Wall clock time and date at job start Mon Mar 30 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47262 * 2 1 4 4 C 1.50694 * 109.46938 * 120.00339 * 2 1 3 5 5 H 1.08005 * 120.00049 * 119.99855 * 4 2 1 6 6 C 1.37877 * 120.00250 * 299.99772 * 4 2 1 7 7 N 1.31514 * 119.99649 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00130 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46989 * 59.99997 * 8 6 4 10 10 H 1.48500 * 109.46890 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46963 * 299.99831 * 8 6 4 12 12 N 1.46900 * 109.46932 * 240.00137 * 2 1 3 13 13 C 1.47907 * 111.00114 * 59.63897 * 12 2 1 14 14 C 1.53989 * 107.05961 * 145.84320 * 13 12 2 15 15 C 1.54593 * 105.14032 * 358.77162 * 14 13 12 16 16 H 1.09004 * 110.87594 * 96.47742 * 15 14 13 17 17 N 1.46908 * 110.72142 * 219.68846 * 15 14 13 18 18 C 1.46840 * 110.99805 * 164.29555 * 17 15 14 19 19 C 1.53039 * 109.52275 * 185.83851 * 18 17 15 20 20 C 1.53118 * 109.27749 * 300.81349 * 19 18 17 21 21 N 1.46897 * 109.52600 * 177.55894 * 20 19 18 22 22 C 1.53121 * 109.15741 * 57.65750 * 20 19 18 23 23 C 1.46851 * 110.99788 * 288.49901 * 17 15 14 24 24 C 1.48537 * 110.99884 * 177.02966 * 12 2 1 25 25 H 1.08995 * 109.47104 * 305.57851 * 1 2 3 26 26 H 1.09006 * 109.47178 * 65.57907 * 1 2 3 27 27 H 1.08996 * 109.47277 * 185.57412 * 1 2 3 28 28 H 0.97005 * 119.99310 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.91882 * 26.48330 * 13 12 2 30 30 H 1.09006 * 110.07594 * 265.28837 * 13 12 2 31 31 H 1.09001 * 110.30508 * 239.85364 * 14 13 12 32 32 H 1.09005 * 110.31076 * 117.69261 * 14 13 12 33 33 H 1.09005 * 109.46332 * 305.85060 * 18 17 15 34 34 H 1.08999 * 109.46872 * 65.82183 * 18 17 15 35 35 H 1.08999 * 109.50331 * 180.87662 * 19 18 17 36 36 H 1.09000 * 109.53679 * 60.78073 * 19 18 17 37 37 H 1.08995 * 109.57916 * 297.72248 * 20 19 18 38 38 H 1.00899 * 110.99924 * 60.31354 * 21 20 19 39 39 H 1.00897 * 111.00655 * 184.27558 * 21 20 19 40 40 H 1.09005 * 109.50484 * 182.40456 * 22 20 19 41 41 H 1.08999 * 109.53703 * 62.30307 * 22 20 19 42 42 H 1.08997 * 109.46708 * 294.18205 * 23 17 15 43 43 H 1.09002 * 109.46315 * 54.15793 * 23 17 15 44 44 H 1.08997 * 110.67043 * 81.84419 * 24 12 2 45 45 H 1.08999 * 110.66978 * 318.71300 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3224 -1.1198 4.0079 9 1 3.8074 -1.1192 4.0076 10 1 1.8268 -0.4202 5.2204 11 1 1.8279 -2.5200 4.0080 12 7 2.0196 -0.6925 -1.1995 13 6 1.5383 -0.0268 -2.4294 14 6 2.6508 -0.1684 -3.4847 15 6 3.7940 -0.9224 -2.7675 16 1 3.7491 -1.9903 -2.9814 17 7 5.1008 -0.3718 -3.1512 18 6 6.1498 -0.8095 -2.2215 19 6 7.4638 -0.1039 -2.5641 20 6 7.8587 -0.4421 -4.0043 21 7 9.0886 0.2788 -4.3584 22 6 6.7287 -0.0201 -4.9475 23 6 5.4360 -0.7282 -4.5358 24 6 3.5027 -0.6504 -1.2703 25 1 -0.3633 0.5979 0.8358 26 1 -0.3634 0.4249 -0.9358 27 1 -0.3633 -1.0228 0.0998 28 1 0.7088 1.1611 3.4845 29 1 1.3471 1.0277 -2.2305 30 1 0.6269 -0.5088 -2.7836 31 1 2.9913 0.8147 -3.8095 32 1 2.2927 -0.7462 -4.3368 33 1 5.8584 -0.5593 -1.2013 34 1 6.2837 -1.8879 -2.3066 35 1 8.2459 -0.4407 -1.8837 36 1 7.3352 0.9740 -2.4656 37 1 8.0268 -1.5153 -4.0945 38 1 9.8493 0.0170 -3.7493 39 1 9.3313 0.1267 -5.3259 40 1 6.9856 -0.2971 -5.9700 41 1 6.5876 1.0590 -4.8874 42 1 5.5732 -1.8069 -4.6102 43 1 4.6263 -0.4188 -5.1967 44 1 3.9400 -1.4292 -0.6456 45 1 3.8741 0.3320 -0.9785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226837987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:43 Heat of formation + Delta-G solvation = -15.790256 kcal Electronic energy + Delta-G solvation = -21547.797319 eV Core-core repulsion = 18598.534769 eV Total energy + Delta-G solvation = -2949.262551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77538 -39.11080 -36.33802 -34.96988 -32.78850 -31.98593 -30.68130 -29.86091 -27.90930 -26.97169 -24.48652 -23.76771 -22.94025 -21.30875 -20.70519 -20.55050 -18.48440 -17.53413 -16.94851 -16.46230 -16.44945 -16.04489 -15.79813 -15.36093 -15.28008 -14.81264 -14.42760 -14.14478 -13.98687 -13.74670 -13.49339 -13.21218 -13.08233 -12.83495 -12.64107 -12.49453 -12.35800 -12.15159 -12.14400 -12.01612 -11.84949 -11.76180 -11.54509 -11.44545 -11.13718 -10.91762 -10.53762 -9.60003 -9.26140 -9.05861 -8.12366 -6.24139 1.40742 1.42823 1.50463 2.41313 2.78762 3.16318 3.50851 3.58790 3.63912 3.85709 3.88602 3.92642 4.21101 4.27191 4.31900 4.39784 4.43475 4.56737 4.63547 4.69473 4.78602 4.84630 4.85650 4.88766 4.93110 4.96295 4.98953 5.02237 5.08038 5.14883 5.19928 5.23465 5.25537 5.42342 5.45147 5.70669 5.71787 6.10222 6.19934 6.24762 6.27526 6.34608 6.63662 6.64799 6.88674 7.44955 8.94137 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.022669 B = 0.004821 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.867235 B = 5806.872266 C = 6754.642790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.211 3.789 3 H -0.039 1.039 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.271 1.271 12 N -0.522 5.522 13 C 0.035 3.965 14 C -0.106 4.106 15 C 0.090 3.910 16 H 0.055 0.945 17 N -0.537 5.537 18 C 0.054 3.946 19 C -0.103 4.103 20 C 0.094 3.906 21 N -0.852 5.852 22 C -0.103 4.103 23 C 0.058 3.942 24 C 0.067 3.933 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.036 0.964 38 H 0.347 0.653 39 H 0.350 0.650 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.397 -3.765 -15.875 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.104 3.896 3 H -0.021 1.021 4 C -0.558 4.558 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.247 5.247 13 C -0.093 4.093 14 C -0.144 4.144 15 C -0.019 4.019 16 H 0.073 0.927 17 N -0.263 5.263 18 C -0.074 4.074 19 C -0.141 4.141 20 C -0.017 4.017 21 N -0.384 5.384 22 C -0.141 4.141 23 C -0.070 4.070 24 C -0.061 4.061 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 11.675 -3.014 -15.494 19.633 hybrid contribution 0.674 -1.061 1.111 1.678 sum 12.348 -4.076 -14.383 19.390 Atomic orbital electron populations 1.21605 0.97118 0.99614 0.99203 1.19196 0.92803 0.89947 0.87672 1.02122 1.21311 1.31260 1.12201 0.91032 0.92819 1.25717 0.95318 0.95733 1.01899 1.70029 1.37723 1.24157 1.24128 0.85588 0.78693 0.78738 0.78485 1.19727 1.20772 1.19609 1.64759 1.06543 1.51144 1.02223 1.22833 0.99044 0.96450 0.90994 1.22354 0.93402 1.01207 0.97446 1.22435 0.89085 0.96600 0.93820 0.92746 1.62001 1.01216 1.59973 1.03115 1.22070 0.91679 0.97193 0.96469 1.21530 0.95336 1.00943 0.96311 1.21294 0.90805 0.94841 0.94754 1.58648 1.06221 1.64379 1.09133 1.21559 0.92765 1.01056 0.98755 1.22121 0.98327 0.97747 0.88827 1.22864 0.89249 0.98705 0.95318 0.92440 0.94997 0.95093 0.92905 0.95880 0.90408 0.90561 0.89211 0.91964 0.94673 0.90948 0.92055 0.94617 0.83930 0.83666 0.89863 0.91726 0.94627 0.89689 0.92274 0.95967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.88 71.98 0.64 -5.33 16 2 C 0.21 11.25 1.74 44.17 0.08 11.32 16 3 H -0.04 -2.32 8.00 -2.39 -0.02 -2.33 16 4 C -0.52 -29.60 8.14 25.60 0.21 -29.39 16 5 H 0.05 3.05 7.14 -2.91 -0.02 3.03 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -54.33 11.38 21.45 0.24 -54.09 16 8 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.52 -23.30 5.10 -862.24 -4.40 -27.70 16 13 C 0.04 1.30 5.33 86.44 0.46 1.76 16 14 C -0.11 -3.07 5.76 31.47 0.18 -2.88 16 15 C 0.09 2.77 2.78 46.12 0.13 2.90 16 16 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 17 N -0.54 -14.60 4.49 -864.06 -3.88 -18.48 16 18 C 0.05 1.44 5.18 86.33 0.45 1.89 16 19 C -0.10 -2.31 5.68 30.65 0.17 -2.14 16 20 C 0.09 1.71 3.31 45.00 0.15 1.86 16 21 N -0.85 -13.06 9.25 -168.36 -1.56 -14.62 16 22 C -0.10 -1.88 5.64 30.65 0.17 -1.71 16 23 C 0.06 1.20 5.36 86.33 0.46 1.67 16 24 C 0.07 2.73 3.78 86.65 0.33 3.06 16 25 H 0.06 3.19 6.24 -2.39 -0.01 3.18 16 26 H 0.03 1.42 6.83 -2.38 -0.02 1.40 16 27 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 29 H 0.02 0.91 7.54 -2.39 -0.02 0.89 16 30 H 0.08 2.66 8.09 -2.38 -0.02 2.64 16 31 H 0.08 2.17 8.05 -2.39 -0.02 2.15 16 32 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.06 1.94 6.42 -2.38 -0.02 1.93 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.35 4.46 9.04 -89.69 -0.81 3.65 16 39 H 0.35 4.04 9.00 -89.70 -0.81 3.24 16 40 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 1.64 7.40 -2.39 -0.02 1.62 16 44 H 0.06 2.51 7.34 -2.39 -0.02 2.50 16 45 H 0.02 1.00 7.77 -2.39 -0.02 0.99 16 Total: -1.00 -63.28 336.52 -4.35 -67.62 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.66 Total: 16.53 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 3.88 Total: -15.87 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -9.59 Total: -114.89 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.28 -4.35 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226837987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.832 kcal (2) G-P(sol) polarization free energy of solvation -63.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds