Wall clock time and date at job start Mon Mar 30 2020 04:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.16760 * 2 1 4 4 C 1.53710 * 109.13934 * 119.26925 * 2 1 3 5 5 N 1.45474 * 107.57174 * 64.40930 * 4 2 1 6 6 C 1.46170 * 117.92196 * 183.54646 * 5 4 2 7 7 C 1.54882 * 105.83989 * 207.63766 * 6 5 4 8 8 C 1.55406 * 104.97063 * 3.95690 * 7 6 5 9 9 C 1.48793 * 109.32055 * 63.26860 * 5 4 2 10 10 H 1.08998 * 111.10934 * 53.84571 * 9 5 4 11 11 C 1.52296 * 107.05689 * 291.97775 * 9 5 4 12 12 N 1.46601 * 109.18052 * 240.70949 * 2 1 3 13 13 C 1.46904 * 111.00004 * 59.69424 * 12 2 1 14 14 C 1.50700 * 109.47124 * 170.00074 * 13 12 2 15 15 O 1.21292 * 119.99931 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99956 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99857 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00058 * 0.27796 * 17 16 14 19 19 C 1.38955 * 119.99721 * 179.97438 * 17 16 14 20 20 N 1.31411 * 120.00276 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99625 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46986 * 90.00449 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00465 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00295 * 21 19 17 25 25 H 1.09002 * 109.46818 * 179.29086 * 1 2 3 26 26 H 1.09000 * 109.47154 * 299.29177 * 1 2 3 27 27 H 1.08998 * 109.47209 * 59.29364 * 1 2 3 28 28 H 1.09000 * 109.83418 * 183.92349 * 4 2 1 29 29 H 1.08998 * 109.83628 * 304.88673 * 4 2 1 30 30 H 1.08997 * 110.17739 * 326.73425 * 6 5 4 31 31 H 1.09004 * 110.17445 * 88.54844 * 6 5 4 32 32 H 1.09000 * 110.34004 * 122.82586 * 7 6 5 33 33 H 1.09001 * 110.34510 * 244.98023 * 7 6 5 34 34 H 1.09002 * 110.93138 * 140.43974 * 8 7 6 35 35 H 1.08997 * 110.93144 * 264.09860 * 8 7 6 36 36 H 1.09005 * 109.86108 * 303.01949 * 11 9 5 37 37 H 1.08995 * 109.86119 * 181.98648 * 11 9 5 38 38 H 1.08997 * 109.47232 * 49.99674 * 13 12 2 39 39 H 1.09002 * 109.47005 * 290.00173 * 13 12 2 40 40 H 0.96999 * 120.00050 * 0.02562 * 16 14 13 41 41 H 0.97000 * 119.99719 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8879 1.0296 0.0000 4 6 2.0340 -0.7100 1.2667 5 7 1.6121 -2.1000 1.1885 6 6 1.9072 -2.9699 2.3254 7 6 2.0245 -4.4006 1.7438 8 6 1.8741 -4.2229 0.2073 9 6 2.2626 -2.7467 0.0169 10 1 3.3448 -2.6205 0.0496 11 6 1.6660 -2.1118 -1.2322 12 7 2.0117 -0.6774 -1.2076 13 6 1.5310 0.0008 -2.4189 14 6 2.2360 -0.5651 -3.6247 15 8 3.0583 -1.4462 -3.4884 16 7 1.9535 -0.0913 -4.8543 17 6 2.5952 -0.6057 -5.9513 18 1 3.3238 -1.3936 -5.8304 19 6 2.3036 -0.1175 -7.2191 20 7 1.4130 0.8375 -7.3668 21 14 3.1774 -0.8189 -8.7138 22 1 2.4007 -1.9663 -9.2481 23 1 3.2919 0.2306 -9.7580 24 1 4.5344 -1.2787 -8.3234 25 1 -0.3633 -1.0276 -0.0127 26 1 -0.3633 0.5028 0.8963 27 1 -0.3633 0.5248 -0.8836 28 1 3.1217 -0.6556 1.3133 29 1 1.6013 -0.2411 2.1505 30 1 2.8478 -2.6748 2.7904 31 1 1.0970 -2.9252 3.0532 32 1 2.9985 -4.8279 1.9822 33 1 1.2278 -5.0345 2.1332 34 1 2.5601 -4.8782 -0.3295 35 1 0.8450 -4.3981 -0.1062 36 1 0.5826 -2.2317 -1.2272 37 1 2.0871 -2.5790 -2.1223 38 1 1.7386 1.0682 -2.3443 39 1 0.4568 -0.1543 -2.5200 40 1 1.2967 0.6142 -4.9632 41 1 1.2097 1.1784 -8.2518 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247530255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:58 Heat of formation + Delta-G solvation = -37.825446 kcal Electronic energy + Delta-G solvation = -21323.819621 eV Core-core repulsion = 18237.768458 eV Total energy + Delta-G solvation = -3086.051163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38241 -39.92681 -37.63779 -35.92240 -33.85140 -33.27525 -31.54870 -30.75250 -28.16098 -27.03113 -26.24482 -24.55755 -22.42954 -21.75519 -20.98077 -20.01357 -19.70855 -17.90479 -16.99687 -16.67014 -16.61759 -16.41580 -15.84688 -15.77477 -15.40114 -15.15412 -14.85329 -14.43576 -13.94922 -13.70300 -13.49366 -13.43075 -13.20265 -12.97559 -12.67121 -12.62872 -12.41009 -12.34916 -12.12080 -12.03933 -11.81155 -11.71958 -11.49671 -11.45274 -11.33737 -10.23796 -9.98294 -9.28984 -9.05147 -8.45065 -5.93576 1.38460 1.41944 1.54833 2.06743 2.29209 2.74038 3.02776 3.21675 3.36524 3.67057 3.79650 3.99010 4.11059 4.21875 4.25027 4.27771 4.36066 4.45558 4.48867 4.57712 4.65866 4.70385 4.71553 4.74303 4.88199 4.97805 5.00208 5.02220 5.07824 5.10630 5.27332 5.31868 5.42276 5.47120 5.89295 5.94166 6.09382 6.34456 6.38316 6.62685 7.14664 7.58145 8.14232 8.72491 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.004424 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.495648 B = 6328.298345 C = 6925.015359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.084 3.916 3 H 0.092 0.908 4 C 0.074 3.926 5 N -0.543 5.543 6 C 0.051 3.949 7 C -0.119 4.119 8 C -0.115 4.115 9 C 0.075 3.925 10 H 0.039 0.961 11 C 0.076 3.924 12 N -0.538 5.538 13 C 0.063 3.937 14 C 0.442 3.558 15 O -0.613 6.613 16 N -0.575 5.575 17 C -0.331 4.331 18 H 0.079 0.921 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.273 1.273 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.395 0.605 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 -3.457 18.095 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 H 0.110 0.890 4 C -0.055 4.055 5 N -0.269 5.269 6 C -0.077 4.077 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.033 4.033 10 H 0.057 0.943 11 C -0.052 4.052 12 N -0.262 5.262 13 C -0.068 4.068 14 C 0.229 3.771 15 O -0.499 6.499 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.198 1.198 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.229 0.771 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.895 -3.845 18.025 18.657 hybrid contribution 0.150 0.222 -1.068 1.101 sum -2.745 -3.622 16.957 17.556 Atomic orbital electron populations 1.22277 0.96068 1.02219 1.02166 1.21894 0.94266 0.97745 0.88473 0.88989 1.21985 0.97569 0.88390 0.97539 1.62746 1.57995 1.01991 1.04134 1.22544 1.00171 0.92149 0.92810 1.22632 1.02945 0.96250 0.93829 1.22320 1.01987 0.93820 0.97192 1.22441 0.95761 0.94596 0.90512 0.94276 1.22010 0.97390 0.87731 0.98065 1.61350 1.61287 1.02622 1.00962 1.21648 0.97249 0.99595 0.88313 1.20776 0.85986 0.85511 0.84821 1.90444 1.38488 1.34818 1.86153 1.41934 1.38394 1.35736 1.05132 1.19653 1.21392 1.19389 0.85635 0.90345 1.26023 0.97481 0.96540 1.01187 1.69677 1.33380 1.27788 1.25432 0.84938 0.78342 0.78026 0.77089 1.19630 1.19552 1.19815 0.92654 0.90603 0.93243 0.95402 0.88027 0.94311 0.89188 0.90749 0.89435 0.91078 0.90880 0.94590 0.91596 0.87571 0.91807 0.77112 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 8.39 71.98 0.60 -3.31 16 2 C 0.08 2.19 2.94 45.21 0.13 2.33 16 3 H 0.09 2.19 8.11 -2.39 -0.02 2.17 16 4 C 0.07 1.71 5.45 86.81 0.47 2.18 16 5 N -0.54 -13.10 3.98 -866.20 -3.44 -16.54 16 6 C 0.05 0.96 6.88 87.08 0.60 1.56 16 7 C -0.12 -2.12 6.99 32.06 0.22 -1.89 16 8 C -0.11 -2.73 6.63 31.70 0.21 -2.52 16 9 C 0.08 2.21 2.76 44.59 0.12 2.33 16 10 H 0.04 1.32 8.09 -2.39 -0.02 1.30 16 11 C 0.08 2.67 4.51 85.94 0.39 3.06 16 12 N -0.54 -18.56 4.32 -874.46 -3.78 -22.33 16 13 C 0.06 2.31 4.74 85.56 0.41 2.72 16 14 C 0.44 21.63 7.49 87.66 0.66 22.29 16 15 O -0.61 -34.42 13.73 -3.07 -0.04 -34.46 16 16 N -0.57 -30.14 5.29 -306.98 -1.62 -31.76 16 17 C -0.33 -19.07 9.68 84.04 0.81 -18.26 16 18 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 19 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 20 N -0.92 -50.36 13.05 21.66 0.28 -50.07 16 21 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 25 H 0.05 1.45 6.22 -2.39 -0.01 1.43 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.17 6.59 -2.39 -0.02 1.15 16 28 H 0.03 0.71 8.08 -2.39 -0.02 0.69 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.04 0.71 8.06 -2.39 -0.02 0.69 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.07 1.75 8.11 -2.39 -0.02 1.73 16 36 H 0.04 1.24 6.71 -2.38 -0.02 1.22 16 37 H 0.07 2.89 5.70 -2.39 -0.01 2.87 16 38 H 0.11 3.46 8.05 -2.39 -0.02 3.44 16 39 H 0.06 2.17 6.84 -2.39 -0.02 2.15 16 40 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 41 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -66.08 315.95 -1.19 -67.27 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.29 Total: 32.19 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.10 Total: 10.25 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -8.56 Total: -120.71 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.04 Total: -34.46 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -66.08 -1.19 -67.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247530255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.446 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds