Wall clock time and date at job start Mon Mar 30 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46994 * 2 1 4 4 C 1.50700 * 109.46852 * 240.00616 * 2 1 3 5 5 H 1.08002 * 119.99878 * 239.99940 * 4 2 1 6 6 C 1.37879 * 120.00173 * 59.99622 * 4 2 1 7 7 N 1.31513 * 119.99961 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99958 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47423 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47050 * 120.00421 * 8 6 4 11 11 H 1.48501 * 109.47189 * 240.00209 * 8 6 4 12 12 N 1.46897 * 109.47146 * 120.00923 * 2 1 3 13 13 C 1.47855 * 110.99743 * 300.91742 * 12 2 1 14 14 C 1.54903 * 104.79544 * 213.64096 * 13 12 2 15 15 C 1.55145 * 101.65629 * 37.06815 * 14 13 12 16 16 H 1.08992 * 110.85599 * 82.79617 * 15 14 13 17 17 N 1.46901 * 110.70763 * 205.96933 * 15 14 13 18 18 C 1.46843 * 111.00051 * 164.38895 * 17 15 14 19 19 C 1.53038 * 109.52481 * 185.83546 * 18 17 15 20 20 C 1.53121 * 109.27822 * 300.82269 * 19 18 17 21 21 N 1.46901 * 109.52184 * 177.55562 * 20 19 18 22 22 C 1.53118 * 109.16147 * 57.65214 * 20 19 18 23 23 C 1.46852 * 110.99679 * 288.59848 * 17 15 14 24 24 C 1.47444 * 110.99937 * 180.02562 * 12 2 1 25 25 H 1.08999 * 109.47149 * 294.44600 * 1 2 3 26 26 H 1.08997 * 109.47389 * 174.44204 * 1 2 3 27 27 H 1.08996 * 109.46991 * 54.44153 * 1 2 3 28 28 H 0.96998 * 120.00045 * 179.97438 * 7 6 4 29 29 H 1.08996 * 110.36853 * 332.46658 * 13 12 2 30 30 H 1.08994 * 110.36983 * 94.80864 * 13 12 2 31 31 H 1.09001 * 110.98805 * 278.97988 * 14 13 12 32 32 H 1.08998 * 111.02664 * 155.17275 * 14 13 12 33 33 H 1.09000 * 109.46209 * 305.85193 * 18 17 15 34 34 H 1.08998 * 109.46297 * 65.81915 * 18 17 15 35 35 H 1.09001 * 109.50791 * 180.87642 * 19 18 17 36 36 H 1.09000 * 109.53222 * 60.77882 * 19 18 17 37 37 H 1.08997 * 109.57060 * 297.71678 * 20 19 18 38 38 H 1.00897 * 110.99594 * 60.31943 * 21 20 19 39 39 H 1.00905 * 110.99572 * 184.26573 * 21 20 19 40 40 H 1.08999 * 109.50317 * 182.40787 * 22 20 19 41 41 H 1.09000 * 109.53934 * 62.30415 * 22 20 19 42 42 H 1.08997 * 109.46018 * 294.17648 * 23 17 15 43 43 H 1.08996 * 109.46101 * 54.15189 * 23 17 15 44 44 H 1.08997 * 109.88534 * 242.65998 * 24 12 2 45 45 H 1.08996 * 109.88623 * 3.68420 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1473 -2.2861 -3.6041 10 1 1.1676 -1.5862 -4.8166 11 1 3.1471 -0.1854 -4.8162 12 7 2.0197 -0.6927 1.1993 13 6 1.5276 -0.0353 2.4288 14 6 2.6715 -0.2141 3.4579 15 6 3.9276 -0.0536 2.5615 16 1 4.1647 0.9994 2.4106 17 7 5.0745 -0.7645 3.1423 18 6 6.1443 -0.9358 2.1510 19 6 7.2570 -1.8030 2.7442 20 6 7.8064 -1.1284 4.0042 21 7 8.8346 -1.9844 4.6108 22 6 6.6630 -0.9177 5.0006 23 6 5.5675 -0.0762 4.3421 24 6 3.4936 -0.7118 1.2336 25 1 -0.3633 0.4253 0.9355 26 1 -0.3634 -1.0228 -0.0995 27 1 -0.3633 0.5976 -0.8360 28 1 0.7093 1.1621 -3.4843 29 1 1.3442 1.0234 2.2456 30 1 0.6194 -0.5231 2.7824 31 1 2.6386 -1.2054 3.9100 32 1 2.6353 0.5626 4.2218 33 1 5.7412 -1.4204 1.2617 34 1 6.5489 0.0396 1.8811 35 1 8.0580 -1.9171 2.0138 36 1 6.8568 -2.7837 3.0015 37 1 8.2430 -0.1648 3.7417 38 1 9.6002 -2.1380 3.9718 39 1 9.1630 -1.5937 5.4812 40 1 7.0396 -0.3992 5.8823 41 1 6.2526 -1.8839 5.2942 42 1 5.9748 0.8952 4.0619 43 1 4.7455 0.0635 5.0442 44 1 3.8521 -1.7404 1.1943 45 1 3.8915 -0.1481 0.3899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226837995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:48 Heat of formation + Delta-G solvation = 6.461443 kcal Electronic energy + Delta-G solvation = -21568.823803 eV Core-core repulsion = 18620.526159 eV Total energy + Delta-G solvation = -2948.297645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58095 -37.78102 -35.01596 -33.25841 -31.12916 -30.99171 -29.46764 -28.25433 -26.37901 -24.95127 -23.33840 -22.76332 -21.24092 -19.93435 -19.69882 -19.10663 -16.46258 -16.07607 -15.72755 -15.50392 -15.20740 -14.73714 -14.40309 -14.19300 -13.85676 -13.12755 -13.07805 -12.87489 -12.54188 -12.21066 -12.09268 -11.82481 -11.66069 -11.29974 -11.17058 -11.03266 -10.84760 -10.69051 -10.57463 -10.41045 -10.35572 -10.20674 -10.08228 -9.92180 -9.72143 -8.91209 -8.86143 -8.42736 -8.15768 -7.11147 -5.99526 -4.03057 3.30456 3.38529 3.43555 3.95497 4.26422 4.43009 4.67271 4.77729 4.98524 5.02309 5.13502 5.28527 5.31340 5.38059 5.46135 5.50807 5.52182 5.65131 5.72527 5.77247 5.83642 5.90145 6.04524 6.13270 6.15993 6.22564 6.31147 6.41031 6.56345 6.60145 6.70447 6.87402 6.94540 7.08482 7.10986 7.19643 7.26836 7.37362 7.54324 7.72875 7.87729 8.21258 8.36419 8.61616 9.04408 9.61978 11.07774 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.004835 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.062495 B = 5789.916999 C = 6784.532411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.207 3.793 3 H -0.003 1.003 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.521 5.521 13 C 0.045 3.955 14 C -0.116 4.116 15 C 0.059 3.941 16 H 0.041 0.959 17 N -0.522 5.522 18 C 0.052 3.948 19 C -0.107 4.107 20 C 0.089 3.911 21 N -0.847 5.847 22 C -0.108 4.108 23 C 0.057 3.943 24 C 0.064 3.936 25 H 0.008 0.992 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.339 0.661 39 H 0.338 0.662 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.026 0.974 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.547 -0.803 13.687 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 H 0.014 0.986 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.247 5.247 13 C -0.083 4.083 14 C -0.154 4.154 15 C -0.050 4.050 16 H 0.059 0.941 17 N -0.247 5.247 18 C -0.077 4.077 19 C -0.146 4.146 20 C -0.022 4.022 21 N -0.376 5.376 22 C -0.146 4.146 23 C -0.072 4.072 24 C -0.064 4.064 25 H 0.027 0.973 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.539 -2.211 13.667 17.399 hybrid contribution 1.505 2.203 -1.261 2.951 sum 12.044 -0.008 12.406 17.290 Atomic orbital electron populations 1.21790 0.97664 1.00402 0.98930 1.19457 0.92463 0.91709 0.86338 0.98580 1.21178 1.30827 1.12174 0.89739 0.91954 1.24931 0.95251 0.95073 0.99002 1.69917 1.37138 1.23102 1.23232 0.86491 0.78629 0.79656 0.82958 1.19686 1.21026 1.21229 1.63698 1.06098 1.52529 1.02331 1.22917 0.97340 0.97059 0.90997 1.22719 0.93778 1.01919 0.97029 1.23032 0.90390 0.95199 0.96365 0.94109 1.62003 1.07010 1.49718 1.06003 1.22140 0.91521 0.98396 0.95627 1.21591 0.97115 1.00364 0.95482 1.21410 0.92281 0.93450 0.95066 1.58727 1.16859 1.53255 1.08760 1.21590 0.94717 1.01386 0.96907 1.22042 0.97348 0.94650 0.93111 1.22731 0.89721 1.00344 0.93612 0.97349 0.94575 0.90114 0.93117 0.94629 0.91233 0.90098 0.92380 0.89312 0.95385 0.92005 0.90096 0.95376 0.84827 0.84986 0.92228 0.90116 0.95532 0.90525 0.90973 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.87 37.16 0.33 -2.90 16 2 C 0.21 5.29 1.65 -68.86 -0.11 5.17 16 3 H 0.00 -0.09 8.11 -51.93 -0.42 -0.51 16 4 C -0.50 -13.83 7.69 -34.44 -0.26 -14.09 16 5 H 0.06 1.74 7.43 -52.49 -0.39 1.35 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.67 11.38 55.43 0.63 -25.04 16 8 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 N -0.52 -11.48 5.02 -224.61 -1.13 -12.61 16 13 C 0.05 0.84 5.32 -2.29 -0.01 0.83 16 14 C -0.12 -1.80 5.89 -24.59 -0.14 -1.94 16 15 C 0.06 0.97 2.67 -65.83 -0.18 0.79 16 16 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 17 N -0.52 -7.41 4.50 -224.45 -1.01 -8.42 16 18 C 0.05 0.70 5.14 -3.84 -0.02 0.68 16 19 C -0.11 -1.24 5.68 -26.65 -0.15 -1.39 16 20 C 0.09 0.91 3.31 -67.59 -0.22 0.69 16 21 N -0.85 -7.41 9.25 -4.56 -0.04 -7.45 16 22 C -0.11 -1.13 5.64 -26.65 -0.15 -1.28 16 23 C 0.06 0.68 5.36 -3.83 -0.02 0.66 16 24 C 0.06 1.28 4.47 -2.78 -0.01 1.27 16 25 H 0.01 0.17 6.83 -51.93 -0.35 -0.18 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.08 2.18 6.24 -51.93 -0.32 1.85 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 0.68 7.61 -51.93 -0.40 0.29 16 30 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.78 8.02 -51.93 -0.42 0.36 16 33 H 0.09 1.32 6.14 -51.93 -0.32 1.00 16 34 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.34 2.53 9.04 -39.29 -0.36 2.18 16 39 H 0.34 2.42 9.00 -39.29 -0.35 2.06 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.88 7.30 -51.93 -0.38 0.50 16 44 H 0.07 1.45 7.00 -51.93 -0.36 1.08 16 45 H 0.06 1.32 7.04 -51.93 -0.37 0.95 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -28.81 335.56 -10.79 -39.59 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.22 Total: 2.41 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.99 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -1.55 Total: -53.52 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.81 -10.79 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226837995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.056 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds