7.967 -12.019 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.284 5.284 3 C -0.067 4.067 4 C -0.070 4.070 5 N -0.275 5.275 6 C -0.045 4.045 7 C -0.059 4.059 8 N -0.239 5.239 9 C 0.086 3.914 10 C -0.545 4.545 11 H 0.090 0.910 12 C -0.198 4.198 13 N -0.581 5.581 14 Si 0.789 3.211 15 H -0.190 1.190 16 H -0.213 1.213 17 H -0.194 1.194 18 C -0.109 4.109 19 C -0.180 4.180 20 C -0.204 4.204 21 C -0.074 4.074 22 C -0.065 4.065 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.116 0.884 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.015 0.985 35 H -0.020 1.020 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.649 7.656 -12.284 20.594 hybrid contribution 0.640 -0.280 1.428 1.590 sum -14.009 7.376 -10.856 19.197 Atomic orbital electron populations 1.22388 0.85800 1.02745 1.01216 1.62194 1.09152 1.14277 1.42747 1.22181 0.93890 0.89199 1.01459 1.22197 0.94884 0.98733 0.91156 1.62109 1.07520 1.14232 1.43624 1.21824 0.86033 1.01224 0.95457 1.21926 0.87594 0.99450 0.96902 1.61805 1.06007 1.11625 1.44437 1.19336 0.95105 0.90788 0.86135 1.21527 0.95931 1.36904 1.00162 0.90966 1.25891 1.03123 0.96050 0.94779 1.70100 1.38531 1.43480 1.05989 0.85512 0.79402 0.78773 0.77427 1.19014 1.21271 1.19403 1.22157 0.99809 0.90214 0.98671 1.23068 1.01602 1.00722 0.92620 1.23016 0.91302 1.02585 1.03476 1.22184 0.95038 0.89568 1.00620 1.22117 0.93613 0.99054 0.91756 0.90152 0.90742 0.95546 0.94579 0.88437 0.89169 0.94467 0.89758 0.95009 0.92637 0.96282 0.98532 1.01977 0.92964 0.91704 0.88763 0.86720 0.88806 0.89366 0.94671 0.91042 0.94669 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.60 127.69 1.23 1.61 16 2 N -0.56 -11.15 4.97 -921.92 -4.58 -15.73 16 3 C 0.06 1.14 5.62 86.31 0.49 1.62 16 4 C 0.06 1.26 5.61 86.31 0.48 1.74 16 5 N -0.55 -14.75 4.71 -895.70 -4.22 -18.96 16 6 C 0.08 2.50 4.71 86.30 0.41 2.91 16 7 C 0.07 2.64 4.88 86.30 0.42 3.06 16 8 N -0.51 -22.59 4.58 -875.54 -4.01 -26.60 16 9 C 0.21 11.58 4.75 85.56 0.41 11.98 16 10 C -0.51 -28.64 8.04 25.60 0.21 -28.43 16 11 H 0.07 3.95 5.49 -2.91 -0.02 3.93 16 12 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 13 N -0.94 -57.49 13.29 21.45 0.28 -57.21 16 14 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.00 0.02 4.27 44.92 0.19 0.21 16 19 C -0.14 -4.28 8.92 30.59 0.27 -4.01 16 20 C -0.17 -6.17 9.39 30.59 0.29 -5.88 16 21 C 0.05 1.42 5.41 86.31 0.47 1.89 16 22 C 0.06 1.37 5.62 86.31 0.49 1.86 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 0.99 8.13 -2.38 -0.02 0.97 16 25 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.72 8.07 -2.39 -0.02 1.70 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 2.41 6.27 -2.39 -0.01 2.40 16 31 H 0.03 1.01 8.12 -2.38 -0.02 0.99 16 32 H 0.06 2.19 6.20 -2.39 -0.01 2.17 16 33 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 34 H 0.00 -0.20 7.77 -2.39 -0.02 -0.22 16 35 H -0.04 -2.26 8.03 -2.39 -0.02 -2.28 16 36 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 37 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.09 3.73 5.63 -2.39 -0.01 3.72 16 42 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.07 2.03 6.34 -2.39 -0.02 2.02 16 44 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.09 1.71 8.13 -2.39 -0.02 1.70 16 Total: -1.00 -64.55 344.85 -3.76 -68.31 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.93 Total: 14.62 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 5.80 Total: -11.05 kcal Atomic # 7 Polarization: -105.98 SS G_CDS: -12.52 Total: -118.50 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -64.55 -3.76 -68.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214005174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.259 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds