Wall clock time and date at job start Mon Mar 30 2020 04:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47704 * 2 1 4 4 C 1.46893 * 111.00659 * 160.28617 * 3 2 1 5 5 C 1.53000 * 109.46936 * 287.97385 * 4 3 2 6 6 C 1.46900 * 110.99667 * 284.23952 * 3 2 1 7 7 C 1.53006 * 109.47230 * 169.99871 * 6 3 2 8 8 C 1.50702 * 109.47255 * 179.97438 * 7 6 3 9 9 N 1.29950 * 126.28620 * 90.02051 * 8 7 6 10 10 O 1.21292 * 110.24945 * 179.97438 * 9 8 7 11 11 C 1.33641 * 109.81249 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.55250 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47424 * 269.97850 * 12 11 10 14 14 C 1.50702 * 109.47424 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99964 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00085 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00005 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47079 * 59.99765 * 18 16 14 20 20 H 1.48497 * 109.47116 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47042 * 300.00213 * 18 16 14 22 22 N 1.31127 * 106.90036 * 359.76741 * 11 10 9 23 23 H 1.08996 * 109.47387 * 305.51106 * 1 2 3 24 24 H 1.09006 * 109.46293 * 65.50467 * 1 2 3 25 25 H 1.08990 * 109.47343 * 185.50227 * 1 2 3 26 26 H 1.08998 * 109.47392 * 239.99389 * 2 1 3 27 27 H 1.09002 * 109.47100 * 119.99754 * 2 1 3 28 28 H 1.09002 * 109.47190 * 47.97150 * 4 3 2 29 29 H 1.08993 * 109.47579 * 167.97183 * 4 3 2 30 30 H 1.09001 * 109.47257 * 179.16239 * 5 4 3 31 31 H 1.09000 * 109.47499 * 299.16844 * 5 4 3 32 32 H 1.09004 * 109.47430 * 59.16940 * 5 4 3 33 33 H 1.09003 * 109.47543 * 49.99692 * 6 3 2 34 34 H 1.09003 * 109.47107 * 289.99846 * 6 3 2 35 35 H 1.08999 * 109.47134 * 59.99984 * 7 6 3 36 36 H 1.09000 * 109.46567 * 299.99951 * 7 6 3 37 37 H 1.09003 * 109.47376 * 29.97584 * 12 11 10 38 38 H 1.08994 * 109.47304 * 149.97752 * 12 11 10 39 39 H 1.09003 * 109.46627 * 300.00193 * 13 12 11 40 40 H 1.08999 * 109.47351 * 59.99409 * 13 12 11 41 41 H 0.97003 * 119.99963 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4124 1.4509 0.4626 5 6 3.4626 1.1863 1.9687 6 6 1.8772 1.9936 -1.3293 7 6 2.1591 3.4946 -1.2359 8 6 2.0135 4.1190 -2.5997 9 7 0.9248 4.6166 -3.1055 10 8 1.1367 5.0428 -4.2211 11 6 2.4196 4.8512 -4.5430 12 6 3.0872 5.2367 -5.8379 13 6 2.9819 4.0775 -6.8310 14 6 3.6500 4.4628 -8.1256 15 1 4.1040 5.4371 -8.2299 16 6 3.6817 3.5714 -9.1770 17 7 3.1293 2.3847 -9.0498 18 14 4.5093 4.0492 -10.7820 19 1 5.9400 4.3565 -10.5289 20 1 4.4071 2.9240 -11.7457 21 1 3.8383 5.2471 -11.3475 22 7 2.9875 4.2678 -3.5151 23 1 -0.3634 0.5969 0.8365 24 1 -0.3632 0.4261 -0.9353 25 1 -0.3633 -1.0228 0.0985 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0044 0.6984 -0.0584 29 1 3.8181 2.4408 0.2539 30 1 4.4974 1.2205 2.3094 31 1 2.8827 1.9473 2.4909 32 1 3.0434 0.2023 2.1789 33 1 0.8621 1.8366 -1.6940 34 1 2.5859 1.5331 -2.0177 35 1 3.1742 3.6516 -0.8713 36 1 1.4504 3.9551 -0.5475 37 1 2.5950 6.1163 -6.2528 38 1 4.1374 5.4617 -5.6523 39 1 3.4741 3.1979 -6.4161 40 1 1.9316 3.8524 -7.0166 41 1 3.1513 1.7576 -9.7896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233440801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:08 Heat of formation + Delta-G solvation = 48.306158 kcal Electronic energy + Delta-G solvation = -19936.699401 eV Core-core repulsion = 16854.383184 eV Total energy + Delta-G solvation = -3082.316216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.11677 -38.53809 -35.74445 -34.65542 -32.88082 -32.04346 -31.63383 -30.09189 -28.25394 -25.85137 -24.26339 -23.25335 -22.99223 -21.80793 -20.60574 -20.18223 -17.67523 -17.01287 -16.41106 -15.97879 -15.74671 -15.10649 -14.59605 -14.44804 -14.20230 -13.84437 -13.55428 -13.02289 -12.73696 -12.50124 -12.38676 -12.31722 -11.97958 -11.78551 -11.68002 -11.65019 -11.55107 -11.09597 -10.99025 -10.84207 -10.78193 -10.66653 -10.53233 -10.13394 -10.00415 -9.35610 -9.18059 -8.54833 -8.46259 -6.10795 -4.15707 1.60608 2.60846 3.29091 3.32901 3.34469 3.38327 3.56202 4.12251 4.37107 4.41848 4.74038 4.77461 4.97164 5.00826 5.10441 5.25741 5.27313 5.27525 5.32536 5.44823 5.50424 5.56383 5.67981 5.76699 5.78755 5.82571 5.91530 5.99992 6.03964 6.08034 6.16513 6.24695 6.43020 6.61593 6.85356 6.89375 7.47243 7.54422 7.84494 8.20027 8.60453 8.89349 9.49269 11.00410 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.003380 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.349029 B = 8282.995199 C = 8663.849419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.537 5.537 4 C 0.041 3.959 5 C -0.146 4.146 6 C 0.060 3.940 7 C -0.019 4.019 8 C 0.164 3.836 9 N -0.396 5.396 10 O 0.068 5.932 11 C 0.214 3.786 12 C -0.029 4.029 13 C 0.028 3.972 14 C -0.527 4.527 15 H 0.061 0.939 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 N -0.496 5.496 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 -1.644 18.516 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.262 5.262 4 C -0.087 4.087 5 C -0.203 4.203 6 C -0.069 4.069 7 C -0.059 4.059 8 C -0.110 4.110 9 N -0.107 5.107 10 O 0.012 5.988 11 C -0.005 4.005 12 C -0.068 4.068 13 C -0.010 4.010 14 C -0.565 4.565 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 N -0.230 5.230 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.468 -1.711 19.411 19.642 hybrid contribution 0.934 -0.318 -1.692 1.959 sum -1.534 -2.029 17.719 17.901 Atomic orbital electron populations 1.21775 0.94794 1.01419 1.02553 1.22124 0.96335 0.88582 1.00968 1.62048 1.20496 1.18265 1.25439 1.22199 0.88543 1.01807 0.96104 1.21781 1.01375 1.01944 0.95242 1.22049 1.02250 0.93016 0.89617 1.19837 1.04210 0.94383 0.87429 1.25652 0.85215 1.00535 0.99550 1.74554 1.23946 1.17177 0.95039 1.85270 1.30123 1.59064 1.24378 1.29626 0.80831 0.91925 0.98154 1.20753 0.99020 1.02676 0.84332 1.19148 0.98330 0.91508 0.91991 1.21034 1.37118 1.01121 0.97215 0.92063 1.25011 0.95352 0.94860 0.99001 1.69959 1.44100 1.06547 1.32389 0.86562 0.80004 0.78051 0.82846 1.20078 1.21252 1.20058 1.71927 1.30366 1.19636 1.01092 0.91794 0.92718 0.92417 0.94540 0.90611 0.94579 0.90281 0.92378 0.91900 0.92821 0.90147 0.93802 0.88937 0.88639 0.89080 0.88232 0.95598 0.95812 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.94 37.16 0.37 -0.98 16 2 C 0.05 0.46 5.55 -3.83 -0.02 0.44 16 3 N -0.54 -5.76 4.39 -234.63 -1.03 -6.79 16 4 C 0.04 0.39 5.55 -3.83 -0.02 0.37 16 5 C -0.15 -1.14 9.99 37.16 0.37 -0.77 16 6 C 0.06 0.76 4.77 -3.82 -0.02 0.74 16 7 C -0.02 -0.25 5.81 -27.88 -0.16 -0.42 16 8 C 0.16 2.82 7.47 -156.37 -1.17 1.65 16 9 N -0.40 -7.28 12.16 30.89 0.38 -6.90 16 10 O 0.07 1.29 11.31 18.11 0.20 1.49 16 11 C 0.21 4.10 7.77 -13.06 -0.10 3.99 16 12 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 13 C 0.03 0.70 4.96 -27.88 -0.14 0.56 16 14 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 18 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 N -0.50 -9.48 11.55 -9.87 -0.11 -9.60 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.56 6.97 -51.93 -0.36 0.19 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 27 H 0.08 0.64 6.24 -51.93 -0.32 0.31 16 28 H 0.04 0.36 8.05 -51.93 -0.42 -0.06 16 29 H 0.08 0.76 5.94 -51.93 -0.31 0.45 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.40 6.52 -51.93 -0.34 0.06 16 33 H 0.08 1.08 6.72 -51.93 -0.35 0.73 16 34 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 35 H 0.09 1.11 6.28 -51.93 -0.33 0.78 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 38 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -29.60 337.86 -7.83 -37.42 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.61 Total: -3.26 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.46 Total: -7.93 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.03 Total: -48.65 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.20 Total: 1.49 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.60 -7.83 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233440801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.731 kcal (2) G-P(sol) polarization free energy of solvation -29.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds