Wall clock time and date at job start Mon Mar 30 2020 04:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.51594 * 2 1 4 4 C 1.52877 * 109.62442 * 240.00525 * 2 1 3 5 5 N 1.47157 * 108.60907 * 187.89570 * 4 2 1 6 6 C 1.37478 * 120.98225 * 230.50143 * 5 4 2 7 7 N 1.37488 * 119.99918 * 185.56554 * 6 5 4 8 8 N 1.30345 * 120.00088 * 5.56195 * 6 5 4 9 9 C 1.46505 * 119.99652 * 186.60780 * 8 6 5 10 10 C 1.53005 * 109.46766 * 246.36753 * 9 8 6 11 11 C 1.50699 * 115.54984 * 306.20923 * 10 9 8 12 12 H 1.07999 * 119.99836 * 144.38453 * 11 10 9 13 13 C 1.37871 * 120.00202 * 324.37589 * 11 10 9 14 14 N 1.31519 * 119.99937 * 3.47531 * 13 11 10 15 15 Si 1.86800 * 120.00226 * 183.46688 * 13 11 10 16 16 H 1.48499 * 109.47007 * 90.00212 * 15 13 11 17 17 H 1.48497 * 109.47197 * 210.00370 * 15 13 11 18 18 H 1.48500 * 109.47015 * 330.00246 * 15 13 11 19 19 C 1.53004 * 117.49508 * 160.53783 * 10 9 8 20 20 C 1.52999 * 117.49764 * 91.88207 * 10 9 8 21 21 C 1.47153 * 118.03242 * 50.23006 * 5 4 2 22 22 C 1.53298 * 108.38283 * 309.71281 * 21 5 4 23 23 O 1.42963 * 109.22189 * 52.30761 * 22 21 5 24 24 H 1.09003 * 109.46880 * 299.89857 * 1 2 3 25 25 H 1.08994 * 109.47378 * 59.90322 * 1 2 3 26 26 H 1.09004 * 109.47413 * 179.90127 * 1 2 3 27 27 H 1.09002 * 109.61747 * 68.08045 * 4 2 1 28 28 H 1.08996 * 109.52628 * 307.65968 * 4 2 1 29 29 H 0.96998 * 119.99958 * 355.15272 * 7 6 5 30 30 H 0.96998 * 120.00015 * 174.88178 * 7 6 5 31 31 H 1.08996 * 109.47316 * 6.36579 * 9 8 6 32 32 H 1.09001 * 109.46937 * 126.37034 * 9 8 6 33 33 H 0.97005 * 119.99935 * 185.00647 * 14 13 11 34 34 H 1.08991 * 117.49852 * 0.02562 * 19 10 9 35 35 H 1.08997 * 117.49705 * 145.01759 * 19 10 9 36 36 H 1.09000 * 117.49566 * 214.97879 * 20 10 9 37 37 H 1.09002 * 117.49931 * 359.97438 * 20 10 9 38 38 H 1.09002 * 109.68479 * 69.43979 * 21 5 4 39 39 H 1.08997 * 109.68037 * 189.99277 * 21 5 4 40 40 H 1.09000 * 109.51139 * 172.22636 * 22 21 5 41 41 H 1.08995 * 109.51486 * 292.38202 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0434 -0.7199 -1.2471 5 7 3.5023 -0.8750 -1.1326 6 6 4.3370 -0.4943 -2.1565 7 7 5.6850 -0.7525 -2.0765 8 7 3.8503 0.1114 -3.2031 9 6 4.7114 0.3876 -4.3558 10 6 4.8925 1.8994 -4.5064 11 6 3.6194 2.7026 -4.5777 12 1 3.5736 3.6830 -4.1270 13 6 2.5134 2.1861 -5.2185 14 7 2.5470 0.9658 -5.7077 15 14 0.9668 3.2194 -5.3916 16 1 1.0288 3.9950 -6.6564 17 1 -0.2225 2.3305 -5.4138 18 1 0.8648 4.1541 -4.2422 19 6 6.0842 2.3893 -5.3315 20 6 6.0938 2.5399 -3.8082 21 6 4.0416 -1.4440 0.1127 22 6 3.4312 -0.6838 1.2957 23 8 2.0075 -0.6758 1.1658 24 1 -0.3633 0.5123 0.8909 25 1 -0.3634 0.5153 -0.8890 26 1 -0.3634 -1.0277 -0.0018 27 1 1.8053 -0.1316 -2.1333 28 1 1.5746 -1.7011 -1.3203 29 1 6.0577 -1.1392 -1.2688 30 1 6.2628 -0.5515 -2.8293 31 1 5.6834 -0.0815 -4.2039 32 1 4.2507 -0.0148 -5.2580 33 1 1.7965 0.6283 -6.2214 34 1 6.7388 1.6347 -5.7673 35 1 5.9475 3.2928 -5.9256 36 1 5.9635 3.5425 -3.4008 37 1 6.7549 1.8844 -3.2413 38 1 3.7774 -2.4994 0.1787 39 1 5.1260 -1.3350 0.1266 40 1 3.7089 -1.1766 2.2274 41 1 3.8021 0.3411 1.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262454787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:21 Heat of formation + Delta-G solvation = 21.290198 kcal Electronic energy + Delta-G solvation = -21621.366622 eV Core-core repulsion = 18537.878906 eV Total energy + Delta-G solvation = -3083.487716 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70198 -39.02378 -37.71416 -34.71869 -34.04684 -33.93344 -32.15337 -29.73423 -27.63411 -27.27661 -26.22786 -23.79466 -22.92873 -22.12421 -20.87018 -19.89420 -18.69557 -18.13257 -17.62320 -17.25246 -16.51962 -16.20126 -15.81617 -15.74642 -15.42754 -15.27333 -14.78407 -14.24304 -13.92356 -13.61761 -13.27914 -13.21940 -12.89436 -12.87024 -12.76483 -12.58053 -12.42402 -12.26169 -12.10274 -11.97260 -11.49721 -11.33703 -10.93649 -10.76204 -10.59014 -9.96772 -9.49851 -9.36866 -8.23076 -7.71728 -5.95418 1.42845 1.44788 1.53307 1.94151 2.44872 2.52939 2.81288 3.19186 3.31905 3.75195 3.82241 4.05836 4.08928 4.14841 4.24280 4.38925 4.41889 4.55546 4.61596 4.72968 4.75002 4.83896 4.88141 4.92874 4.93969 4.98517 5.07484 5.15343 5.21952 5.33335 5.52885 5.65039 5.76427 6.02498 6.10232 6.21216 6.21835 6.46654 6.57352 7.00324 7.43397 7.65475 8.22252 9.13947 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.007638 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.472542 B = 3664.783711 C = 4854.984411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.079 3.921 3 H 0.042 0.958 4 C 0.119 3.881 5 N -0.623 5.623 6 C 0.577 3.423 7 N -0.891 5.891 8 N -0.623 5.623 9 C 0.146 3.854 10 C 0.033 3.967 11 C -0.499 4.499 12 H 0.029 0.971 13 C 0.048 3.952 14 N -0.873 5.873 15 Si 0.939 3.061 16 H -0.280 1.280 17 H -0.282 1.282 18 H -0.280 1.280 19 C -0.208 4.208 20 C -0.197 4.197 21 C 0.093 3.907 22 C 0.046 3.954 23 O -0.388 6.388 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.394 0.606 30 H 0.405 0.595 31 H -0.006 1.006 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.468 -7.272 13.401 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.020 3.980 3 H 0.060 0.940 4 C -0.005 4.005 5 N -0.349 5.349 6 C 0.212 3.788 7 N -0.453 5.453 8 N -0.361 5.361 9 C 0.016 3.984 10 C 0.032 3.968 11 C -0.536 4.536 12 H 0.048 0.952 13 C -0.154 4.154 14 N -0.510 5.510 15 Si 0.766 3.234 16 H -0.206 1.206 17 H -0.207 1.207 18 H -0.205 1.205 19 C -0.247 4.247 20 C -0.234 4.234 21 C -0.031 4.031 22 C -0.031 4.031 23 O -0.307 6.307 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.238 0.762 31 H 0.012 0.988 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.153 0.847 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.303 -7.169 13.164 15.046 hybrid contribution 0.778 0.737 -0.593 1.225 sum 2.081 -6.432 12.571 14.273 Atomic orbital electron populations 1.21683 0.91091 1.03601 1.03077 1.22350 0.96393 0.94368 0.84841 0.94019 1.21844 0.79414 1.00363 0.98925 1.45777 1.04468 1.69727 1.14953 1.19088 0.80403 0.89870 0.89473 1.42991 1.05941 1.74942 1.21466 1.72468 1.35165 1.25939 1.02483 1.21035 0.90054 0.92998 0.94348 1.19282 0.87366 0.93268 0.96881 1.20423 0.96424 1.00468 1.36300 0.95245 1.25341 0.99655 0.95066 0.95338 1.70057 1.31244 1.14937 1.34761 0.85880 0.80758 0.78866 0.77878 1.20581 1.20735 1.20509 1.23000 1.06473 1.02509 0.92691 1.22798 1.05493 1.00919 0.94235 1.22321 0.99834 0.98084 0.82817 1.23152 0.80613 1.00064 0.99285 1.87889 1.21997 1.77457 1.43393 0.90682 0.91042 0.90825 0.90419 0.91867 0.77485 0.76199 0.98805 0.90527 0.93939 0.90124 0.91499 0.91993 0.89909 0.90237 0.88099 0.84699 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.57 71.98 0.69 -2.67 16 2 C 0.08 2.33 3.38 30.55 0.10 2.43 16 3 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 4 C 0.12 4.03 5.94 86.21 0.51 4.54 16 5 N -0.62 -20.10 3.10 -705.26 -2.19 -22.29 16 6 C 0.58 22.00 8.39 260.54 2.19 24.19 16 7 N -0.89 -26.34 8.78 -58.56 -0.51 -26.86 16 8 N -0.62 -29.87 8.55 -349.34 -2.99 -32.86 16 9 C 0.15 7.26 5.19 86.38 0.45 7.71 16 10 C 0.03 1.71 2.17 -52.93 -0.11 1.60 16 11 C -0.50 -29.03 8.73 25.60 0.22 -28.81 16 12 H 0.03 1.76 7.82 -2.91 -0.02 1.74 16 13 C 0.05 2.73 5.30 84.65 0.45 3.18 16 14 N -0.87 -50.49 10.16 21.45 0.22 -50.27 16 15 Si 0.94 45.54 29.54 68.60 2.03 47.57 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 17 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 18 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 19 C -0.21 -9.64 9.96 30.62 0.30 -9.34 16 20 C -0.20 -8.87 9.92 30.62 0.30 -8.56 16 21 C 0.09 2.01 6.60 86.35 0.57 2.58 16 22 C 0.05 0.96 6.98 72.08 0.50 1.46 16 23 O -0.39 -10.23 10.39 -148.98 -1.55 -11.78 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 3.32 6.98 -2.39 -0.02 3.31 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.39 8.50 6.53 -92.71 -0.61 7.89 16 30 H 0.40 12.46 6.22 -92.71 -0.58 11.88 16 31 H -0.01 -0.25 5.42 -2.39 -0.01 -0.27 16 32 H 0.08 4.36 5.96 -2.39 -0.01 4.35 16 33 H 0.25 14.01 8.32 -92.70 -0.77 13.24 16 34 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.71 5.86 -2.39 -0.01 1.69 16 40 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.08 324.78 1.04 -67.04 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -0.15 Total: 31.13 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 6.18 Total: -1.67 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -5.47 Total: -132.28 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -1.55 Total: -11.78 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.08 1.04 -67.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262454787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.327 kcal (2) G-P(sol) polarization free energy of solvation -68.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds