Wall clock time and date at job start Mon Mar 30 2020 04:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46899 * 111.00179 * 2 1 4 4 C 1.52997 * 109.47004 * 66.04982 * 3 2 1 5 5 C 1.52993 * 109.47341 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47517 * 179.97438 * 5 4 3 7 7 C 1.36890 * 126.40096 * 270.03397 * 6 5 4 8 8 C 1.34667 * 106.81864 * 179.97438 * 7 6 5 9 9 N 1.34130 * 108.01939 * 359.97438 * 8 7 6 10 10 C 1.30496 * 109.25586 * 0.02562 * 9 8 7 11 11 C 1.46903 * 111.00071 * 236.04658 * 2 1 3 12 12 C 1.52994 * 109.47557 * 199.82936 * 11 2 1 13 13 O 1.42894 * 109.47289 * 64.43601 * 12 11 2 14 14 C 1.42903 * 114.00494 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47441 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99839 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99638 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00395 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99444 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47032 * 90.00201 * 19 17 15 21 21 H 1.48504 * 109.46826 * 209.99750 * 19 17 15 22 22 H 1.48495 * 109.47608 * 329.99905 * 19 17 15 23 23 H 1.08998 * 109.47414 * 54.75639 * 1 2 3 24 24 H 1.09004 * 109.47497 * 174.75741 * 1 2 3 25 25 H 1.09006 * 109.47262 * 294.75474 * 1 2 3 26 26 H 1.08989 * 109.46987 * 306.04619 * 3 2 1 27 27 H 1.09000 * 109.46962 * 186.04177 * 3 2 1 28 28 H 1.09002 * 109.47359 * 59.99782 * 4 3 2 29 29 H 1.09008 * 109.47030 * 299.99859 * 4 3 2 30 30 H 1.09002 * 109.46912 * 59.99704 * 5 4 3 31 31 H 1.08996 * 109.47512 * 299.99884 * 5 4 3 32 32 H 1.07998 * 126.58729 * 359.97438 * 7 6 5 33 33 H 1.08004 * 125.98659 * 180.26599 * 8 7 6 34 34 H 1.08004 * 125.64694 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47131 * 319.82902 * 11 2 1 36 36 H 1.09001 * 109.46771 * 79.82526 * 11 2 1 37 37 H 1.08997 * 109.47318 * 184.43996 * 12 11 2 38 38 H 1.09001 * 109.47260 * 304.43926 * 12 11 2 39 39 H 1.09004 * 109.46710 * 299.99961 * 14 13 12 40 40 H 1.08999 * 109.47104 * 59.99336 * 14 13 12 41 41 H 0.96994 * 119.99551 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1804 3.4854 1.3186 6 7 1.8314 4.1425 2.5806 7 6 0.6980 4.8675 2.8328 8 6 0.7806 5.2883 4.1093 9 7 1.9327 4.8322 4.6229 10 6 2.5674 4.1453 3.7128 11 6 1.9954 -0.7660 -1.1376 12 6 3.4450 -1.1662 -0.8560 13 8 3.4852 -2.0539 0.2630 14 6 4.8005 -2.4901 0.6121 15 6 4.7243 -3.4171 1.7978 16 1 3.7672 -3.6495 2.2409 17 6 5.8767 -3.9675 2.3177 18 7 7.0422 -3.6840 1.7784 19 14 5.7822 -5.1159 3.7879 20 1 5.6240 -6.5145 3.3143 21 1 7.0293 -5.0018 4.5861 22 1 4.6185 -4.7446 4.6323 23 1 -0.3634 0.5930 -0.8393 24 1 -0.3634 -1.0234 -0.0939 25 1 -0.3634 0.4303 0.9333 26 1 1.5611 1.9272 -0.8308 27 1 3.0797 1.3443 -0.1082 28 1 2.0659 1.5014 2.1492 29 1 0.5472 2.0844 1.4266 30 1 1.7464 4.0416 0.4877 31 1 3.2646 3.4581 1.2106 32 1 -0.1076 5.0642 2.1409 33 1 0.0455 5.8843 4.6299 34 1 3.5228 3.6589 3.8438 35 1 1.3925 -1.6625 -1.2822 36 1 1.9561 -0.1527 -2.0379 37 1 3.8606 -1.6656 -1.7311 38 1 4.0314 -0.2747 -0.6337 39 1 5.2446 -3.0170 -0.2325 40 1 5.4148 -1.6259 0.8648 41 1 7.8528 -4.0710 2.1444 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293738001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:24 Heat of formation + Delta-G solvation = 16.911652 kcal Electronic energy + Delta-G solvation = -19900.010331 eV Core-core repulsion = 16816.332747 eV Total energy + Delta-G solvation = -3083.677584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.09250 -38.26195 -36.33806 -34.93720 -32.70193 -31.36652 -29.59403 -29.36049 -26.96896 -26.54989 -24.24917 -22.30054 -22.08623 -21.41323 -20.89011 -20.51922 -17.54229 -16.39400 -16.10816 -15.71187 -15.54399 -15.09095 -14.92037 -14.45954 -14.21992 -14.02143 -13.88917 -13.69978 -13.31196 -13.02074 -12.52204 -12.31797 -12.21415 -11.78159 -11.76520 -11.60277 -11.10076 -10.91945 -10.81191 -10.70666 -10.37859 -10.05322 -9.98237 -9.71090 -9.06472 -8.77911 -8.61441 -8.20001 -8.10969 -6.08401 -4.09330 1.96256 2.65641 3.11499 3.32502 3.37569 3.43624 3.89384 4.37625 4.38962 4.66336 4.69314 4.78390 4.86491 4.90404 5.01516 5.13273 5.27985 5.28324 5.31998 5.36551 5.43075 5.55487 5.62466 5.65293 5.81401 5.89247 5.96034 6.05940 6.09402 6.18990 6.23771 6.63683 7.06436 7.10625 7.13642 7.16956 7.45620 7.83560 8.00305 8.19524 8.64344 9.05441 9.55678 11.03269 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.003952 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.518832 B = 7084.094454 C = 8362.807482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.527 5.527 3 C 0.059 3.941 4 C -0.132 4.132 5 C 0.105 3.895 6 N -0.456 5.456 7 C -0.060 4.060 8 C -0.034 4.034 9 N -0.500 5.500 10 C 0.187 3.813 11 C 0.061 3.939 12 C 0.068 3.932 13 O -0.380 6.380 14 C 0.195 3.805 15 C -0.511 4.511 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.901 5.901 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.271 1.271 23 H 0.019 0.981 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.205 0.795 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 15.714 -5.634 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.251 5.251 3 C -0.070 4.070 4 C -0.170 4.170 5 C -0.018 4.018 6 N -0.138 5.138 7 C -0.193 4.193 8 C -0.182 4.182 9 N -0.218 5.218 10 C -0.096 4.096 11 C -0.067 4.067 12 C -0.010 4.010 13 O -0.299 6.299 14 C 0.120 3.880 15 C -0.549 4.549 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 H 0.037 0.963 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.188 0.812 33 H 0.184 0.816 34 H 0.222 0.778 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.729 15.450 -4.417 19.894 hybrid contribution -0.198 -0.310 -1.062 1.124 sum -11.926 15.140 -5.479 20.037 Atomic orbital electron populations 1.22423 0.87701 1.01892 1.00213 1.61778 1.07169 1.12271 1.43869 1.22037 1.01044 0.88632 0.95258 1.21955 1.01843 0.93287 0.99940 1.21916 1.02454 0.93872 0.83564 1.45624 1.16899 1.38932 1.12356 1.22695 0.93186 1.03434 1.00022 1.22290 0.97414 1.05619 0.92847 1.70306 1.07104 1.13888 1.30469 1.25106 0.99993 1.02674 0.81785 1.22178 0.96846 0.97455 0.90229 1.22223 0.94370 0.93595 0.90817 1.87943 1.31850 1.63253 1.46891 1.20167 0.78846 0.93781 0.95161 1.21064 0.93760 1.26758 1.13312 0.91554 1.24941 0.94955 0.96938 0.97680 1.69963 0.97850 1.44652 1.41539 0.86358 0.77582 0.80694 0.82004 1.20519 1.21100 1.19589 0.96291 0.91231 0.91536 0.95152 0.90142 0.89574 0.91259 0.89288 0.88470 0.81241 0.81616 0.77812 0.90106 0.94153 0.94370 0.94795 0.98080 0.97970 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.23 60.06 0.55 0.85 16 2 N -0.53 -7.32 4.63 -242.93 -1.13 -8.44 16 3 C 0.06 0.65 4.78 -3.83 -0.02 0.63 16 4 C -0.13 -1.33 5.46 -26.74 -0.15 -1.47 16 5 C 0.10 0.84 6.15 -4.05 -0.02 0.81 16 6 N -0.46 -4.65 2.75 -118.58 -0.33 -4.98 16 7 C -0.06 -0.59 11.58 -16.56 -0.19 -0.78 16 8 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 9 N -0.50 -6.96 11.25 -14.66 -0.16 -7.12 16 10 C 0.19 2.22 12.56 -90.38 -1.14 1.09 16 11 C 0.06 0.86 5.39 -3.83 -0.02 0.84 16 12 C 0.07 1.22 6.13 37.15 0.23 1.45 16 13 O -0.38 -9.15 10.27 -35.23 -0.36 -9.51 16 14 C 0.19 5.36 5.69 36.01 0.20 5.56 16 15 C -0.51 -15.18 9.43 -34.44 -0.32 -15.50 16 16 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.02 0.18 8.07 -51.93 -0.42 -0.24 16 24 H 0.07 0.80 7.85 -51.93 -0.41 0.40 16 25 H 0.07 0.72 6.73 -51.93 -0.35 0.37 16 26 H 0.03 0.28 8.07 -51.94 -0.42 -0.14 16 27 H 0.08 0.94 6.58 -51.93 -0.34 0.60 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.07 0.69 6.67 -51.92 -0.35 0.35 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.21 1.95 8.06 -52.48 -0.42 1.53 16 35 H 0.08 1.16 7.74 -51.93 -0.40 0.76 16 36 H 0.04 0.46 8.00 -51.93 -0.42 0.05 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.03 0.59 6.68 -51.93 -0.35 0.24 16 39 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -34.56 342.32 -9.09 -43.64 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.80 Total: -3.87 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.18 Total: -5.60 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.88 Total: -46.86 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.36 Total: -9.51 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.56 -9.09 -43.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293738001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.553 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds