Wall clock time and date at job start Mon Mar 30 2020 04:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99853 * 2 1 4 4 C 1.53006 * 109.46944 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46975 * 64.99999 * 4 3 2 6 6 C 1.46904 * 110.99845 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47100 * 179.97438 * 6 5 4 8 8 C 1.34675 * 125.98512 * 95.00051 * 7 6 5 9 9 N 1.36879 * 106.81522 * 179.97438 * 8 7 6 10 10 C 1.46499 * 126.39849 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47021 * 89.99861 * 10 9 8 12 12 C 1.53004 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46961 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00166 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99982 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99838 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00276 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46846 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46646 * 120.00260 * 17 15 13 20 20 H 1.48496 * 109.47563 * 240.00256 * 17 15 13 21 21 C 1.35041 * 107.20828 * 0.02562 * 9 8 7 22 22 N 1.30503 * 108.69928 * 359.97438 * 21 9 8 23 23 H 1.09003 * 109.47021 * 300.00535 * 1 2 3 24 24 H 1.08998 * 109.47512 * 60.00412 * 1 2 3 25 25 H 1.09004 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47493 * 59.99768 * 3 2 1 27 27 H 1.09004 * 109.47144 * 299.99522 * 3 2 1 28 28 H 1.08997 * 109.47216 * 304.99815 * 4 3 2 29 29 H 1.08998 * 109.46968 * 184.99543 * 4 3 2 30 30 H 1.00903 * 111.00016 * 303.95028 * 5 4 3 31 31 H 1.09002 * 109.47097 * 59.99427 * 6 5 4 32 32 H 1.09000 * 109.46789 * 299.99952 * 6 5 4 33 33 H 1.07999 * 126.59056 * 359.73822 * 8 7 6 34 34 H 1.08996 * 109.47327 * 210.00288 * 10 9 8 35 35 H 1.09002 * 109.46825 * 330.00335 * 10 9 8 36 36 H 1.08996 * 109.47418 * 300.00371 * 11 10 9 37 37 H 1.09002 * 109.46934 * 60.00540 * 11 10 9 38 38 H 1.09005 * 109.47112 * 300.00020 * 12 11 10 39 39 H 1.08996 * 109.47355 * 60.00072 * 12 11 10 40 40 H 0.97006 * 119.99879 * 179.97438 * 16 15 13 41 41 H 1.07997 * 125.65385 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9768 0.5627 -1.2562 6 6 5.4394 0.4297 -1.2921 7 6 5.8538 -0.2113 -2.5914 8 6 6.2404 0.4380 -3.7062 9 7 6.5267 -0.5186 -4.6424 10 6 6.9871 -0.2831 -6.0131 11 6 8.5162 -0.2356 -6.0364 12 6 8.9971 0.0109 -7.4678 13 6 10.5032 0.0571 -7.4908 14 1 11.0616 -0.0757 -6.5759 15 6 11.1683 0.2688 -8.6799 16 7 10.4883 0.4310 -9.7939 17 14 13.0352 0.3268 -8.7084 18 1 13.5579 0.1183 -7.3340 19 1 13.5500 -0.7427 -9.6009 20 1 13.4818 1.6501 -9.2128 21 6 6.3045 -1.7199 -4.0671 22 7 5.9024 -1.5283 -2.8404 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.8515 0.5682 0.8409 29 1 3.9785 2.1765 0.0888 30 1 3.5293 -0.3311 -1.3938 31 1 5.7682 -0.1921 -0.4594 32 1 5.8960 1.4162 -1.2112 33 1 6.3075 1.5079 -3.8375 34 1 6.6388 -1.0905 -6.6572 35 1 6.5887 0.6658 -6.3723 36 1 8.8645 0.5718 -5.3923 37 1 8.9147 -1.1845 -5.6772 38 1 8.6488 -0.7963 -8.1122 39 1 8.5986 0.9599 -7.8266 40 1 10.9563 0.5803 -10.6304 41 1 6.4381 -2.6801 -4.5429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234737510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:41 Heat of formation + Delta-G solvation = -2.338466 kcal Electronic energy + Delta-G solvation = -19205.179511 eV Core-core repulsion = 16120.667179 eV Total energy + Delta-G solvation = -3084.512332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.78306 -38.36735 -36.15737 -35.11130 -33.08658 -31.22504 -30.63318 -28.70019 -27.00978 -26.40045 -24.60292 -23.44851 -22.06772 -20.98683 -20.33556 -19.89419 -17.06087 -16.85292 -16.33788 -16.18544 -15.64332 -15.08035 -14.99052 -14.53740 -14.48347 -14.20469 -13.89350 -13.60979 -13.24100 -12.55159 -12.52457 -12.17867 -12.10100 -11.82224 -11.74691 -11.64382 -11.32928 -11.00300 -10.95133 -10.65344 -9.97507 -9.96521 -9.83448 -9.64387 -9.33652 -9.01893 -8.51023 -8.45819 -8.10622 -6.10475 -4.13452 2.35638 3.14909 3.25493 3.26425 3.33454 3.37892 3.52001 4.28121 4.38494 4.77037 4.78897 4.98605 5.02015 5.04881 5.10521 5.15564 5.18552 5.26035 5.34603 5.36125 5.43323 5.53332 5.55535 5.61422 5.70330 5.77889 6.09383 6.24687 6.52159 6.65357 6.81744 6.84145 6.89381 7.03320 7.36473 7.50429 7.51408 7.61012 7.87381 8.28823 8.34322 8.92902 9.51623 11.00727 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.046773 B = 0.002471 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.490699 B =11329.007167 C =11446.827121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.061 3.939 4 C 0.060 3.940 5 N -0.684 5.684 6 C 0.150 3.850 7 C -0.013 4.013 8 C -0.030 4.030 9 N -0.448 5.448 10 C 0.099 3.901 11 C -0.123 4.123 12 C 0.024 3.976 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.180 3.820 22 N -0.498 5.498 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.353 0.647 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.692 1.509 16.929 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C -0.016 4.016 4 C -0.069 4.069 5 N -0.317 5.317 6 C 0.020 3.980 7 C -0.143 4.143 8 C -0.165 4.165 9 N -0.128 5.128 10 C -0.022 4.022 11 C -0.161 4.161 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.102 4.102 22 N -0.217 5.217 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.172 0.828 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.187 0.813 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -16.715 1.371 16.796 23.736 hybrid contribution 1.214 0.198 -0.253 1.256 sum -15.502 1.569 16.543 22.725 Atomic orbital electron populations 1.22711 0.81022 1.02724 0.99830 1.87870 1.19755 1.28128 1.95399 1.22629 0.93632 0.84870 1.00438 1.21970 0.93065 1.00320 0.91579 1.60561 1.06396 1.30849 1.33873 1.19981 0.87581 0.98623 0.91807 1.20278 1.08155 0.89753 0.96114 1.22433 1.08488 0.95616 0.90013 1.45789 1.47481 1.06873 1.12650 1.22291 0.98111 1.03525 0.78294 1.22044 0.90172 1.01608 1.02263 1.19059 0.96294 0.97286 0.88736 1.21213 0.91580 1.49385 0.93889 0.92571 1.25025 0.98588 0.95162 0.95656 1.69965 1.35427 1.49240 0.98704 0.86509 0.85537 0.77680 0.78143 1.19706 1.20919 1.20925 1.24826 1.04219 0.90720 0.90463 1.70084 1.20100 1.17247 1.14275 0.94311 0.93991 0.89711 0.93040 0.92272 0.94476 0.89635 0.82769 0.94223 0.90210 0.81339 0.89131 0.89366 0.92585 0.92519 0.96242 0.96284 0.92919 0.78279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.02 10.22 -35.23 -0.36 -4.38 16 3 C 0.06 0.52 6.28 37.16 0.23 0.75 16 4 C 0.06 0.55 6.11 -3.82 -0.02 0.53 16 5 N -0.68 -8.01 6.49 -115.05 -0.75 -8.76 16 6 C 0.15 1.84 6.22 -4.98 -0.03 1.81 16 7 C -0.01 -0.20 6.60 -82.85 -0.55 -0.75 16 8 C -0.03 -0.44 11.49 -16.56 -0.19 -0.63 16 9 N -0.45 -6.83 2.75 -118.58 -0.33 -7.15 16 10 C 0.10 1.52 6.15 -4.04 -0.02 1.50 16 11 C -0.12 -2.35 5.48 -26.73 -0.15 -2.49 16 12 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 13 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 C 0.18 2.74 12.56 -90.37 -1.14 1.60 16 22 N -0.50 -8.20 11.25 -10.88 -0.12 -8.32 16 23 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.35 4.68 8.28 -39.29 -0.33 4.35 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.17 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.20 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -31.45 348.88 -8.94 -40.39 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.05 Total: 1.13 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.30 Total: -9.05 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.46 Total: -49.61 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.36 Total: -4.38 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.45 -8.94 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234737510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.054 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds