Wall clock time and date at job start Mon Mar 30 2020 04:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47704 * 2 1 4 4 C 1.46893 * 111.00659 * 160.28617 * 3 2 1 5 5 C 1.53000 * 109.46936 * 287.97385 * 4 3 2 6 6 C 1.46900 * 110.99667 * 284.23952 * 3 2 1 7 7 C 1.53006 * 109.47230 * 169.99871 * 6 3 2 8 8 C 1.50702 * 109.47255 * 179.97438 * 7 6 3 9 9 N 1.29950 * 126.28620 * 90.02051 * 8 7 6 10 10 O 1.21292 * 110.24945 * 179.97438 * 9 8 7 11 11 C 1.33641 * 109.81249 * 0.02562 * 10 9 8 12 12 C 1.50702 * 126.55250 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47424 * 269.97850 * 12 11 10 14 14 C 1.50702 * 109.47424 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99745 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99964 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00085 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00005 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47079 * 59.99765 * 18 16 14 20 20 H 1.48497 * 109.47116 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47042 * 300.00213 * 18 16 14 22 22 N 1.31127 * 106.90036 * 359.76741 * 11 10 9 23 23 H 1.08996 * 109.47387 * 305.51106 * 1 2 3 24 24 H 1.09006 * 109.46293 * 65.50467 * 1 2 3 25 25 H 1.08990 * 109.47343 * 185.50227 * 1 2 3 26 26 H 1.08998 * 109.47392 * 239.99389 * 2 1 3 27 27 H 1.09002 * 109.47100 * 119.99754 * 2 1 3 28 28 H 1.09002 * 109.47190 * 47.97150 * 4 3 2 29 29 H 1.08993 * 109.47579 * 167.97183 * 4 3 2 30 30 H 1.09001 * 109.47257 * 179.16239 * 5 4 3 31 31 H 1.09000 * 109.47499 * 299.16844 * 5 4 3 32 32 H 1.09004 * 109.47430 * 59.16940 * 5 4 3 33 33 H 1.09003 * 109.47543 * 49.99692 * 6 3 2 34 34 H 1.09003 * 109.47107 * 289.99846 * 6 3 2 35 35 H 1.08999 * 109.47134 * 59.99984 * 7 6 3 36 36 H 1.09000 * 109.46567 * 299.99951 * 7 6 3 37 37 H 1.09003 * 109.47376 * 29.97584 * 12 11 10 38 38 H 1.08994 * 109.47304 * 149.97752 * 12 11 10 39 39 H 1.09003 * 109.46627 * 300.00193 * 13 12 11 40 40 H 1.08999 * 109.47351 * 59.99409 * 13 12 11 41 41 H 0.97003 * 119.99963 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4124 1.4509 0.4626 5 6 3.4626 1.1863 1.9687 6 6 1.8772 1.9936 -1.3293 7 6 2.1591 3.4946 -1.2359 8 6 2.0135 4.1190 -2.5997 9 7 0.9248 4.6166 -3.1055 10 8 1.1367 5.0428 -4.2211 11 6 2.4196 4.8512 -4.5430 12 6 3.0872 5.2367 -5.8379 13 6 2.9819 4.0775 -6.8310 14 6 3.6500 4.4628 -8.1256 15 1 4.1040 5.4371 -8.2299 16 6 3.6817 3.5714 -9.1770 17 7 3.1293 2.3847 -9.0498 18 14 4.5093 4.0492 -10.7820 19 1 5.9400 4.3565 -10.5289 20 1 4.4071 2.9240 -11.7457 21 1 3.8383 5.2471 -11.3475 22 7 2.9875 4.2678 -3.5151 23 1 -0.3634 0.5969 0.8365 24 1 -0.3632 0.4261 -0.9353 25 1 -0.3633 -1.0228 0.0985 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0044 0.6984 -0.0584 29 1 3.8181 2.4408 0.2539 30 1 4.4974 1.2205 2.3094 31 1 2.8827 1.9473 2.4909 32 1 3.0434 0.2023 2.1789 33 1 0.8621 1.8366 -1.6940 34 1 2.5859 1.5331 -2.0177 35 1 3.1742 3.6516 -0.8713 36 1 1.4504 3.9551 -0.5475 37 1 2.5950 6.1163 -6.2528 38 1 4.1374 5.4617 -5.6523 39 1 3.4741 3.1979 -6.4161 40 1 1.9316 3.8524 -7.0166 41 1 3.1513 1.7576 -9.7896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233440801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:08 Heat of formation + Delta-G solvation = 29.211623 kcal Electronic energy + Delta-G solvation = -19937.527402 eV Core-core repulsion = 16854.383184 eV Total energy + Delta-G solvation = -3083.144218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.58028 -39.43254 -37.17222 -36.35035 -34.60579 -33.00020 -32.75973 -31.67979 -29.17685 -27.74625 -25.42262 -24.59930 -23.96235 -23.40959 -21.84696 -21.30367 -19.18663 -18.60212 -18.25189 -16.87475 -16.69609 -16.50799 -16.19703 -15.67525 -15.30864 -14.99415 -14.86955 -14.35392 -14.22383 -13.78330 -13.59458 -13.37555 -13.22306 -13.01903 -12.78951 -12.73508 -12.60220 -12.52408 -12.42922 -12.28213 -12.11596 -11.93108 -11.83010 -11.65071 -11.49293 -11.36773 -10.77291 -10.56282 -9.43819 -8.20747 -6.32998 0.11166 1.17181 1.45977 1.48747 1.56295 1.85840 2.42965 2.50103 2.92560 3.12903 3.14635 3.77598 3.88957 3.99847 4.09048 4.23642 4.25181 4.36322 4.44405 4.51877 4.52727 4.57468 4.61395 4.68592 4.73868 4.84063 4.90344 4.94269 4.98293 5.00148 5.08641 5.12549 5.32784 5.38620 5.42484 5.52322 5.76849 5.96369 6.07050 6.12530 6.82565 7.12898 7.37311 8.91472 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.003380 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.349029 B = 8282.995199 C = 8663.849419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.535 5.535 4 C 0.037 3.963 5 C -0.139 4.139 6 C 0.068 3.932 7 C -0.014 4.014 8 C 0.170 3.830 9 N -0.407 5.407 10 O 0.059 5.941 11 C 0.208 3.792 12 C -0.014 4.014 13 C 0.035 3.965 14 C -0.540 4.540 15 H 0.079 0.921 16 C 0.000 4.000 17 N -0.936 5.936 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.263 1.263 22 N -0.511 5.511 23 H 0.065 0.935 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.093 0.907 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.023 0.977 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.114 0.886 39 H -0.008 1.008 40 H -0.003 1.003 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -0.784 19.361 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.260 5.260 4 C -0.090 4.090 5 C -0.197 4.197 6 C -0.061 4.061 7 C -0.053 4.053 8 C -0.104 4.104 9 N -0.119 5.119 10 O 0.006 5.994 11 C -0.011 4.011 12 C -0.053 4.053 13 C -0.004 4.004 14 C -0.577 4.577 15 H 0.097 0.903 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.187 1.187 22 N -0.245 5.245 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.011 0.989 40 H 0.015 0.985 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.726 -0.827 20.261 20.351 hybrid contribution 0.683 -0.638 -1.873 2.093 sum -1.043 -1.465 18.389 18.476 Atomic orbital electron populations 1.21752 0.94371 1.02308 1.01756 1.22213 0.96707 0.88003 1.01309 1.62110 1.21358 1.18841 1.23713 1.22301 0.87676 1.01696 0.97372 1.21737 1.02263 1.02129 0.93566 1.21879 1.01006 0.92817 0.90444 1.20000 1.05562 0.94283 0.85491 1.26302 0.84303 0.99411 1.00377 1.74550 1.24437 1.17946 0.94998 1.85256 1.29981 1.59377 1.24795 1.29552 0.81042 0.92209 0.98295 1.20525 1.00392 1.01157 0.83236 1.18936 0.95983 0.92407 0.93049 1.21544 1.36639 1.01761 0.97798 0.90292 1.26009 0.96037 0.94729 1.03052 1.70113 1.45916 1.07933 1.33578 0.85420 0.79300 0.77839 0.78025 1.18908 1.21520 1.18725 1.71941 1.31234 1.19705 1.01622 0.91575 0.94260 0.90916 0.95570 0.88853 0.95104 0.90289 0.91148 0.91919 0.92378 0.91164 0.95872 0.87485 0.87128 0.86570 0.86762 0.98927 0.98488 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.94 71.98 0.72 -1.79 16 2 C 0.05 0.83 5.55 86.30 0.48 1.31 16 3 N -0.54 -10.95 4.39 -896.25 -3.94 -14.88 16 4 C 0.04 0.66 5.55 86.30 0.48 1.14 16 5 C -0.14 -1.88 9.99 71.98 0.72 -1.17 16 6 C 0.07 1.72 4.77 86.30 0.41 2.13 16 7 C -0.01 -0.36 5.81 29.85 0.17 -0.19 16 8 C 0.17 5.75 7.47 138.46 1.03 6.78 16 9 N -0.41 -14.83 12.16 -60.35 -0.73 -15.56 16 10 O 0.06 2.25 11.31 74.86 0.85 3.10 16 11 C 0.21 7.95 7.77 88.38 0.69 8.64 16 12 C -0.01 -0.54 5.78 29.85 0.17 -0.37 16 13 C 0.03 1.74 4.96 29.85 0.15 1.89 16 14 C -0.54 -28.64 9.11 25.60 0.23 -28.40 16 15 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 17 N -0.94 -55.92 13.29 21.45 0.28 -55.63 16 18 Si 0.97 42.40 29.54 68.60 2.03 44.42 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 22 N -0.51 -19.39 11.55 -303.22 -3.50 -22.89 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.04 0.79 6.97 -2.38 -0.02 0.78 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.03 0.54 8.00 -2.39 -0.02 0.52 16 27 H 0.09 1.40 6.24 -2.39 -0.01 1.38 16 28 H 0.03 0.58 8.05 -2.39 -0.02 0.56 16 29 H 0.08 1.40 5.94 -2.39 -0.01 1.38 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.73 6.52 -2.39 -0.02 0.72 16 33 H 0.07 1.91 6.72 -2.39 -0.02 1.89 16 34 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 35 H 0.11 2.41 6.28 -2.39 -0.01 2.39 16 36 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.12 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 39 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -63.65 337.86 1.70 -61.95 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.00 Total: 9.09 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 5.71 Total: -9.59 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -7.89 Total: -108.97 kcal Atomic # 8 Polarization: 2.25 SS G_CDS: 0.85 Total: 3.10 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -63.65 1.70 -61.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233440801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.164 kcal (2) G-P(sol) polarization free energy of solvation -63.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds