Wall clock time and date at job start Mon Mar 30 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.51594 * 2 1 4 4 C 1.52877 * 109.62442 * 240.00525 * 2 1 3 5 5 N 1.47157 * 108.60907 * 187.89570 * 4 2 1 6 6 C 1.37478 * 120.98225 * 230.50143 * 5 4 2 7 7 N 1.37488 * 119.99918 * 185.56554 * 6 5 4 8 8 N 1.30345 * 120.00088 * 5.56195 * 6 5 4 9 9 C 1.46505 * 119.99652 * 186.60780 * 8 6 5 10 10 C 1.53005 * 109.46766 * 246.36753 * 9 8 6 11 11 C 1.50699 * 115.54984 * 306.20923 * 10 9 8 12 12 H 1.07999 * 119.99836 * 144.38453 * 11 10 9 13 13 C 1.37871 * 120.00202 * 324.37589 * 11 10 9 14 14 N 1.31519 * 119.99937 * 3.47531 * 13 11 10 15 15 Si 1.86800 * 120.00226 * 183.46688 * 13 11 10 16 16 H 1.48499 * 109.47007 * 90.00212 * 15 13 11 17 17 H 1.48497 * 109.47197 * 210.00370 * 15 13 11 18 18 H 1.48500 * 109.47015 * 330.00246 * 15 13 11 19 19 C 1.53004 * 117.49508 * 160.53783 * 10 9 8 20 20 C 1.52999 * 117.49764 * 91.88207 * 10 9 8 21 21 C 1.47153 * 118.03242 * 50.23006 * 5 4 2 22 22 C 1.53298 * 108.38283 * 309.71281 * 21 5 4 23 23 O 1.42963 * 109.22189 * 52.30761 * 22 21 5 24 24 H 1.09003 * 109.46880 * 299.89857 * 1 2 3 25 25 H 1.08994 * 109.47378 * 59.90322 * 1 2 3 26 26 H 1.09004 * 109.47413 * 179.90127 * 1 2 3 27 27 H 1.09002 * 109.61747 * 68.08045 * 4 2 1 28 28 H 1.08996 * 109.52628 * 307.65968 * 4 2 1 29 29 H 0.96998 * 119.99958 * 355.15272 * 7 6 5 30 30 H 0.96998 * 120.00015 * 174.88178 * 7 6 5 31 31 H 1.08996 * 109.47316 * 6.36579 * 9 8 6 32 32 H 1.09001 * 109.46937 * 126.37034 * 9 8 6 33 33 H 0.97005 * 119.99935 * 185.00647 * 14 13 11 34 34 H 1.08991 * 117.49852 * 0.02562 * 19 10 9 35 35 H 1.08997 * 117.49705 * 145.01759 * 19 10 9 36 36 H 1.09000 * 117.49566 * 214.97879 * 20 10 9 37 37 H 1.09002 * 117.49931 * 359.97438 * 20 10 9 38 38 H 1.09002 * 109.68479 * 69.43979 * 21 5 4 39 39 H 1.08997 * 109.68037 * 189.99277 * 21 5 4 40 40 H 1.09000 * 109.51139 * 172.22636 * 22 21 5 41 41 H 1.08995 * 109.51486 * 292.38202 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0434 -0.7199 -1.2471 5 7 3.5023 -0.8750 -1.1326 6 6 4.3370 -0.4943 -2.1565 7 7 5.6850 -0.7525 -2.0765 8 7 3.8503 0.1114 -3.2031 9 6 4.7114 0.3876 -4.3558 10 6 4.8925 1.8994 -4.5064 11 6 3.6194 2.7026 -4.5777 12 1 3.5736 3.6830 -4.1270 13 6 2.5134 2.1861 -5.2185 14 7 2.5470 0.9658 -5.7077 15 14 0.9668 3.2194 -5.3916 16 1 1.0288 3.9950 -6.6564 17 1 -0.2225 2.3305 -5.4138 18 1 0.8648 4.1541 -4.2422 19 6 6.0842 2.3893 -5.3315 20 6 6.0938 2.5399 -3.8082 21 6 4.0416 -1.4440 0.1127 22 6 3.4312 -0.6838 1.2957 23 8 2.0075 -0.6758 1.1658 24 1 -0.3633 0.5123 0.8909 25 1 -0.3634 0.5153 -0.8890 26 1 -0.3634 -1.0277 -0.0018 27 1 1.8053 -0.1316 -2.1333 28 1 1.5746 -1.7011 -1.3203 29 1 6.0577 -1.1392 -1.2688 30 1 6.2628 -0.5515 -2.8293 31 1 5.6834 -0.0815 -4.2039 32 1 4.2507 -0.0148 -5.2580 33 1 1.7965 0.6283 -6.2214 34 1 6.7388 1.6347 -5.7673 35 1 5.9475 3.2928 -5.9256 36 1 5.9635 3.5425 -3.4008 37 1 6.7549 1.8844 -3.2413 38 1 3.7774 -2.4994 0.1787 39 1 5.1260 -1.3350 0.1266 40 1 3.7089 -1.1766 2.2274 41 1 3.8021 0.3411 1.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262454787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:21 Heat of formation + Delta-G solvation = 39.802089 kcal Electronic energy + Delta-G solvation = -21620.563886 eV Core-core repulsion = 18537.878906 eV Total energy + Delta-G solvation = -3082.684980 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48024 -37.44505 -36.07107 -33.35979 -32.83630 -31.92869 -30.64955 -28.54802 -26.08815 -25.42732 -24.67183 -22.60994 -21.10376 -20.83986 -19.13253 -18.31091 -17.33611 -16.56550 -16.13935 -15.80978 -14.96771 -14.66100 -14.57853 -14.43306 -13.97966 -13.65218 -13.01085 -12.62254 -12.55617 -12.30506 -12.00939 -11.77449 -11.53026 -11.25458 -11.15578 -11.02894 -10.86607 -10.53904 -10.38886 -10.33587 -10.00554 -9.74194 -9.41646 -8.77840 -8.63627 -8.17530 -7.99058 -7.73734 -6.62637 -5.67479 -3.80365 3.25551 3.39551 3.46193 3.49845 3.86452 3.99591 4.55751 4.57397 4.92021 5.11412 5.12429 5.23990 5.28100 5.39250 5.46469 5.62010 5.73929 5.82555 5.88516 5.98740 6.12775 6.21428 6.24632 6.31195 6.40734 6.56762 6.72299 6.77204 6.94793 7.01379 7.27036 7.35318 7.38040 7.46326 7.57066 7.79025 7.96506 8.24343 8.62961 8.78324 9.11382 9.77239 9.79309 11.25391 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.007638 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.472542 B = 3664.783711 C = 4854.984411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.063 0.937 4 C 0.117 3.883 5 N -0.620 5.620 6 C 0.569 3.431 7 N -0.906 5.906 8 N -0.567 5.567 9 C 0.130 3.870 10 C 0.067 3.933 11 C -0.475 4.475 12 H 0.049 0.951 13 C 0.085 3.915 14 N -0.861 5.861 15 Si 0.887 3.113 16 H -0.285 1.285 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.214 4.214 20 C -0.216 4.216 21 C 0.097 3.903 22 C 0.049 3.951 23 O -0.384 6.384 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.118 0.882 28 H 0.055 0.945 29 H 0.374 0.626 30 H 0.405 0.595 31 H -0.024 1.024 32 H 0.116 0.884 33 H 0.253 0.747 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -6.286 11.493 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 H 0.081 0.919 4 C -0.007 4.007 5 N -0.346 5.346 6 C 0.204 3.796 7 N -0.468 5.468 8 N -0.301 5.301 9 C 0.000 4.000 10 C 0.065 3.935 11 C -0.513 4.513 12 H 0.068 0.932 13 C -0.118 4.118 14 N -0.498 5.498 15 Si 0.715 3.285 16 H -0.212 1.212 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.253 4.253 20 C -0.254 4.254 21 C -0.028 4.028 22 C -0.029 4.029 23 O -0.304 6.304 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.136 0.864 28 H 0.073 0.927 29 H 0.202 0.798 30 H 0.239 0.761 31 H -0.006 1.006 32 H 0.133 0.867 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.570 -6.157 11.200 12.793 hybrid contribution 0.931 0.484 -0.111 1.056 sum 1.502 -5.673 11.089 12.546 Atomic orbital electron populations 1.21700 0.92706 1.02755 1.02695 1.22518 0.95107 0.95858 0.85310 0.91864 1.21958 0.78753 1.00476 0.99520 1.45495 1.04706 1.70265 1.14172 1.18923 0.79077 0.91773 0.89851 1.43193 1.07313 1.75676 1.20626 1.72526 1.34325 1.22153 1.01131 1.21477 0.89522 0.94089 0.94908 1.19132 0.87483 0.92346 0.94491 1.20267 0.94449 1.00814 1.35748 0.93239 1.24780 0.97463 0.94105 0.95456 1.69870 1.30972 1.14260 1.34703 0.86696 0.83521 0.80159 0.78086 1.21154 1.21263 1.20211 1.23018 1.07411 1.02568 0.92274 1.22849 1.06942 1.01229 0.94360 1.22000 0.98494 0.97486 0.84861 1.22918 0.81976 1.00090 0.97894 1.87887 1.20434 1.77807 1.44225 0.92011 0.90467 0.91925 0.86358 0.92718 0.79822 0.76100 1.00623 0.86668 0.93596 0.92070 0.90657 0.91280 0.92254 0.91827 0.90373 0.88521 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.57 37.15 0.36 -1.44 16 2 C 0.07 1.06 3.38 -26.80 -0.09 0.97 16 3 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.98 5.94 -3.75 -0.02 1.96 16 5 N -0.62 -10.39 3.10 -174.27 -0.54 -10.93 16 6 C 0.57 11.10 8.39 -320.09 -2.69 8.41 16 7 N -0.91 -14.44 8.78 30.14 0.26 -14.18 16 8 N -0.57 -13.41 8.55 -61.77 -0.53 -13.94 16 9 C 0.13 3.19 5.19 -4.04 -0.02 3.17 16 10 C 0.07 1.71 2.17 -155.66 -0.34 1.37 16 11 C -0.48 -13.48 8.73 -34.44 -0.30 -13.78 16 12 H 0.05 1.44 7.82 -52.49 -0.41 1.02 16 13 C 0.09 2.38 5.30 -17.82 -0.09 2.28 16 14 N -0.86 -24.20 10.16 55.43 0.56 -23.64 16 15 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.21 -5.01 9.96 -26.69 -0.27 -5.28 16 20 C -0.22 -4.97 9.92 -26.70 -0.26 -5.23 16 21 C 0.10 1.20 6.60 -3.53 -0.02 1.18 16 22 C 0.05 0.59 6.98 37.31 0.26 0.85 16 23 O -0.38 -5.51 10.39 -35.23 -0.37 -5.87 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.12 2.43 6.98 -51.93 -0.36 2.07 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.37 4.68 6.53 -40.82 -0.27 4.41 16 30 H 0.41 6.70 6.22 -40.82 -0.25 6.45 16 31 H -0.02 -0.53 5.42 -51.93 -0.28 -0.81 16 32 H 0.12 3.18 5.96 -51.93 -0.31 2.87 16 33 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.07 1.78 8.14 -51.93 -0.42 1.35 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.82 5.86 -51.93 -0.30 0.52 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -30.78 324.78 -10.62 -41.40 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.40 Total: 11.14 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.49 Total: -5.53 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.24 Total: -62.69 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.37 Total: -5.87 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.78 -10.62 -41.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262454787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.203 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds