Wall clock time and date at job start Mon Mar 30 2020 05:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46994 * 2 1 4 4 C 1.50700 * 109.46852 * 240.00616 * 2 1 3 5 5 H 1.08002 * 119.99878 * 239.99940 * 4 2 1 6 6 C 1.37879 * 120.00173 * 59.99622 * 4 2 1 7 7 N 1.31513 * 119.99961 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99958 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47423 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47050 * 120.00421 * 8 6 4 11 11 H 1.48501 * 109.47189 * 240.00209 * 8 6 4 12 12 N 1.46897 * 109.47146 * 120.00923 * 2 1 3 13 13 C 1.47855 * 110.99743 * 300.91742 * 12 2 1 14 14 C 1.54903 * 104.79544 * 213.64096 * 13 12 2 15 15 C 1.55145 * 101.65629 * 37.06815 * 14 13 12 16 16 H 1.08992 * 110.85599 * 82.79617 * 15 14 13 17 17 N 1.46901 * 110.70763 * 205.96933 * 15 14 13 18 18 C 1.46843 * 111.00051 * 164.38895 * 17 15 14 19 19 C 1.53038 * 109.52481 * 185.83546 * 18 17 15 20 20 C 1.53121 * 109.27822 * 300.82269 * 19 18 17 21 21 N 1.46901 * 109.52184 * 177.55562 * 20 19 18 22 22 C 1.53118 * 109.16147 * 57.65214 * 20 19 18 23 23 C 1.46852 * 110.99679 * 288.59848 * 17 15 14 24 24 C 1.47444 * 110.99937 * 180.02562 * 12 2 1 25 25 H 1.08999 * 109.47149 * 294.44600 * 1 2 3 26 26 H 1.08997 * 109.47389 * 174.44204 * 1 2 3 27 27 H 1.08996 * 109.46991 * 54.44153 * 1 2 3 28 28 H 0.96998 * 120.00045 * 179.97438 * 7 6 4 29 29 H 1.08996 * 110.36853 * 332.46658 * 13 12 2 30 30 H 1.08994 * 110.36983 * 94.80864 * 13 12 2 31 31 H 1.09001 * 110.98805 * 278.97988 * 14 13 12 32 32 H 1.08998 * 111.02664 * 155.17275 * 14 13 12 33 33 H 1.09000 * 109.46209 * 305.85193 * 18 17 15 34 34 H 1.08998 * 109.46297 * 65.81915 * 18 17 15 35 35 H 1.09001 * 109.50791 * 180.87642 * 19 18 17 36 36 H 1.09000 * 109.53222 * 60.77882 * 19 18 17 37 37 H 1.08997 * 109.57060 * 297.71678 * 20 19 18 38 38 H 1.00897 * 110.99594 * 60.31943 * 21 20 19 39 39 H 1.00905 * 110.99572 * 184.26573 * 21 20 19 40 40 H 1.08999 * 109.50317 * 182.40787 * 22 20 19 41 41 H 1.09000 * 109.53934 * 62.30415 * 22 20 19 42 42 H 1.08997 * 109.46018 * 294.17648 * 23 17 15 43 43 H 1.08996 * 109.46101 * 54.15189 * 23 17 15 44 44 H 1.08997 * 109.88534 * 242.65998 * 24 12 2 45 45 H 1.08996 * 109.88623 * 3.68420 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1473 -2.2861 -3.6041 10 1 1.1676 -1.5862 -4.8166 11 1 3.1471 -0.1854 -4.8162 12 7 2.0197 -0.6927 1.1993 13 6 1.5276 -0.0353 2.4288 14 6 2.6715 -0.2141 3.4579 15 6 3.9276 -0.0536 2.5615 16 1 4.1647 0.9994 2.4106 17 7 5.0745 -0.7645 3.1423 18 6 6.1443 -0.9358 2.1510 19 6 7.2570 -1.8030 2.7442 20 6 7.8064 -1.1284 4.0042 21 7 8.8346 -1.9844 4.6108 22 6 6.6630 -0.9177 5.0006 23 6 5.5675 -0.0762 4.3421 24 6 3.4936 -0.7118 1.2336 25 1 -0.3633 0.4253 0.9355 26 1 -0.3634 -1.0228 -0.0995 27 1 -0.3633 0.5976 -0.8360 28 1 0.7093 1.1621 -3.4843 29 1 1.3442 1.0234 2.2456 30 1 0.6194 -0.5231 2.7824 31 1 2.6386 -1.2054 3.9100 32 1 2.6353 0.5626 4.2218 33 1 5.7412 -1.4204 1.2617 34 1 6.5489 0.0396 1.8811 35 1 8.0580 -1.9171 2.0138 36 1 6.8568 -2.7837 3.0015 37 1 8.2430 -0.1648 3.7417 38 1 9.6002 -2.1380 3.9718 39 1 9.1630 -1.5937 5.4812 40 1 7.0396 -0.3992 5.8823 41 1 6.2526 -1.8839 5.2942 42 1 5.9748 0.8952 4.0619 43 1 4.7455 0.0635 5.0442 44 1 3.8521 -1.7404 1.1943 45 1 3.8915 -0.1481 0.3899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226837995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:47 Heat of formation + Delta-G solvation = -15.017170 kcal Electronic energy + Delta-G solvation = -21569.755186 eV Core-core repulsion = 18620.526159 eV Total energy + Delta-G solvation = -2949.229027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81532 -39.13225 -36.31843 -34.96344 -32.74983 -32.01058 -30.68691 -29.87944 -27.90462 -26.94906 -24.47308 -23.78448 -22.89923 -21.27483 -20.98301 -20.53381 -18.23581 -17.63340 -17.17983 -16.46061 -16.25793 -16.03604 -15.82306 -15.43183 -15.24568 -14.87218 -14.35193 -14.05389 -13.92644 -13.74014 -13.58865 -13.27434 -13.07097 -12.89251 -12.61485 -12.46121 -12.32653 -12.17138 -12.14807 -12.07862 -11.83214 -11.72152 -11.55336 -11.46407 -11.15113 -10.92959 -10.55516 -9.60608 -9.30974 -8.90889 -8.13256 -6.24297 1.38733 1.40936 1.52983 2.40998 2.81885 3.15409 3.42409 3.51907 3.61256 3.86582 3.87584 3.95880 4.17894 4.27920 4.31100 4.40271 4.44954 4.54424 4.62693 4.67640 4.75634 4.84290 4.85145 4.87382 4.91338 4.97988 4.99967 5.03286 5.09608 5.12686 5.19175 5.23789 5.27904 5.42488 5.47014 5.72058 5.77158 6.11747 6.19483 6.24278 6.26621 6.39726 6.63328 6.69963 6.90297 7.44945 8.93359 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.023191 B = 0.004835 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.062495 B = 5789.916999 C = 6784.532411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.214 3.786 3 H -0.038 1.038 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.280 1.280 12 N -0.534 5.534 13 C 0.041 3.959 14 C -0.100 4.100 15 C 0.070 3.930 16 H 0.034 0.966 17 N -0.526 5.526 18 C 0.051 3.949 19 C -0.101 4.101 20 C 0.093 3.907 21 N -0.850 5.850 22 C -0.101 4.101 23 C 0.056 3.944 24 C 0.070 3.930 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.057 0.943 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.031 0.969 38 H 0.347 0.653 39 H 0.349 0.651 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.028 0.972 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.698 -1.199 15.294 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 H -0.021 1.021 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.206 1.206 12 N -0.259 5.259 13 C -0.087 4.087 14 C -0.138 4.138 15 C -0.039 4.039 16 H 0.052 0.948 17 N -0.251 5.251 18 C -0.077 4.077 19 C -0.139 4.139 20 C -0.018 4.018 21 N -0.381 5.381 22 C -0.140 4.140 23 C -0.072 4.072 24 C -0.058 4.058 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.161 0.839 39 H 0.163 0.837 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.706 -2.612 15.300 19.441 hybrid contribution 1.167 2.328 -1.734 3.129 sum 12.873 -0.284 13.565 18.703 Atomic orbital electron populations 1.21608 0.97190 0.99577 0.99217 1.19226 0.92755 0.89836 0.87531 1.02103 1.21397 1.30986 1.12080 0.91092 0.92918 1.25694 0.95365 0.95746 1.01834 1.70033 1.37871 1.24165 1.23991 0.85502 0.78214 0.78627 0.79287 1.19322 1.20422 1.20560 1.63613 1.07427 1.52438 1.02449 1.23023 0.98973 0.96388 0.90339 1.22637 0.91402 1.03272 0.96483 1.22807 0.91941 0.94476 0.94706 0.94781 1.62024 1.06738 1.49692 1.06646 1.22119 0.91959 0.98486 0.95140 1.21515 0.96574 0.99223 0.96582 1.21302 0.92687 0.93538 0.94308 1.58665 1.17072 1.52937 1.09465 1.21542 0.94160 1.00738 0.97521 1.22145 0.98237 0.94786 0.92049 1.22586 0.88563 0.99827 0.94842 0.94885 0.95208 0.92467 0.92927 0.95353 0.90240 0.89600 0.89322 0.91422 0.95588 0.90972 0.91409 0.95092 0.83934 0.83701 0.89987 0.91217 0.95347 0.89568 0.91569 0.95218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.87 71.98 0.64 -5.31 16 2 C 0.21 11.27 1.65 44.17 0.07 11.34 16 3 H -0.04 -2.25 8.11 -2.39 -0.02 -2.27 16 4 C -0.52 -29.39 7.69 25.60 0.20 -29.19 16 5 H 0.05 3.03 7.43 -2.91 -0.02 3.00 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.91 11.38 21.45 0.24 -53.67 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.53 -23.86 5.02 -864.54 -4.34 -28.20 16 13 C 0.04 1.48 5.32 86.77 0.46 1.94 16 14 C -0.10 -2.89 5.89 31.98 0.19 -2.70 16 15 C 0.07 2.25 2.67 46.13 0.12 2.37 16 16 H 0.03 1.15 8.12 -2.39 -0.02 1.13 16 17 N -0.53 -14.34 4.50 -864.02 -3.89 -18.24 16 18 C 0.05 1.38 5.14 86.33 0.44 1.83 16 19 C -0.10 -2.21 5.68 30.65 0.17 -2.04 16 20 C 0.09 1.69 3.31 45.00 0.15 1.84 16 21 N -0.85 -12.77 9.25 -168.35 -1.56 -14.32 16 22 C -0.10 -1.85 5.64 30.65 0.17 -1.68 16 23 C 0.06 1.20 5.36 86.32 0.46 1.66 16 24 C 0.07 2.87 4.47 86.68 0.39 3.25 16 25 H 0.03 1.45 6.83 -2.39 -0.02 1.43 16 26 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 3.15 6.24 -2.39 -0.01 3.14 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.03 1.07 7.61 -2.39 -0.02 1.05 16 30 H 0.08 2.72 8.09 -2.39 -0.02 2.70 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.09 2.08 8.02 -2.39 -0.02 2.06 16 33 H 0.07 2.08 6.14 -2.39 -0.01 2.06 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.35 4.37 9.04 -89.70 -0.81 3.56 16 39 H 0.35 3.99 9.00 -89.69 -0.81 3.18 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.03 0.61 8.14 -2.39 -0.02 0.60 16 43 H 0.09 1.70 7.30 -2.39 -0.02 1.68 16 44 H 0.07 2.74 7.00 -2.39 -0.02 2.73 16 45 H 0.03 1.37 7.04 -2.39 -0.02 1.35 16 Total: -1.00 -62.69 335.56 -4.25 -66.95 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -0.66 Total: 16.43 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 3.92 Total: -15.55 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -9.54 Total: -114.43 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -62.69 -4.25 -66.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226837995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.928 kcal (2) G-P(sol) polarization free energy of solvation -62.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds