Wall clock time and date at job start Mon Mar 30 2020 04:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.16760 * 2 1 4 4 C 1.53710 * 109.13934 * 119.26925 * 2 1 3 5 5 N 1.45474 * 107.57174 * 64.40930 * 4 2 1 6 6 C 1.46170 * 117.92196 * 183.54646 * 5 4 2 7 7 C 1.54882 * 105.83989 * 207.63766 * 6 5 4 8 8 C 1.55406 * 104.97063 * 3.95690 * 7 6 5 9 9 C 1.48793 * 109.32055 * 63.26860 * 5 4 2 10 10 H 1.08998 * 111.10934 * 53.84571 * 9 5 4 11 11 C 1.52296 * 107.05689 * 291.97775 * 9 5 4 12 12 N 1.46601 * 109.18052 * 240.70949 * 2 1 3 13 13 C 1.46904 * 111.00004 * 59.69424 * 12 2 1 14 14 C 1.50700 * 109.47124 * 170.00074 * 13 12 2 15 15 O 1.21292 * 119.99931 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99956 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99857 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00058 * 0.27796 * 17 16 14 19 19 C 1.38955 * 119.99721 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99625 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 90.00449 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00465 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00295 * 21 19 17 25 25 H 1.09002 * 109.46818 * 179.29086 * 1 2 3 26 26 H 1.09000 * 109.47154 * 299.29177 * 1 2 3 27 27 H 1.08998 * 109.47209 * 59.29364 * 1 2 3 28 28 H 1.09000 * 109.83418 * 183.92349 * 4 2 1 29 29 H 1.08998 * 109.83628 * 304.88673 * 4 2 1 30 30 H 1.08997 * 110.17739 * 326.73425 * 6 5 4 31 31 H 1.09004 * 110.17445 * 88.54844 * 6 5 4 32 32 H 1.09000 * 110.34004 * 122.82586 * 7 6 5 33 33 H 1.09001 * 110.34510 * 244.98023 * 7 6 5 34 34 H 1.09002 * 110.93138 * 140.43974 * 8 7 6 35 35 H 1.08997 * 110.93144 * 264.09860 * 8 7 6 36 36 H 1.09005 * 109.86108 * 303.01949 * 11 9 5 37 37 H 1.08995 * 109.86119 * 181.98648 * 11 9 5 38 38 H 1.08997 * 109.47232 * 49.99674 * 13 12 2 39 39 H 1.09002 * 109.47005 * 290.00173 * 13 12 2 40 40 H 0.96999 * 120.00050 * 0.02562 * 16 14 13 41 41 H 0.97000 * 119.99719 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8879 1.0296 0.0000 4 6 2.0340 -0.7100 1.2667 5 7 1.6121 -2.1000 1.1885 6 6 1.9072 -2.9699 2.3254 7 6 2.0245 -4.4006 1.7438 8 6 1.8741 -4.2229 0.2073 9 6 2.2626 -2.7467 0.0169 10 1 3.3448 -2.6205 0.0496 11 6 1.6660 -2.1118 -1.2322 12 7 2.0117 -0.6774 -1.2076 13 6 1.5310 0.0008 -2.4189 14 6 2.2360 -0.5651 -3.6247 15 8 3.0583 -1.4462 -3.4884 16 7 1.9535 -0.0913 -4.8543 17 6 2.5952 -0.6057 -5.9513 18 1 3.3238 -1.3936 -5.8304 19 6 2.3036 -0.1175 -7.2191 20 7 1.4130 0.8375 -7.3668 21 14 3.1774 -0.8189 -8.7138 22 1 2.4007 -1.9663 -9.2481 23 1 3.2919 0.2306 -9.7580 24 1 4.5344 -1.2787 -8.3234 25 1 -0.3633 -1.0276 -0.0127 26 1 -0.3633 0.5028 0.8963 27 1 -0.3633 0.5248 -0.8836 28 1 3.1217 -0.6556 1.3133 29 1 1.6013 -0.2411 2.1505 30 1 2.8478 -2.6748 2.7904 31 1 1.0970 -2.9252 3.0532 32 1 2.9985 -4.8279 1.9822 33 1 1.2278 -5.0345 2.1332 34 1 2.5601 -4.8782 -0.3295 35 1 0.8450 -4.3981 -0.1062 36 1 0.5826 -2.2317 -1.2272 37 1 2.0871 -2.5790 -2.1223 38 1 1.7386 1.0682 -2.3443 39 1 0.4568 -0.1543 -2.5200 40 1 1.2967 0.6142 -4.9632 41 1 1.2097 1.1784 -8.2518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247530255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:59 Heat of formation + Delta-G solvation = -16.037059 kcal Electronic energy + Delta-G solvation = -21322.874805 eV Core-core repulsion = 18237.768458 eV Total energy + Delta-G solvation = -3085.106348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19022 -38.17758 -36.36310 -33.92225 -32.66438 -31.24407 -30.43536 -29.55852 -26.62140 -26.01105 -24.49288 -23.22207 -21.33379 -20.78358 -19.19092 -18.68704 -17.77850 -16.34200 -15.67597 -15.63537 -15.14161 -14.74858 -14.46067 -14.26922 -14.00528 -13.68543 -13.47050 -13.00277 -12.73510 -12.48381 -12.17104 -12.05852 -11.66107 -11.47140 -11.42955 -11.33454 -11.05980 -11.01999 -10.74367 -10.53354 -10.45385 -10.36311 -10.27674 -10.17561 -9.42596 -8.40203 -8.20896 -7.92962 -7.65924 -6.38315 -3.78854 3.19933 3.28377 3.34349 3.93783 3.99658 4.05948 4.26959 4.61804 4.73218 4.93957 5.04299 5.12988 5.26468 5.29926 5.38968 5.41649 5.51797 5.57324 5.65326 5.72102 5.75013 5.81748 5.86489 5.92564 5.96452 6.01707 6.11575 6.13942 6.15926 6.26092 6.34590 6.54818 6.60565 6.99518 7.26784 7.45777 7.57551 7.60238 8.10709 8.66169 9.21936 9.58953 10.11090 10.79557 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.004424 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.495648 B = 6328.298345 C = 6925.015359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 H 0.081 0.919 4 C 0.072 3.928 5 N -0.543 5.543 6 C 0.052 3.948 7 C -0.126 4.126 8 C -0.114 4.114 9 C 0.074 3.926 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.520 5.520 13 C 0.049 3.951 14 C 0.445 3.555 15 O -0.578 6.578 16 N -0.565 5.565 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.270 1.270 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.392 0.608 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -3.705 16.645 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.021 4.021 3 H 0.099 0.901 4 C -0.057 4.057 5 N -0.268 5.268 6 C -0.076 4.076 7 C -0.164 4.164 8 C -0.153 4.153 9 C -0.034 4.034 10 H 0.080 0.920 11 C -0.059 4.059 12 N -0.244 5.244 13 C -0.082 4.082 14 C 0.230 3.770 15 O -0.462 6.462 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.194 1.194 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.225 0.775 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.124 -4.108 16.549 17.183 hybrid contribution -0.086 0.292 -0.671 0.737 sum -2.210 -3.815 15.878 16.479 Atomic orbital electron populations 1.22385 0.97285 1.02880 1.01166 1.21736 0.93300 0.97429 0.89643 0.90116 1.21948 0.98058 0.88398 0.97269 1.62744 1.58407 1.01657 1.04017 1.22425 0.99270 0.92450 0.93405 1.22638 1.01654 0.96145 0.95994 1.22317 1.02233 0.95575 0.95161 1.22598 0.97257 0.92894 0.90670 0.91965 1.22238 0.97685 0.87538 0.98461 1.61376 1.60352 1.02476 1.00183 1.21793 0.97346 0.98949 0.90089 1.19796 0.86729 0.86538 0.83914 1.90460 1.36942 1.33407 1.85440 1.41871 1.38096 1.35347 1.04863 1.19693 1.20390 1.18640 0.83982 0.87951 1.25247 0.97088 0.96521 0.99091 1.69615 1.32951 1.27422 1.24433 0.85873 0.79735 0.78289 0.80481 1.20463 1.20970 1.19434 0.91290 0.92891 0.92944 0.94296 0.90769 0.94732 0.90938 0.91668 0.91244 0.90878 0.90751 0.94658 0.87364 0.89608 0.93273 0.77518 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.39 37.16 0.31 -1.97 16 2 C 0.09 1.22 2.94 -67.50 -0.20 1.03 16 3 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 4 C 0.07 0.91 5.45 -4.22 -0.02 0.89 16 5 N -0.54 -7.03 3.98 -225.14 -0.90 -7.92 16 6 C 0.05 0.57 6.88 -3.23 -0.02 0.54 16 7 C -0.13 -1.27 6.99 -24.46 -0.17 -1.44 16 8 C -0.11 -1.39 6.63 -25.02 -0.17 -1.56 16 9 C 0.07 1.08 2.76 -66.59 -0.18 0.89 16 10 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 11 C 0.07 1.17 4.51 -3.82 -0.02 1.15 16 12 N -0.52 -9.00 4.32 -227.75 -0.98 -9.98 16 13 C 0.05 0.91 4.74 -4.97 -0.02 0.89 16 14 C 0.44 10.57 7.49 -10.99 -0.08 10.49 16 15 O -0.58 -15.51 13.73 5.55 0.08 -15.43 16 16 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 17 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.71 13.05 55.50 0.72 -23.99 16 21 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H 0.07 0.97 6.22 -51.93 -0.32 0.65 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.68 6.59 -51.93 -0.34 0.34 16 28 H 0.04 0.52 8.08 -51.93 -0.42 0.11 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.04 0.60 6.71 -51.93 -0.35 0.25 16 37 H 0.11 2.23 5.70 -51.93 -0.30 1.94 16 38 H 0.09 1.45 8.05 -51.93 -0.42 1.03 16 39 H 0.05 0.85 6.84 -51.93 -0.36 0.50 16 40 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 315.95 15.07 4.76 4.76 Total: -1.00 -30.04 315.95 -8.77 -38.81 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -6.55 Total: 9.16 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.82 Total: 2.94 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.21 Total: -56.37 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: 0.08 Total: -15.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.04 -8.77 -38.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247530255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.774 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds