Wall clock time and date at job start Mon Mar 30 2020 04:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47081 * 2 1 4 4 C 1.46903 * 110.99803 * 59.43999 * 3 2 1 5 5 C 1.52997 * 109.47233 * 66.04552 * 4 3 2 6 6 O 1.42895 * 109.47315 * 64.99833 * 5 4 3 7 7 C 1.42904 * 114.00329 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47395 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00084 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00462 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99388 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00433 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47216 * 89.99829 * 12 10 8 14 14 H 1.48499 * 109.46895 * 210.00026 * 12 10 8 15 15 H 1.48501 * 109.46836 * 329.99996 * 12 10 8 16 16 C 1.46899 * 111.00354 * 295.48713 * 3 2 1 17 17 C 1.50698 * 109.46914 * 288.29045 * 16 3 2 18 18 C 1.39871 * 126.04060 * 95.44955 * 17 16 3 19 19 N 1.30843 * 108.20012 * 179.97438 * 18 17 16 20 20 N 1.40077 * 108.20771 * 359.97438 * 19 18 17 21 21 C 1.46506 * 126.03654 * 179.97438 * 20 19 18 22 22 C 1.34950 * 107.92624 * 359.76054 * 20 19 18 23 23 H 1.08998 * 109.46769 * 60.04537 * 1 2 3 24 24 H 1.08995 * 109.47444 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47285 * 300.04678 * 1 2 3 26 26 H 1.09000 * 109.47030 * 240.00068 * 2 1 3 27 27 H 1.09003 * 109.46930 * 120.00182 * 2 1 3 28 28 H 1.08997 * 109.47152 * 306.04272 * 4 3 2 29 29 H 1.09007 * 109.46931 * 186.04514 * 4 3 2 30 30 H 1.09003 * 109.47429 * 184.99970 * 5 4 3 31 31 H 1.09002 * 109.47135 * 304.99711 * 5 4 3 32 32 H 1.08997 * 109.47111 * 300.00467 * 7 6 5 33 33 H 1.08999 * 109.46661 * 60.00390 * 7 6 5 34 34 H 0.97004 * 119.99725 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.47234 * 48.28420 * 16 3 2 36 36 H 1.08998 * 109.47275 * 168.28817 * 16 3 2 37 37 H 1.07999 * 125.89930 * 359.97438 * 18 17 16 38 38 H 1.09003 * 109.46581 * 89.97711 * 21 20 19 39 39 H 1.09003 * 109.46908 * 209.98005 * 21 20 19 40 40 H 1.08996 * 109.47028 * 329.98070 * 21 20 19 41 41 H 1.08001 * 126.12955 * 180.23707 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5377 2.1137 1.1810 5 6 2.1577 1.5084 2.4419 6 8 3.5719 1.7128 2.4227 7 6 4.2514 1.1826 3.5626 8 6 5.7286 1.4529 3.4374 9 1 6.1104 1.9774 2.5740 10 6 6.5929 1.0305 4.4252 11 7 6.1281 0.3912 5.4764 12 14 8.4240 1.3661 4.2704 13 1 8.7422 2.6743 4.8969 14 1 9.1840 0.2906 4.9566 15 1 8.8013 1.4001 2.8345 16 6 1.6388 2.0781 -1.2379 17 6 2.4531 1.5396 -2.3860 18 6 2.0589 0.5333 -3.2738 19 7 3.0290 0.3411 -4.1305 20 7 4.0724 1.2207 -3.8148 21 6 5.3490 1.3337 -4.5246 22 6 3.6921 1.9490 -2.7442 23 1 -0.3633 0.5131 -0.8904 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5145 0.8895 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4519 2.0370 1.2372 29 1 1.8242 3.1625 1.1027 30 1 1.7330 1.9899 3.3228 31 1 1.9455 0.4398 2.4742 32 1 3.8700 1.6577 4.4664 33 1 4.0826 0.1073 3.6184 34 1 6.7360 0.0944 6.1715 35 1 0.5795 1.9136 -1.4353 36 1 1.8265 3.1462 -1.1288 37 1 1.1166 0.0060 -3.2554 38 1 5.2566 2.0697 -5.3234 39 1 6.1255 1.6492 -3.8277 40 1 5.6145 0.3664 -4.9509 41 1 4.2737 2.7186 -2.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293232748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:51 Heat of formation + Delta-G solvation = 39.918392 kcal Electronic energy + Delta-G solvation = -20438.558933 eV Core-core repulsion = 17355.878995 eV Total energy + Delta-G solvation = -3082.679937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13024 -38.23082 -36.11306 -33.32581 -32.64759 -31.20431 -30.33342 -28.60923 -27.18234 -26.37231 -24.65298 -22.98253 -22.17325 -21.01228 -20.30874 -19.37433 -16.71483 -16.31089 -16.09242 -15.90776 -15.30435 -15.05550 -14.53851 -14.21471 -14.02394 -13.85608 -13.44287 -13.14496 -12.85892 -12.66410 -12.64529 -12.23489 -11.95898 -11.73471 -11.64012 -11.46743 -11.01865 -10.80269 -10.74899 -10.65403 -10.45762 -10.20824 -9.91174 -9.34070 -9.01685 -8.72292 -8.35354 -8.05419 -7.83419 -6.05088 -4.05599 1.97657 2.57115 2.83247 3.33022 3.37764 3.43287 4.34424 4.40875 4.51900 4.95295 4.96264 5.04888 5.09524 5.23328 5.30831 5.31196 5.31415 5.34237 5.45928 5.50503 5.66962 5.72408 5.76005 5.86028 5.97536 6.10847 6.16847 6.20248 6.25540 6.38425 6.48949 6.69094 7.06454 7.19340 7.42316 7.43923 7.52329 7.75063 7.86794 8.24497 8.71120 9.09656 9.58936 11.06726 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.004811 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.366528 B = 5818.925436 C = 7221.443952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.049 3.951 3 N -0.517 5.517 4 C 0.057 3.943 5 C 0.067 3.933 6 O -0.379 6.379 7 C 0.194 3.806 8 C -0.508 4.508 9 H 0.066 0.934 10 C 0.055 3.945 11 N -0.901 5.901 12 Si 0.906 3.094 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.272 1.272 16 C 0.129 3.871 17 C -0.226 4.226 18 C 0.052 3.948 19 N -0.306 5.306 20 N -0.380 5.380 21 C 0.103 3.897 22 C 0.080 3.920 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.001 0.999 33 H 0.002 0.998 34 H 0.263 0.737 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.176 0.824 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 2.631 -16.434 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.079 4.079 3 N -0.240 5.240 4 C -0.071 4.071 5 C -0.011 4.011 6 O -0.299 6.299 7 C 0.120 3.880 8 C -0.546 4.546 9 H 0.084 0.916 10 C -0.146 4.146 11 N -0.540 5.540 12 Si 0.734 3.266 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.197 1.197 16 C 0.001 3.999 17 C -0.237 4.237 18 C -0.134 4.134 19 N -0.128 5.128 20 N -0.162 5.162 21 C -0.038 4.038 22 C -0.067 4.067 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.193 0.807 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.199 1.982 -17.489 19.417 hybrid contribution -0.259 0.352 1.070 1.156 sum -8.458 2.334 -16.419 18.616 Atomic orbital electron populations 1.22450 0.99023 1.02047 1.01714 1.22151 0.91892 0.90811 1.03071 1.62118 1.59357 1.01724 1.00802 1.22199 0.96079 0.98701 0.90111 1.22246 0.85634 0.98217 0.95008 1.87937 1.15493 1.80300 1.46152 1.20154 0.92036 0.92837 0.83014 1.21059 0.90780 1.36620 1.06184 0.91615 1.24944 0.99431 0.95187 0.95026 1.69971 1.35305 1.39085 1.09656 0.86365 0.84153 0.77834 0.78292 1.20528 1.21161 1.19704 1.20316 0.95291 0.97481 0.86841 1.19886 0.97266 1.04301 1.02282 1.23704 0.98413 0.97644 0.93670 1.77280 0.96751 1.14247 1.24493 1.48413 1.14258 1.29071 1.24471 1.21826 0.81001 1.03770 0.97246 1.22384 0.96383 0.98012 0.89882 0.92635 0.92357 0.92399 0.90861 0.90432 0.93957 0.90384 0.94598 0.94616 0.98108 0.98014 0.92785 0.94032 0.90654 0.80705 0.91082 0.89294 0.89522 0.80806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 9.27 37.16 0.34 -1.77 16 2 C 0.05 0.68 5.69 -3.82 -0.02 0.66 16 3 N -0.52 -7.77 4.61 -236.07 -1.09 -8.86 16 4 C 0.06 0.85 5.08 -3.82 -0.02 0.83 16 5 C 0.07 1.27 5.99 37.16 0.22 1.49 16 6 O -0.38 -9.36 10.27 -35.23 -0.36 -9.72 16 7 C 0.19 5.45 5.69 36.00 0.20 5.66 16 8 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 9 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 10 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 12 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.13 1.60 5.34 -4.98 -0.03 1.57 16 17 C -0.23 -2.94 4.99 -105.05 -0.52 -3.46 16 18 C 0.05 0.67 11.01 -17.36 -0.19 0.48 16 19 N -0.31 -4.35 12.58 30.63 0.39 -3.96 16 20 N -0.38 -4.82 4.01 -68.16 -0.27 -5.09 16 21 C 0.10 0.87 11.47 59.85 0.69 1.56 16 22 C 0.08 1.03 11.40 -17.22 -0.20 0.83 16 23 H 0.05 0.55 6.29 -51.93 -0.33 0.22 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.64 6.26 -51.93 -0.33 0.31 16 26 H 0.07 1.03 6.60 -51.93 -0.34 0.69 16 27 H 0.08 1.24 6.40 -51.93 -0.33 0.90 16 28 H 0.04 0.53 5.98 -51.93 -0.31 0.22 16 29 H 0.08 1.16 7.86 -51.92 -0.41 0.75 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.67 6.35 -51.93 -0.33 0.34 16 32 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.04 0.45 5.96 -51.93 -0.31 0.14 16 36 H 0.08 0.89 7.81 -51.93 -0.41 0.48 16 37 H 0.18 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -34.42 335.20 -6.96 -41.38 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.44 Total: -3.05 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 0.06 Total: -6.21 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.24 Total: -44.55 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.36 Total: -9.72 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.42 -6.96 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293232748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.297 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds