Wall clock time and date at job start Mon Mar 30 2020 04:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99853 * 2 1 4 4 C 1.53006 * 109.46944 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46975 * 64.99999 * 4 3 2 6 6 C 1.46904 * 110.99845 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47100 * 179.97438 * 6 5 4 8 8 C 1.34675 * 125.98512 * 95.00051 * 7 6 5 9 9 N 1.36879 * 106.81522 * 179.97438 * 8 7 6 10 10 C 1.46499 * 126.39849 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47021 * 89.99861 * 10 9 8 12 12 C 1.53004 * 109.47027 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46961 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00166 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99982 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99838 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00276 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46846 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46646 * 120.00260 * 17 15 13 20 20 H 1.48496 * 109.47563 * 240.00256 * 17 15 13 21 21 C 1.35041 * 107.20828 * 0.02562 * 9 8 7 22 22 N 1.30503 * 108.69928 * 359.97438 * 21 9 8 23 23 H 1.09003 * 109.47021 * 300.00535 * 1 2 3 24 24 H 1.08998 * 109.47512 * 60.00412 * 1 2 3 25 25 H 1.09004 * 109.47019 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47493 * 59.99768 * 3 2 1 27 27 H 1.09004 * 109.47144 * 299.99522 * 3 2 1 28 28 H 1.08997 * 109.47216 * 304.99815 * 4 3 2 29 29 H 1.08998 * 109.46968 * 184.99543 * 4 3 2 30 30 H 1.00903 * 111.00016 * 303.95028 * 5 4 3 31 31 H 1.09002 * 109.47097 * 59.99427 * 6 5 4 32 32 H 1.09000 * 109.46789 * 299.99952 * 6 5 4 33 33 H 1.07999 * 126.59056 * 359.73822 * 8 7 6 34 34 H 1.08996 * 109.47327 * 210.00288 * 10 9 8 35 35 H 1.09002 * 109.46825 * 330.00335 * 10 9 8 36 36 H 1.08996 * 109.47418 * 300.00371 * 11 10 9 37 37 H 1.09002 * 109.46934 * 60.00540 * 11 10 9 38 38 H 1.09005 * 109.47112 * 300.00020 * 12 11 10 39 39 H 1.08996 * 109.47355 * 60.00072 * 12 11 10 40 40 H 0.97006 * 119.99879 * 179.97438 * 16 15 13 41 41 H 1.07997 * 125.65385 * 180.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9768 0.5627 -1.2562 6 6 5.4394 0.4297 -1.2921 7 6 5.8538 -0.2113 -2.5914 8 6 6.2404 0.4380 -3.7062 9 7 6.5267 -0.5186 -4.6424 10 6 6.9871 -0.2831 -6.0131 11 6 8.5162 -0.2356 -6.0364 12 6 8.9971 0.0109 -7.4678 13 6 10.5032 0.0571 -7.4908 14 1 11.0616 -0.0757 -6.5759 15 6 11.1683 0.2688 -8.6799 16 7 10.4883 0.4310 -9.7939 17 14 13.0352 0.3268 -8.7084 18 1 13.5579 0.1183 -7.3340 19 1 13.5500 -0.7427 -9.6009 20 1 13.4818 1.6501 -9.2128 21 6 6.3045 -1.7199 -4.0671 22 7 5.9024 -1.5283 -2.8404 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.8515 0.5682 0.8409 29 1 3.9785 2.1765 0.0888 30 1 3.5293 -0.3311 -1.3938 31 1 5.7682 -0.1921 -0.4594 32 1 5.8960 1.4162 -1.2112 33 1 6.3075 1.5079 -3.8375 34 1 6.6388 -1.0905 -6.6572 35 1 6.5887 0.6658 -6.3723 36 1 8.8645 0.5718 -5.3923 37 1 8.9147 -1.1845 -5.6772 38 1 8.6488 -0.7963 -8.1122 39 1 8.5986 0.9599 -7.8266 40 1 10.9563 0.5803 -10.6304 41 1 6.4381 -2.6801 -4.5429 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234737510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:41 Heat of formation + Delta-G solvation = -21.774446 kcal Electronic energy + Delta-G solvation = -19206.022318 eV Core-core repulsion = 16120.667179 eV Total energy + Delta-G solvation = -3085.355139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.94144 -39.05259 -37.20771 -36.46081 -34.87010 -32.71522 -31.72017 -29.69913 -28.54057 -27.12197 -25.77274 -24.96228 -22.79820 -22.52117 -21.69994 -21.02154 -18.68469 -17.78685 -17.50719 -17.03520 -16.63339 -16.46773 -16.14415 -15.88912 -15.75398 -15.15338 -14.94368 -14.79992 -14.46118 -14.07769 -13.83677 -13.30192 -13.23419 -13.02915 -12.75638 -12.70482 -12.63524 -12.51101 -12.38877 -12.01580 -11.68377 -11.59536 -11.31554 -10.88391 -10.60141 -10.58016 -10.39719 -9.44743 -9.19946 -8.23215 -6.33345 1.19944 1.38430 1.39914 1.52023 1.96941 2.12694 2.39561 2.92592 3.10816 3.40345 3.76091 3.82929 4.04471 4.10956 4.18230 4.27508 4.36590 4.43650 4.44595 4.48082 4.55238 4.59511 4.69506 4.73742 4.80468 4.89385 4.91979 4.93281 5.04099 5.10144 5.43988 5.47563 5.67762 5.80959 5.82211 6.07974 6.19862 6.27252 6.35381 6.40249 6.82709 7.18846 7.36009 8.88174 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.046773 B = 0.002471 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.490699 B =11329.007167 C =11446.827121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.421 6.421 3 C 0.061 3.939 4 C 0.059 3.941 5 N -0.688 5.688 6 C 0.153 3.847 7 C -0.023 4.023 8 C -0.040 4.040 9 N -0.451 5.451 10 C 0.112 3.888 11 C -0.105 4.105 12 C 0.028 3.972 13 C -0.544 4.544 14 H 0.055 0.945 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.961 3.039 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.174 3.826 22 N -0.524 5.524 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.033 0.967 29 H 0.104 0.896 30 H 0.342 0.658 31 H 0.033 0.967 32 H 0.097 0.903 33 H 0.187 0.813 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.004 0.996 39 H 0.002 0.998 40 H 0.264 0.736 41 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 1.992 17.834 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.340 6.340 3 C -0.015 4.015 4 C -0.070 4.070 5 N -0.320 5.320 6 C 0.024 3.976 7 C -0.152 4.152 8 C -0.175 4.175 9 N -0.132 5.132 10 C -0.009 4.009 11 C -0.144 4.144 12 C -0.010 4.010 13 C -0.582 4.582 14 H 0.073 0.927 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.108 4.108 22 N -0.244 5.244 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.122 0.878 30 H 0.159 0.841 31 H 0.051 0.949 32 H 0.116 0.884 33 H 0.204 0.796 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.073 0.927 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -16.771 1.867 17.727 24.474 hybrid contribution 1.180 0.040 -0.501 1.282 sum -15.591 1.907 17.226 23.312 Atomic orbital electron populations 1.22859 0.79674 1.03466 1.00741 1.87832 1.21393 1.29214 1.95599 1.22683 0.93019 0.84480 1.01318 1.22090 0.93798 1.00841 0.90232 1.60597 1.05825 1.30114 1.35424 1.20019 0.88142 0.99142 0.90331 1.20730 1.07818 0.89469 0.97183 1.22817 1.08350 0.96490 0.89866 1.45757 1.47782 1.07130 1.12516 1.22058 0.95236 1.04792 0.78843 1.21738 0.93000 1.01020 0.98623 1.18930 0.94846 0.95708 0.91525 1.21661 0.93482 1.49125 0.93935 0.92719 1.25895 1.03479 0.94814 0.95358 1.70070 1.37357 1.50133 0.99308 0.85464 0.79737 0.77866 0.78381 1.19017 1.20342 1.20325 1.25372 1.03551 0.91584 0.90336 1.70101 1.21030 1.18213 1.15041 0.92809 0.93620 0.89176 0.90911 0.92519 0.94823 0.87829 0.84078 0.94880 0.88447 0.79571 0.87654 0.88378 0.93173 0.92890 0.97802 0.97984 0.92681 0.76022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.42 -8.27 10.22 -148.98 -1.52 -9.79 16 3 C 0.06 0.95 6.28 71.98 0.45 1.41 16 4 C 0.06 1.00 6.11 86.31 0.53 1.53 16 5 N -0.69 -15.49 6.49 -517.92 -3.36 -18.85 16 6 C 0.15 3.61 6.22 85.56 0.53 4.14 16 7 C -0.02 -0.67 6.60 41.39 0.27 -0.40 16 8 C -0.04 -1.13 11.49 83.09 0.95 -0.18 16 9 N -0.45 -13.11 2.75 -529.07 -1.46 -14.57 16 10 C 0.11 3.29 6.15 86.38 0.53 3.82 16 11 C -0.11 -3.96 5.48 30.60 0.17 -3.79 16 12 C 0.03 1.34 4.97 29.85 0.15 1.49 16 13 C -0.54 -29.94 9.11 25.60 0.23 -29.70 16 14 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.93 -54.53 13.29 21.45 0.28 -54.24 16 17 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.17 5.07 12.56 180.26 2.26 7.34 16 22 N -0.52 -16.87 11.25 -188.32 -2.12 -18.99 16 23 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.34 8.98 8.28 -89.69 -0.74 8.24 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.19 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.00 0.18 8.14 -2.38 -0.02 0.17 16 39 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 41 H 0.22 5.08 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -66.63 348.88 1.89 -64.74 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.25 Total: 18.34 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 7.79 Total: -12.11 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -6.65 Total: -106.64 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.52 Total: -9.79 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -66.63 1.89 -64.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234737510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.965 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds