Wall clock time and date at job start Mon Mar 30 2020 04:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47081 * 2 1 4 4 C 1.46903 * 110.99803 * 59.43999 * 3 2 1 5 5 C 1.52997 * 109.47233 * 66.04552 * 4 3 2 6 6 O 1.42895 * 109.47315 * 64.99833 * 5 4 3 7 7 C 1.42904 * 114.00329 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47395 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00084 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00462 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99388 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00433 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47216 * 89.99829 * 12 10 8 14 14 H 1.48499 * 109.46895 * 210.00026 * 12 10 8 15 15 H 1.48501 * 109.46836 * 329.99996 * 12 10 8 16 16 C 1.46899 * 111.00354 * 295.48713 * 3 2 1 17 17 C 1.50698 * 109.46914 * 288.29045 * 16 3 2 18 18 C 1.39871 * 126.04060 * 95.44955 * 17 16 3 19 19 N 1.30843 * 108.20012 * 179.97438 * 18 17 16 20 20 N 1.40077 * 108.20771 * 359.97438 * 19 18 17 21 21 C 1.46506 * 126.03654 * 179.97438 * 20 19 18 22 22 C 1.34950 * 107.92624 * 359.76054 * 20 19 18 23 23 H 1.08998 * 109.46769 * 60.04537 * 1 2 3 24 24 H 1.08995 * 109.47444 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47285 * 300.04678 * 1 2 3 26 26 H 1.09000 * 109.47030 * 240.00068 * 2 1 3 27 27 H 1.09003 * 109.46930 * 120.00182 * 2 1 3 28 28 H 1.08997 * 109.47152 * 306.04272 * 4 3 2 29 29 H 1.09007 * 109.46931 * 186.04514 * 4 3 2 30 30 H 1.09003 * 109.47429 * 184.99970 * 5 4 3 31 31 H 1.09002 * 109.47135 * 304.99711 * 5 4 3 32 32 H 1.08997 * 109.47111 * 300.00467 * 7 6 5 33 33 H 1.08999 * 109.46661 * 60.00390 * 7 6 5 34 34 H 0.97004 * 119.99725 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.47234 * 48.28420 * 16 3 2 36 36 H 1.08998 * 109.47275 * 168.28817 * 16 3 2 37 37 H 1.07999 * 125.89930 * 359.97438 * 18 17 16 38 38 H 1.09003 * 109.46581 * 89.97711 * 21 20 19 39 39 H 1.09003 * 109.46908 * 209.98005 * 21 20 19 40 40 H 1.08996 * 109.47028 * 329.98070 * 21 20 19 41 41 H 1.08001 * 126.12955 * 180.23707 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5377 2.1137 1.1810 5 6 2.1577 1.5084 2.4419 6 8 3.5719 1.7128 2.4227 7 6 4.2514 1.1826 3.5626 8 6 5.7286 1.4529 3.4374 9 1 6.1104 1.9774 2.5740 10 6 6.5929 1.0305 4.4252 11 7 6.1281 0.3912 5.4764 12 14 8.4240 1.3661 4.2704 13 1 8.7422 2.6743 4.8969 14 1 9.1840 0.2906 4.9566 15 1 8.8013 1.4001 2.8345 16 6 1.6388 2.0781 -1.2379 17 6 2.4531 1.5396 -2.3860 18 6 2.0589 0.5333 -3.2738 19 7 3.0290 0.3411 -4.1305 20 7 4.0724 1.2207 -3.8148 21 6 5.3490 1.3337 -4.5246 22 6 3.6921 1.9490 -2.7442 23 1 -0.3633 0.5131 -0.8904 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5145 0.8895 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4519 2.0370 1.2372 29 1 1.8242 3.1625 1.1027 30 1 1.7330 1.9899 3.3228 31 1 1.9455 0.4398 2.4742 32 1 3.8700 1.6577 4.4664 33 1 4.0826 0.1073 3.6184 34 1 6.7360 0.0944 6.1715 35 1 0.5795 1.9136 -1.4353 36 1 1.8265 3.1462 -1.1288 37 1 1.1166 0.0060 -3.2554 38 1 5.2566 2.0697 -5.3234 39 1 6.1255 1.6492 -3.8277 40 1 5.6145 0.3664 -4.9509 41 1 4.2737 2.7186 -2.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293232748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:50 Heat of formation + Delta-G solvation = 15.744689 kcal Electronic energy + Delta-G solvation = -20439.607183 eV Core-core repulsion = 17355.878995 eV Total energy + Delta-G solvation = -3083.728188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.07213 -39.48997 -37.86241 -34.90577 -34.16649 -32.21065 -31.60539 -29.85832 -28.86785 -27.61378 -25.61091 -24.55471 -24.07876 -21.93927 -21.40532 -20.45407 -18.57267 -17.62429 -17.51815 -17.28055 -16.65017 -16.27006 -16.01031 -15.61346 -15.46884 -15.17015 -14.52877 -14.48190 -13.96499 -13.64867 -13.62827 -13.44105 -13.31768 -13.09175 -12.98078 -12.76287 -12.64702 -12.50208 -12.33373 -12.11118 -11.79616 -11.62470 -11.33553 -11.17435 -10.81990 -10.29004 -10.12679 -9.31707 -8.90340 -8.29785 -6.41486 1.02118 1.39870 1.43227 1.55045 1.74502 1.86387 2.36357 3.03863 3.22208 3.36878 3.70061 4.06760 4.19194 4.20848 4.28129 4.36029 4.39569 4.45061 4.49326 4.54770 4.64071 4.65751 4.69241 4.76214 4.79128 4.86949 4.95737 5.03020 5.14988 5.18234 5.22859 5.27704 5.46497 5.57878 5.77031 6.00559 6.18124 6.31954 6.37580 6.61072 6.79760 6.90696 7.30894 8.82766 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.015378 B = 0.004811 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.366528 B = 5818.925436 C = 7221.443952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 N -0.544 5.544 4 C 0.067 3.933 5 C 0.057 3.943 6 O -0.393 6.393 7 C 0.210 3.790 8 C -0.542 4.542 9 H 0.061 0.939 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.982 3.018 13 H -0.266 1.266 14 H -0.275 1.275 15 H -0.265 1.265 16 C 0.135 3.865 17 C -0.238 4.238 18 C 0.050 3.950 19 N -0.337 5.337 20 N -0.385 5.385 21 C 0.094 3.906 22 C 0.068 3.932 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.033 0.967 32 H -0.017 1.017 33 H -0.022 1.022 34 H 0.270 0.730 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.196 0.804 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.340 3.397 -17.368 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.076 4.076 3 N -0.268 5.268 4 C -0.060 4.060 5 C -0.020 4.020 6 O -0.312 6.312 7 C 0.134 3.866 8 C -0.580 4.580 9 H 0.079 0.921 10 C -0.193 4.193 11 N -0.572 5.572 12 Si 0.805 3.195 13 H -0.191 1.191 14 H -0.200 1.200 15 H -0.189 1.189 16 C 0.008 3.992 17 C -0.250 4.250 18 C -0.136 4.136 19 N -0.159 5.159 20 N -0.167 5.167 21 C -0.046 4.046 22 C -0.080 4.080 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.001 0.999 33 H -0.005 1.005 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.213 0.787 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -8.123 2.751 -18.443 20.340 hybrid contribution -0.338 0.089 1.344 1.389 sum -8.462 2.840 -17.099 19.289 Atomic orbital electron populations 1.22342 0.96336 1.03016 1.02478 1.22033 0.94071 0.90158 1.01329 1.62031 1.60686 1.02314 1.01770 1.22100 0.97411 0.98238 0.88270 1.22612 0.82751 0.98784 0.97886 1.87893 1.18739 1.80024 1.44580 1.19761 0.92114 0.91164 0.83535 1.21373 0.92034 1.37854 1.06745 0.92116 1.25966 1.04939 0.94219 0.94175 1.70083 1.37502 1.39310 1.10340 0.85195 0.77171 0.78367 0.78750 1.19087 1.20041 1.18923 1.20314 0.96259 0.97366 0.85287 1.20074 0.97603 1.04680 1.02662 1.24066 0.98933 0.97470 0.93139 1.77220 0.97679 1.15410 1.25611 1.48748 1.14923 1.28519 1.24547 1.22120 0.79857 1.04614 0.97978 1.22717 0.96774 0.98354 0.90114 0.90964 0.91397 0.92327 0.91347 0.93426 0.90684 0.90118 0.93814 0.94844 0.99938 1.00459 0.92147 0.92017 0.90082 0.78682 0.89157 0.87940 0.89287 0.79715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.59 9.27 71.98 0.67 -2.92 16 2 C 0.05 1.42 5.69 86.30 0.49 1.91 16 3 N -0.54 -15.77 4.61 -900.79 -4.15 -19.92 16 4 C 0.07 1.92 5.08 86.30 0.44 2.36 16 5 C 0.06 2.17 5.99 71.98 0.43 2.60 16 6 O -0.39 -19.82 10.27 -148.98 -1.53 -21.35 16 7 C 0.21 12.19 5.69 71.23 0.41 12.59 16 8 C -0.54 -33.12 9.43 25.60 0.24 -32.88 16 9 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 10 C 0.01 0.30 5.46 84.65 0.46 0.76 16 11 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 12 Si 0.98 45.03 29.54 68.60 2.03 47.06 16 13 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 14 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 15 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 16 C 0.14 3.09 5.34 85.56 0.46 3.54 16 17 C -0.24 -5.92 4.99 -20.14 -0.10 -6.02 16 18 C 0.05 1.21 11.01 85.24 0.94 2.15 16 19 N -0.34 -9.33 12.58 -57.02 -0.72 -10.05 16 20 N -0.38 -9.44 4.01 -369.54 -1.48 -10.93 16 21 C 0.09 1.49 11.47 127.77 1.47 2.95 16 22 C 0.07 1.69 11.40 83.54 0.95 2.64 16 23 H 0.07 1.19 6.29 -2.39 -0.02 1.17 16 24 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.14 6.26 -2.39 -0.01 1.13 16 26 H 0.07 1.90 6.60 -2.39 -0.02 1.89 16 27 H 0.05 1.55 6.40 -2.39 -0.02 1.54 16 28 H 0.08 1.67 5.98 -2.39 -0.01 1.66 16 29 H 0.08 2.27 7.86 -2.38 -0.02 2.25 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.28 6.35 -2.39 -0.02 1.27 16 32 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 33 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.06 1.15 5.96 -2.39 -0.01 1.14 16 36 H 0.08 1.74 7.81 -2.39 -0.02 1.72 16 37 H 0.20 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.19 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -74.51 335.20 2.28 -72.23 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.00 Total: 10.18 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 6.85 Total: -10.31 kcal Atomic # 7 Polarization: -91.74 SS G_CDS: -6.07 Total: -97.80 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.53 Total: -21.35 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.51 2.28 -72.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293232748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.972 kcal (2) G-P(sol) polarization free energy of solvation -74.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds